RNA–Protein interactions for RNA: ENST00000621242.1

SNHG28-203, Transcript of small nucleolar RNA host gene 28, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SNHG28, Length 708 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG28-203ENST00000621242 NISCHQ9Y2I1 1504 aa39.65■■■■□ 3.94
SNHG28-203ENST00000621242 ABCC9O60706 1549 aa36.2■■■■□ 3.39
SNHG28-203ENST00000621242 CCDC180Q9P1Z9 1646 aa35.76■■■■□ 3.32
SNHG28-203ENST00000621242 DNAJC5BQ9UF47 199 aa34.35■■■■□ 3.09
SNHG28-203ENST00000621242 RB1CC1Q8TDY2 1594 aa34.24■■■■□ 3.07
SNHG28-203ENST00000621242 NACADO15069 1562 aa33.89■■■■□ 3.02
SNHG28-203ENST00000621242 DCAF8L2P0C7V8 631 aa33.7■■■□□ 2.99
SNHG28-203ENST00000621242 PABPN1Q86U42 306 aaKnown RBP eCLIP33.65■■■□□ 2.98
SNHG28-203ENST00000621242 UNC13AQ9UPW8 1703 aa33.56■■■□□ 2.96
SNHG28-203ENST00000621242 BICRAQ9NZM4 1560 aa33.29■■■□□ 2.92
SNHG28-203ENST00000621242 MYO15BQ96JP2 1530 aa33.25■■■□□ 2.91
SNHG28-203ENST00000621242 ZCCHC6Q5VYS8 1495 aaKnown RBP32.74■■■□□ 2.83
SNHG28-203ENST00000621242 SHROOM4Q9ULL8 1493 aa32.71■■■□□ 2.83
SNHG28-203ENST00000621242 DCAF1Q9Y4B6 1507 aa32.69■■■□□ 2.82
SNHG28-203ENST00000621242 CC2D2AQ9P2K1 1620 aa32.68■■■□□ 2.82
SNHG28-203ENST00000621242 CECR2Q9BXF3 1484 aa32.63■■■□□ 2.81
SNHG28-203ENST00000621242 SCRIBQ14160 1630 aa32.59■■■□□ 2.81
SNHG28-203ENST00000621242 EIF4G1Q04637 1599 aaKnown RBP32.49■■■□□ 2.79
SNHG28-203ENST00000621242 DNAJC5Q9H3Z4 198 aa31.83■■■□□ 2.69
SNHG28-203ENST00000621242 CUX2O14529 1486 aa31.33■■■□□ 2.61
SNHG28-203ENST00000621242 NCAPD3P42695 1498 aa31.29■■■□□ 2.6
SNHG28-203ENST00000621242 ERCC6Q03468 1493 aa31.27■■■□□ 2.6
SNHG28-203ENST00000621242 ATAD2BQ9ULI0 1458 aa31.15■■■□□ 2.58
SNHG28-203ENST00000621242 SMARCA4P51532 1647 aa31.03■■■□□ 2.56
SNHG28-203ENST00000621242 SMARCA2P51531 1590 aa31.03■■■□□ 2.56
SNHG28-203ENST00000621242 HMGXB3Q12766 1538 aa31.02■■■□□ 2.56
SNHG28-203ENST00000621242 NESP48681 1621 aa30.98■■■□□ 2.55
SNHG28-203ENST00000621242 BAZ1BQ9UIG0 1483 aaKnown RBP30.82■■■□□ 2.53
SNHG28-203ENST00000621242 BAZ1AQ9NRL2 1556 aaPredicted RBP30.79■■■□□ 2.52
SNHG28-203ENST00000621242 THOC2Q8NI27 1593 aaKnown RBP30.74■■■□□ 2.51
SNHG28-203ENST00000621242 PEG3Q9GZU2 1588 aa30.71■■■□□ 2.51
SNHG28-203ENST00000621242 LAMC3Q9Y6N6 1575 aa30.67■■■□□ 2.5
SNHG28-203ENST00000621242 KIF21AQ7Z4S6 1674 aa30.6■■■□□ 2.49
SNHG28-203ENST00000621242 MROH2BQ7Z745 1585 aa30.56■■■□□ 2.48
SNHG28-203ENST00000621242 PDS5BQ9NTI5 1447 aa30.49■■■□□ 2.47
SNHG28-203ENST00000621242 CADPSQ9ULU8 1353 aa30.33■■■□□ 2.45
SNHG28-203ENST00000621242 TRIM41Q8WV44 630 aa30.29■■■□□ 2.44
SNHG28-203ENST00000621242 MRC2Q9UBG0 1479 aa30.26■■■□□ 2.44
SNHG28-203ENST00000621242 WDR62O43379 1518 aa30.21■■■□□ 2.43
SNHG28-203ENST00000621242 WIZO95785 1651 aa30.2■■■□□ 2.43
SNHG28-203ENST00000621242 CEP164Q9UPV0 1460 aa30.06■■■□□ 2.4
SNHG28-203ENST00000621242 FANCD2Q9BXW9 1451 aa29.99■■■□□ 2.39
SNHG28-203ENST00000621242 CFTRP13569 1480 aa29.89■■■□□ 2.38
SNHG28-203ENST00000621242 OSCARQ8IYS5 282 aa29.85■■■□□ 2.37
SNHG28-203ENST00000621242 URB2Q14146 1524 aaKnown RBP29.79■■■□□ 2.36
SNHG28-203ENST00000621242 RSF1Q96T23 1441 aaPredicted RBP29.75■■■□□ 2.35
SNHG28-203ENST00000621242 TOP2AP11388 1531 aaKnown RBP29.74■■■□□ 2.35
SNHG28-203ENST00000621242 PRDM2Q13029 1718 aa29.62■■■□□ 2.33
SNHG28-203ENST00000621242 RIMBP3CA6NJZ7 1639 aa29.54■■■□□ 2.32
SNHG28-203ENST00000621242 RIMBP3BA6NNM3 1639 aa29.54■■■□□ 2.32
SNHG28-203ENST00000621242 RIMBP3Q9UFD9 1639 aa29.54■■■□□ 2.32
SNHG28-203ENST00000621242 ZNF608Q9ULD9 1512 aaPredicted RBP29.5■■■□□ 2.31
SNHG28-203ENST00000621242 IFT140Q96RY7 1462 aa29.47■■■□□ 2.31
SNHG28-203ENST00000621242 CCDC88BA6NC98 1476 aa29.43■■■□□ 2.3
SNHG28-203ENST00000621242 TOPBP1Q92547 1522 aa29.39■■■□□ 2.3
SNHG28-203ENST00000621242 ARHGEF11O15085 1522 aa29.38■■■□□ 2.29
SNHG28-203ENST00000621242 EIF4G3O43432 1585 aaKnown RBP29.31■■■□□ 2.28
SNHG28-203ENST00000621242 ABCC8Q09428 1581 aa29.26■■■□□ 2.28
SNHG28-203ENST00000621242 DNMBPQ6XZF7 1577 aa29.24■■■□□ 2.27
SNHG28-203ENST00000621242 CHD1O14646 1710 aa29.22■■■□□ 2.27
SNHG28-203ENST00000621242 CYB5RLQ6IPT4 315 aa29.21■■■□□ 2.27
SNHG28-203ENST00000621242 AQRO60306 1485 aaKnown RBP eCLIP29.18■■■□□ 2.26
SNHG28-203ENST00000621242 TARBP1Q13395 1621 aaKnown RBP29.17■■■□□ 2.26
SNHG28-203ENST00000621242 FBLN2P98095 1184 aa29.09■■■□□ 2.25
SNHG28-203ENST00000621242 ARAP1Q96P48 1450 aa29.06■■■□□ 2.24
SNHG28-203ENST00000621242 POLA1P09884 1462 aaPredicted RBP29.05■■■□□ 2.24
SNHG28-203ENST00000621242 TRHP20396 242 aaPredicted RBP29.03■■■□□ 2.24
SNHG28-203ENST00000621242 RAD54L2Q9Y4B4 1467 aa28.98■■■□□ 2.23
SNHG28-203ENST00000621242 TDRD9Q8NDG6 1382 aaKnown RBP28.93■■■□□ 2.22
SNHG28-203ENST00000621242 SOGA1O94964 1423 aa28.92■■■□□ 2.22
SNHG28-203ENST00000621242 SNAPC4Q5SXM2 1469 aa28.85■■■□□ 2.21
SNHG28-203ENST00000621242 FGD5Q6ZNL6 1462 aa28.82■■■□□ 2.2
SNHG28-203ENST00000621242 CLASP1Q7Z460 1538 aa28.81■■■□□ 2.2
SNHG28-203ENST00000621242 WDR97A6NE52 1622 aa28.8■■■□□ 2.2
SNHG28-203ENST00000621242 CHMP7Q8WUX9 453 aaPredicted RBP28.78■■■□□ 2.2
SNHG28-203ENST00000621242 SYNJ1O43426 1573 aa28.75■■■□□ 2.19
SNHG28-203ENST00000621242 MAGI1Q96QZ7 1491 aaPredicted RBP28.73■■■□□ 2.19
SNHG28-203ENST00000621242 CUX1P39880 1505 aa28.73■■■□□ 2.19
SNHG28-203ENST00000621242 GRIN2BQ13224 1484 aa28.7■■■□□ 2.18
SNHG28-203ENST00000621242 SYNJ2O15056 1496 aa28.66■■■□□ 2.18
SNHG28-203ENST00000621242 PBRM1Q86U86 1689 aa28.62■■■□□ 2.17
SNHG28-203ENST00000621242 GAPVD1Q14C86 1478 aa28.56■■■□□ 2.16
SNHG28-203ENST00000621242 AEBP2Q6ZN18 517 aaPredicted RBP28.48■■■□□ 2.15
SNHG28-203ENST00000621242 ABCA5Q8WWZ7 1642 aa28.47■■■□□ 2.15
SNHG28-203ENST00000621242 ABCA10Q8WWZ4 1543 aa28.45■■■□□ 2.15
SNHG28-203ENST00000621242 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
SNHG28-203ENST00000621242 GRIN2AQ12879 1464 aa28.34■■■□□ 2.13
SNHG28-203ENST00000621242 ADAMTS12P58397 1594 aa28.28■■■□□ 2.12
SNHG28-203ENST00000621242 CEP170Q5SW79 1584 aa28.28■■■□□ 2.12
SNHG28-203ENST00000621242 NUP160Q12769 1436 aa28.25■■■□□ 2.11
SNHG28-203ENST00000621242 WRNQ14191 1432 aaPredicted RBP eCLIP28.24■■■□□ 2.11
SNHG28-203ENST00000621242 SHROOM2Q13796 1616 aa28.2■■■□□ 2.1
SNHG28-203ENST00000621242 SUPT5HO00267 1087 aaKnown RBP28.17■■■□□ 2.1
SNHG28-203ENST00000621242 BIVM-ERCC5R4GMW8 1640 aa28.17■■■□□ 2.1
SNHG28-203ENST00000621242 FHAD1B1AJZ9 1412 aa28.16■■■□□ 2.1
SNHG28-203ENST00000621242 TOP2BQ02880 1626 aa28.15■■■□□ 2.1
SNHG28-203ENST00000621242 KIF13AQ9H1H9 1805 aa28.11■■■□□ 2.09
SNHG28-203ENST00000621242 ERICH3Q5RHP9 1530 aa28.08■■■□□ 2.09
SNHG28-203ENST00000621242 PRG4Q92954 1404 aaPredicted RBP28.03■■■□□ 2.08
SNHG28-203ENST00000621242 JPH4Q96JJ6 628 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms