RNA–Protein interactions for RNA: ENST00000621748.1

SCAMP4-213, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SCAMP4, Length 1,172 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-213ENST00000621748 NISCHQ9Y2I1 1504 aa44.29■■■■■ 4.68
SCAMP4-213ENST00000621748 CCDC180Q9P1Z9 1646 aa39.5■■■■□ 3.91
SCAMP4-213ENST00000621748 ABCC9O60706 1549 aa39.1■■■■□ 3.85
SCAMP4-213ENST00000621748 RB1CC1Q8TDY2 1594 aa37.38■■■■□ 3.58
SCAMP4-213ENST00000621748 NACADO15069 1562 aa37.25■■■■□ 3.55
SCAMP4-213ENST00000621748 DCAF8L2P0C7V8 631 aa37.23■■■■□ 3.55
SCAMP4-213ENST00000621748 MYO15BQ96JP2 1530 aa36.89■■■■□ 3.5
SCAMP4-213ENST00000621748 ZCCHC6Q5VYS8 1495 aaKnown RBP36.8■■■■□ 3.48
SCAMP4-213ENST00000621748 UNC13AQ9UPW8 1703 aa36.6■■■■□ 3.45
SCAMP4-213ENST00000621748 DCAF1Q9Y4B6 1507 aa36.59■■■■□ 3.45
SCAMP4-213ENST00000621748 PABPN1Q86U42 306 aaKnown RBP eCLIP36.52■■■■□ 3.44
SCAMP4-213ENST00000621748 DNAJC5BQ9UF47 199 aa36.34■■■■□ 3.41
SCAMP4-213ENST00000621748 BICRAQ9NZM4 1560 aa36.32■■■■□ 3.41
SCAMP4-213ENST00000621748 SCRIBQ14160 1630 aa36.06■■■■□ 3.36
SCAMP4-213ENST00000621748 SHROOM4Q9ULL8 1493 aa35.8■■■■□ 3.32
SCAMP4-213ENST00000621748 EIF4G1Q04637 1599 aaKnown RBP35.38■■■■□ 3.25
SCAMP4-213ENST00000621748 CC2D2AQ9P2K1 1620 aa35.34■■■■□ 3.25
SCAMP4-213ENST00000621748 CECR2Q9BXF3 1484 aa35.16■■■■□ 3.22
SCAMP4-213ENST00000621748 SMARCA4P51532 1647 aa34.44■■■■□ 3.1
SCAMP4-213ENST00000621748 NCAPD3P42695 1498 aa34.4■■■■□ 3.1
SCAMP4-213ENST00000621748 ATAD2BQ9ULI0 1458 aa34.37■■■■□ 3.09
SCAMP4-213ENST00000621748 BAZ1AQ9NRL2 1556 aaPredicted RBP34.32■■■■□ 3.09
SCAMP4-213ENST00000621748 SMARCA2P51531 1590 aa34.27■■■■□ 3.08
SCAMP4-213ENST00000621748 MROH2BQ7Z745 1585 aa34.15■■■■□ 3.06
SCAMP4-213ENST00000621748 HMGXB3Q12766 1538 aa34.15■■■■□ 3.06
SCAMP4-213ENST00000621748 PEG3Q9GZU2 1588 aa34.1■■■■□ 3.05
SCAMP4-213ENST00000621748 BAZ1BQ9UIG0 1483 aaKnown RBP34.04■■■■□ 3.04
SCAMP4-213ENST00000621748 WIZO95785 1651 aa33.77■■■■□ 3
SCAMP4-213ENST00000621748 NESP48681 1621 aa33.75■■■□□ 2.99
SCAMP4-213ENST00000621748 ERCC6Q03468 1493 aa33.69■■■□□ 2.98
SCAMP4-213ENST00000621748 RSF1Q96T23 1441 aaPredicted RBP33.62■■■□□ 2.97
SCAMP4-213ENST00000621748 LAMC3Q9Y6N6 1575 aa33.53■■■□□ 2.96
SCAMP4-213ENST00000621748 CUX2O14529 1486 aa33.46■■■□□ 2.95
SCAMP4-213ENST00000621748 CADPSQ9ULU8 1353 aa33.38■■■□□ 2.93
SCAMP4-213ENST00000621748 TOP2AP11388 1531 aaKnown RBP33.34■■■□□ 2.93
SCAMP4-213ENST00000621748 PDS5BQ9NTI5 1447 aa33.33■■■□□ 2.93
SCAMP4-213ENST00000621748 KIF21AQ7Z4S6 1674 aa33.3■■■□□ 2.92
SCAMP4-213ENST00000621748 THOC2Q8NI27 1593 aaKnown RBP33.26■■■□□ 2.92
SCAMP4-213ENST00000621748 CFTRP13569 1480 aa33.1■■■□□ 2.89
SCAMP4-213ENST00000621748 MRC2Q9UBG0 1479 aa33.01■■■□□ 2.88
SCAMP4-213ENST00000621748 CCDC88BA6NC98 1476 aa32.99■■■□□ 2.87
SCAMP4-213ENST00000621748 FANCD2Q9BXW9 1451 aa32.99■■■□□ 2.87
SCAMP4-213ENST00000621748 DNAJC5Q9H3Z4 198 aa32.98■■■□□ 2.87
SCAMP4-213ENST00000621748 CEP164Q9UPV0 1460 aa32.97■■■□□ 2.87
SCAMP4-213ENST00000621748 WDR62O43379 1518 aa32.91■■■□□ 2.86
SCAMP4-213ENST00000621748 PRDM2Q13029 1718 aa32.79■■■□□ 2.84
SCAMP4-213ENST00000621748 URB2Q14146 1524 aaKnown RBP32.72■■■□□ 2.83
SCAMP4-213ENST00000621748 SUPT5HO00267 1087 aaKnown RBP32.51■■■□□ 2.79
SCAMP4-213ENST00000621748 TOPBP1Q92547 1522 aa32.43■■■□□ 2.78
SCAMP4-213ENST00000621748 ABCC8Q09428 1581 aa32.36■■■□□ 2.77
SCAMP4-213ENST00000621748 DNMBPQ6XZF7 1577 aa32.33■■■□□ 2.77
SCAMP4-213ENST00000621748 IFT140Q96RY7 1462 aa32.3■■■□□ 2.76
SCAMP4-213ENST00000621748 ZNF608Q9ULD9 1512 aaPredicted RBP32.25■■■□□ 2.75
SCAMP4-213ENST00000621748 POLA1P09884 1462 aaPredicted RBP32.13■■■□□ 2.73
SCAMP4-213ENST00000621748 TARBP1Q13395 1621 aaKnown RBP32.11■■■□□ 2.73
SCAMP4-213ENST00000621748 OSCARQ8IYS5 282 aa32.07■■■□□ 2.72
SCAMP4-213ENST00000621748 CUX1P39880 1505 aa32.05■■■□□ 2.72
SCAMP4-213ENST00000621748 EIF4G3O43432 1585 aaKnown RBP32.05■■■□□ 2.72
SCAMP4-213ENST00000621748 RAD54L2Q9Y4B4 1467 aa32.03■■■□□ 2.72
SCAMP4-213ENST00000621748 AQRO60306 1485 aaKnown RBP eCLIP32.02■■■□□ 2.722e-7■■■■■ 53
SCAMP4-213ENST00000621748 SOGA1O94964 1423 aa32■■■□□ 2.71
SCAMP4-213ENST00000621748 FGD5Q6ZNL6 1462 aa32■■■□□ 2.71
SCAMP4-213ENST00000621748 TDRD9Q8NDG6 1382 aaKnown RBP31.9■■■□□ 2.7
SCAMP4-213ENST00000621748 WDR97A6NE52 1622 aa31.76■■■□□ 2.67
SCAMP4-213ENST00000621748 CHD1O14646 1710 aa31.75■■■□□ 2.67
SCAMP4-213ENST00000621748 TRIM41Q8WV44 630 aa31.72■■■□□ 2.67
SCAMP4-213ENST00000621748 FBLN2P98095 1184 aa31.71■■■□□ 2.67
SCAMP4-213ENST00000621748 WRNQ14191 1432 aaPredicted RBP eCLIP31.68■■■□□ 2.66
SCAMP4-213ENST00000621748 SNAPC4Q5SXM2 1469 aa31.67■■■□□ 2.66
SCAMP4-213ENST00000621748 ABCA10Q8WWZ4 1543 aa31.65■■■□□ 2.66
SCAMP4-213ENST00000621748 TOP2BQ02880 1626 aa31.65■■■□□ 2.66
SCAMP4-213ENST00000621748 GRIN2BQ13224 1484 aa31.65■■■□□ 2.66
SCAMP4-213ENST00000621748 SYNJ1O43426 1573 aa31.64■■■□□ 2.66
SCAMP4-213ENST00000621748 BIVM-ERCC5R4GMW8 1640 aa31.64■■■□□ 2.66
SCAMP4-213ENST00000621748 GAPVD1Q14C86 1478 aa31.61■■■□□ 2.65
SCAMP4-213ENST00000621748 MAGI1Q96QZ7 1491 aaPredicted RBP31.59■■■□□ 2.65
SCAMP4-213ENST00000621748 RIMBP3CA6NJZ7 1639 aa31.58■■■□□ 2.65
SCAMP4-213ENST00000621748 RIMBP3BA6NNM3 1639 aa31.58■■■□□ 2.65
SCAMP4-213ENST00000621748 RIMBP3Q9UFD9 1639 aa31.58■■■□□ 2.65
SCAMP4-213ENST00000621748 PBRM1Q86U86 1689 aa31.56■■■□□ 2.64
SCAMP4-213ENST00000621748 ABCA5Q8WWZ7 1642 aa31.56■■■□□ 2.64
SCAMP4-213ENST00000621748 CHMP7Q8WUX9 453 aaPredicted RBP31.55■■■□□ 2.64
SCAMP4-213ENST00000621748 ARHGEF11O15085 1522 aa31.52■■■□□ 2.64
SCAMP4-213ENST00000621748 SYNJ2O15056 1496 aa31.49■■■□□ 2.63
SCAMP4-213ENST00000621748 CLASP1Q7Z460 1538 aa31.38■■■□□ 2.61
SCAMP4-213ENST00000621748 CYB5RLQ6IPT4 315 aa31.31■■■□□ 2.6
SCAMP4-213ENST00000621748 ADAMTS12P58397 1594 aa31.27■■■□□ 2.6
SCAMP4-213ENST00000621748 ARAP1Q96P48 1450 aa31.26■■■□□ 2.59
SCAMP4-213ENST00000621748 ERICH3Q5RHP9 1530 aa31.25■■■□□ 2.59
SCAMP4-213ENST00000621748 GRIN2AQ12879 1464 aa31.25■■■□□ 2.59
SCAMP4-213ENST00000621748 FHAD1B1AJZ9 1412 aa31.23■■■□□ 2.59
SCAMP4-213ENST00000621748 NUP160Q12769 1436 aa31.13■■■□□ 2.57
SCAMP4-213ENST00000621748 CEP170Q5SW79 1584 aa31.13■■■□□ 2.57
SCAMP4-213ENST00000621748 KIF27Q86VH2 1401 aa31.04■■■□□ 2.56
SCAMP4-213ENST00000621748 IGF1RP08069 1367 aa31.02■■■□□ 2.56
SCAMP4-213ENST00000621748 ERCC6L2Q5T890 1561 aa30.96■■■□□ 2.55
SCAMP4-213ENST00000621748 SHROOM2Q13796 1616 aa30.93■■■□□ 2.54
SCAMP4-213ENST00000621748 CUL7Q14999 1698 aa30.88■■■□□ 2.53
SCAMP4-213ENST00000621748 JPH4Q96JJ6 628 aa30.85■■■□□ 2.53
SCAMP4-213ENST00000621748 RUSC2Q8N2Y8 1516 aa30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms