RNA–Protein interactions for RNA: ENST00000622892.4

PSME3-217, Transcript of proteasome activator subunit 3, humanhuman

TSL 1 (best) BASIC

Gene PSME3, Length 3,183 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSME3-217ENST00000622892 NISCHQ9Y2I1 1504 aa26.72■■□□□ 1.87
PSME3-217ENST00000622892 DCAF8L2P0C7V8 631 aa23■■□□□ 1.27
PSME3-217ENST00000622892 CCDC180Q9P1Z9 1646 aa22.92■■□□□ 1.26
PSME3-217ENST00000622892 SHROOM4Q9ULL8 1493 aa22.72■■□□□ 1.23
PSME3-217ENST00000622892 ZCCHC6Q5VYS8 1495 aaKnown RBP22.4■■□□□ 1.18
PSME3-217ENST00000622892 ABCC9O60706 1549 aa22.37■■□□□ 1.17
PSME3-217ENST00000622892 SUPT5HO00267 1087 aaKnown RBP22.27■■□□□ 1.16
PSME3-217ENST00000622892 HRCP23327 699 aa21.71■■□□□ 1.07
PSME3-217ENST00000622892 SCRIBQ14160 1630 aa21.71■■□□□ 1.07
PSME3-217ENST00000622892 DCAF1Q9Y4B6 1507 aa21.69■■□□□ 1.06
PSME3-217ENST00000622892 CHIC1Q5VXU3 224 aa21.64■■□□□ 1.05
PSME3-217ENST00000622892 MYO15BQ96JP2 1530 aa21.63■■□□□ 1.05
PSME3-217ENST00000622892 PCGF6Q9BYE7 350 aa21.61■■□□□ 1.05
PSME3-217ENST00000622892 PPARGC1BQ86YN6 1023 aaKnown RBP21.46■■□□□ 1.03
PSME3-217ENST00000622892 NACADO15069 1562 aa21.45■■□□□ 1.02
PSME3-217ENST00000622892 RB1CC1Q8TDY2 1594 aa21.36■■□□□ 1.01
PSME3-217ENST00000622892 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.01
PSME3-217ENST00000622892 LOC105371045A0A1W2PR82 267 aa21.24■□□□□ 0.99
PSME3-217ENST00000622892 CECR2Q9BXF3 1484 aa21.06■□□□□ 0.96
PSME3-217ENST00000622892 UNC13AQ9UPW8 1703 aa21■□□□□ 0.95
PSME3-217ENST00000622892 RSF1Q96T23 1441 aaPredicted RBP20.9■□□□□ 0.94
PSME3-217ENST00000622892 TRIM26Q12899 539 aaPredicted RBP20.87■□□□□ 0.93
PSME3-217ENST00000622892 MROH2BQ7Z745 1585 aa20.83■□□□□ 0.93
PSME3-217ENST00000622892 BICRAQ9NZM4 1560 aa20.77■□□□□ 0.92
PSME3-217ENST00000622892 WIZO95785 1651 aa20.7■□□□□ 0.9
PSME3-217ENST00000622892 EHMT2Q96KQ7 1210 aa20.65■□□□□ 0.9
PSME3-217ENST00000622892 FAM9AQ8IZU1 332 aaPredicted RBP20.64■□□□□ 0.89
PSME3-217ENST00000622892 BAZ1AQ9NRL2 1556 aaPredicted RBP20.58■□□□□ 0.88
PSME3-217ENST00000622892 TRIM41Q8WV44 630 aa20.54■□□□□ 0.88
PSME3-217ENST00000622892 SMARCA4P51532 1647 aa20.52■□□□□ 0.88
PSME3-217ENST00000622892 ZEB1P37275 1124 aaPredicted RBP20.48■□□□□ 0.87
PSME3-217ENST00000622892 SCAF1Q9H7N4 1312 aaKnown RBP20.39■□□□□ 0.85
PSME3-217ENST00000622892 CCDC88BA6NC98 1476 aa20.23■□□□□ 0.83
PSME3-217ENST00000622892 TOP2AP11388 1531 aaKnown RBP20.23■□□□□ 0.83
PSME3-217ENST00000622892 ATAD2BQ9ULI0 1458 aa20.22■□□□□ 0.83
PSME3-217ENST00000622892 PELP1Q8IZL8 1130 aaKnown RBP20.22■□□□□ 0.83
PSME3-217ENST00000622892 EIF4G1Q04637 1599 aaKnown RBP20.21■□□□□ 0.83
PSME3-217ENST00000622892 BAZ1BQ9UIG0 1483 aaKnown RBP20.2■□□□□ 0.82
PSME3-217ENST00000622892 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.17■□□□□ 0.82
PSME3-217ENST00000622892 SMARCA2P51531 1590 aa20.13■□□□□ 0.81
PSME3-217ENST00000622892 CCER1Q8TC90 406 aaPredicted RBP20.07■□□□□ 0.8
PSME3-217ENST00000622892 TTBK1Q5TCY1 1321 aaPredicted RBP20.05■□□□□ 0.8
PSME3-217ENST00000622892 ABCC8Q09428 1581 aa20.05■□□□□ 0.8
PSME3-217ENST00000622892 NEUROD1Q13562 356 aa20■□□□□ 0.79
PSME3-217ENST00000622892 PEG3Q9GZU2 1588 aa19.98■□□□□ 0.79
PSME3-217ENST00000622892 ACIN1Q9UKV3 1341 aaKnown RBP19.96■□□□□ 0.79
PSME3-217ENST00000622892 CC2D2AQ9P2K1 1620 aa19.96■□□□□ 0.79
PSME3-217ENST00000622892 DNAJC5BQ9UF47 199 aa19.96■□□□□ 0.79
PSME3-217ENST00000622892 DIEXFQ68CQ4 756 aaKnown RBP19.88■□□□□ 0.77
PSME3-217ENST00000622892 NCAPD3P42695 1498 aa19.88■□□□□ 0.77
PSME3-217ENST00000622892 GTF3C3Q9Y5Q9 886 aa19.86■□□□□ 0.77
PSME3-217ENST00000622892 HMGXB3Q12766 1538 aa19.77■□□□□ 0.76
PSME3-217ENST00000622892 CENPBP07199 599 aaPredicted RBP19.75■□□□□ 0.75
PSME3-217ENST00000622892 WRNQ14191 1432 aaPredicted RBP eCLIP19.72■□□□□ 0.75
PSME3-217ENST00000622892 SOGA1O94964 1423 aa19.69■□□□□ 0.74
PSME3-217ENST00000622892 RANGAP1P46060 587 aaPredicted RBP19.65■□□□□ 0.74
PSME3-217ENST00000622892 YTHDC1Q96MU7 727 aaKnown RBP19.65■□□□□ 0.74
PSME3-217ENST00000622892 RUSC2Q8N2Y8 1516 aa19.65■□□□□ 0.74
PSME3-217ENST00000622892 NESP48681 1621 aa19.64■□□□□ 0.73
PSME3-217ENST00000622892 SYNJ1O43426 1573 aa19.62■□□□□ 0.73
PSME3-217ENST00000622892 UBTFP17480 764 aaKnown RBP19.58■□□□□ 0.73
PSME3-217ENST00000622892 CADPSQ9ULU8 1353 aa19.56■□□□□ 0.72
PSME3-217ENST00000622892 CEP162Q5TB80 1403 aa19.55■□□□□ 0.72
PSME3-217ENST00000622892 ZNF316A6NFI3 1004 aaPredicted RBP19.54■□□□□ 0.72
PSME3-217ENST00000622892 CFTRP13569 1480 aa19.54■□□□□ 0.72
PSME3-217ENST00000622892 HNRNPUL2Q1KMD3 747 aaKnown RBP19.48■□□□□ 0.71
PSME3-217ENST00000622892 CSRNP3Q8WYN3 585 aa19.48■□□□□ 0.71
PSME3-217ENST00000622892 MIER1Q8N108 512 aa19.44■□□□□ 0.7
PSME3-217ENST00000622892 CUX1P39880 1505 aa19.42■□□□□ 0.7
PSME3-217ENST00000622892 TNIKQ9UKE5 1360 aa19.41■□□□□ 0.7
PSME3-217ENST00000622892 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
PSME3-217ENST00000622892 TOP2BQ02880 1626 aa19.34■□□□□ 0.69
PSME3-217ENST00000622892 FGD5Q6ZNL6 1462 aa19.26■□□□□ 0.67
PSME3-217ENST00000622892 RAD54L2Q9Y4B4 1467 aa19.25■□□□□ 0.67
PSME3-217ENST00000622892 CEP164Q9UPV0 1460 aa19.24■□□□□ 0.67
PSME3-217ENST00000622892 CUX2O14529 1486 aa19.24■□□□□ 0.67
PSME3-217ENST00000622892 MYT1Q01538 1121 aa19.24■□□□□ 0.67
PSME3-217ENST00000622892 BIVM-ERCC5R4GMW8 1640 aa19.22■□□□□ 0.67
PSME3-217ENST00000622892 RAPGEF2Q9Y4G8 1499 aa19.21■□□□□ 0.67
PSME3-217ENST00000622892 PRDM2Q13029 1718 aa19.2■□□□□ 0.66
PSME3-217ENST00000622892 GOLGA3Q08378 1498 aa19.2■□□□□ 0.66
PSME3-217ENST00000622892 EEA1Q15075 1411 aa19.18■□□□□ 0.66
PSME3-217ENST00000622892 PDS5BQ9NTI5 1447 aa19.18■□□□□ 0.66
PSME3-217ENST00000622892 APLP2Q06481 763 aa19.17■□□□□ 0.66
PSME3-217ENST00000622892 LAMC3Q9Y6N6 1575 aa19.17■□□□□ 0.66
PSME3-217ENST00000622892 KIF21AQ7Z4S6 1674 aa19.16■□□□□ 0.66
PSME3-217ENST00000622892 KIF27Q86VH2 1401 aa19.16■□□□□ 0.66
PSME3-217ENST00000622892 TOPBP1Q92547 1522 aa19.15■□□□□ 0.66
PSME3-217ENST00000622892 URB2Q14146 1524 aaKnown RBP19.14■□□□□ 0.66
PSME3-217ENST00000622892 TDRD9Q8NDG6 1382 aaKnown RBP19.14■□□□□ 0.65
PSME3-217ENST00000622892 POLA1P09884 1462 aaPredicted RBP19.11■□□□□ 0.65
PSME3-217ENST00000622892 ERCC6Q03468 1493 aa19.11■□□□□ 0.65
PSME3-217ENST00000622892 CLIP1P30622 1438 aa19.11■□□□□ 0.65
PSME3-217ENST00000622892 DNMBPQ6XZF7 1577 aa19.07■□□□□ 0.64
PSME3-217ENST00000622892 P3H3Q8IVL6 736 aa19.05■□□□□ 0.64
PSME3-217ENST00000622892 IGF1RP08069 1367 aa19.02■□□□□ 0.64
PSME3-217ENST00000622892 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
PSME3-217ENST00000622892 CARMIL1Q5VZK9 1371 aa18.98■□□□□ 0.63
PSME3-217ENST00000622892 KIF21BO75037 1637 aa18.97■□□□□ 0.63
PSME3-217ENST00000622892 ATP1B4Q9UN42 357 aaPredicted RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms