RNA–Protein interactions for RNA: ENST00000621152.4

SMC6-210, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 3

Gene SMC6, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-210ENST00000621152 NISCHQ9Y2I1 1504 aa50.51■■■■■ 5.68
SMC6-210ENST00000621152 CCDC180Q9P1Z9 1646 aa44.99■■■■■ 4.79
SMC6-210ENST00000621152 ABCC9O60706 1549 aa44.81■■■■■ 4.76
SMC6-210ENST00000621152 DCAF8L2P0C7V8 631 aa42.76■■■■■ 4.44
SMC6-210ENST00000621152 RB1CC1Q8TDY2 1594 aa42.73■■■■■ 4.43
SMC6-210ENST00000621152 NACADO15069 1562 aa42.55■■■■■ 4.4
SMC6-210ENST00000621152 MYO15BQ96JP2 1530 aa42.05■■■■■ 4.32
SMC6-210ENST00000621152 PABPN1Q86U42 306 aaKnown RBP eCLIP41.91■■■■■ 4.3
SMC6-210ENST00000621152 ZCCHC6Q5VYS8 1495 aaKnown RBP41.88■■■■■ 4.29
SMC6-210ENST00000621152 DNAJC5BQ9UF47 199 aa41.79■■■■■ 4.28
SMC6-210ENST00000621152 DCAF1Q9Y4B6 1507 aa41.68■■■■■ 4.26
SMC6-210ENST00000621152 UNC13AQ9UPW8 1703 aa41.65■■■■■ 4.26
SMC6-210ENST00000621152 BICRAQ9NZM4 1560 aa41.46■■■■■ 4.23
SMC6-210ENST00000621152 SCRIBQ14160 1630 aa41.13■■■■■ 4.17
SMC6-210ENST00000621152 SHROOM4Q9ULL8 1493 aa40.88■■■■■ 4.13
SMC6-210ENST00000621152 EIF4G1Q04637 1599 aaKnown RBP40.42■■■■■ 4.06
SMC6-210ENST00000621152 CC2D2AQ9P2K1 1620 aa40.42■■■■■ 4.06
SMC6-210ENST00000621152 CECR2Q9BXF3 1484 aa40.31■■■■■ 4.04
SMC6-210ENST00000621152 NCAPD3P42695 1498 aa39.34■■■■□ 3.89
SMC6-210ENST00000621152 ATAD2BQ9ULI0 1458 aa39.27■■■■□ 3.88
SMC6-210ENST00000621152 SMARCA4P51532 1647 aa39.25■■■■□ 3.87
SMC6-210ENST00000621152 BAZ1AQ9NRL2 1556 aaPredicted RBP39.14■■■■□ 3.86
SMC6-210ENST00000621152 SMARCA2P51531 1590 aa39.13■■■■□ 3.85
SMC6-210ENST00000621152 HMGXB3Q12766 1538 aa38.97■■■■□ 3.83
SMC6-210ENST00000621152 MROH2BQ7Z745 1585 aa38.93■■■■□ 3.82
SMC6-210ENST00000621152 BAZ1BQ9UIG0 1483 aaKnown RBP38.9■■■■□ 3.82
SMC6-210ENST00000621152 PEG3Q9GZU2 1588 aa38.83■■■■□ 3.81
SMC6-210ENST00000621152 ERCC6Q03468 1493 aa38.65■■■■□ 3.78
SMC6-210ENST00000621152 NESP48681 1621 aa38.59■■■■□ 3.77
SMC6-210ENST00000621152 WIZO95785 1651 aa38.45■■■■□ 3.75
SMC6-210ENST00000621152 CUX2O14529 1486 aa38.37■■■■□ 3.73
SMC6-210ENST00000621152 RSF1Q96T23 1441 aaPredicted RBP38.32■■■■□ 3.73
SMC6-210ENST00000621152 LAMC3Q9Y6N6 1575 aa38.31■■■■□ 3.72
SMC6-210ENST00000621152 CADPSQ9ULU8 1353 aa38.21■■■■□ 3.71
SMC6-210ENST00000621152 PDS5BQ9NTI5 1447 aa38.18■■■■□ 3.7
SMC6-210ENST00000621152 DNAJC5Q9H3Z4 198 aa38.07■■■■□ 3.68
SMC6-210ENST00000621152 KIF21AQ7Z4S6 1674 aa37.98■■■■□ 3.67
SMC6-210ENST00000621152 THOC2Q8NI27 1593 aaKnown RBP37.97■■■■□ 3.67
SMC6-210ENST00000621152 TOP2AP11388 1531 aaKnown RBP37.97■■■■□ 3.67
SMC6-210ENST00000621152 CFTRP13569 1480 aa37.79■■■■□ 3.64
SMC6-210ENST00000621152 MRC2Q9UBG0 1479 aa37.77■■■■□ 3.64
SMC6-210ENST00000621152 FANCD2Q9BXW9 1451 aa37.72■■■■□ 3.63
SMC6-210ENST00000621152 CEP164Q9UPV0 1460 aa37.71■■■■□ 3.63
SMC6-210ENST00000621152 CCDC88BA6NC98 1476 aa37.64■■■■□ 3.62
SMC6-210ENST00000621152 WDR62O43379 1518 aa37.6■■■■□ 3.61
SMC6-210ENST00000621152 URB2Q14146 1524 aaKnown RBP37.36■■■■□ 3.57
SMC6-210ENST00000621152 PRDM2Q13029 1718 aa37.24■■■■□ 3.55
SMC6-210ENST00000621152 SUPT5HO00267 1087 aaKnown RBP37.11■■■■□ 3.53
SMC6-210ENST00000621152 TOPBP1Q92547 1522 aa37.04■■■■□ 3.52
SMC6-210ENST00000621152 ABCC8Q09428 1581 aa37■■■■□ 3.51
SMC6-210ENST00000621152 IFT140Q96RY7 1462 aa36.94■■■■□ 3.5
SMC6-210ENST00000621152 OSCARQ8IYS5 282 aa36.89■■■■□ 3.5
SMC6-210ENST00000621152 DNMBPQ6XZF7 1577 aa36.88■■■■□ 3.49
SMC6-210ENST00000621152 ZNF608Q9ULD9 1512 aaPredicted RBP36.86■■■■□ 3.49
SMC6-210ENST00000621152 POLA1P09884 1462 aaPredicted RBP36.68■■■■□ 3.46
SMC6-210ENST00000621152 AQRO60306 1485 aaKnown RBP eCLIP36.64■■■■□ 3.462e-10■■■■□ 22.5
SMC6-210ENST00000621152 SOGA1O94964 1423 aa36.62■■■■□ 3.45
SMC6-210ENST00000621152 TRIM41Q8WV44 630 aa36.62■■■■□ 3.45
SMC6-210ENST00000621152 TARBP1Q13395 1621 aaKnown RBP36.62■■■■□ 3.45
SMC6-210ENST00000621152 RAD54L2Q9Y4B4 1467 aa36.61■■■■□ 3.45
SMC6-210ENST00000621152 EIF4G3O43432 1585 aaKnown RBP36.57■■■■□ 3.44
SMC6-210ENST00000621152 CUX1P39880 1505 aa36.54■■■■□ 3.44
SMC6-210ENST00000621152 FGD5Q6ZNL6 1462 aa36.52■■■■□ 3.44
SMC6-210ENST00000621152 TDRD9Q8NDG6 1382 aaKnown RBP36.52■■■■□ 3.44
SMC6-210ENST00000621152 FBLN2P98095 1184 aa36.44■■■■□ 3.42
SMC6-210ENST00000621152 WDR97A6NE52 1622 aa36.21■■■■□ 3.39
SMC6-210ENST00000621152 CHD1O14646 1710 aa36.21■■■■□ 3.39
SMC6-210ENST00000621152 CHMP7Q8WUX9 453 aaPredicted RBP36.21■■■■□ 3.39
SMC6-210ENST00000621152 SNAPC4Q5SXM2 1469 aa36.2■■■■□ 3.39
SMC6-210ENST00000621152 GRIN2BQ13224 1484 aa36.18■■■■□ 3.38
SMC6-210ENST00000621152 RIMBP3CA6NJZ7 1639 aa36.15■■■■□ 3.38
SMC6-210ENST00000621152 RIMBP3BA6NNM3 1639 aa36.15■■■■□ 3.38
SMC6-210ENST00000621152 RIMBP3Q9UFD9 1639 aa36.15■■■■□ 3.38
SMC6-210ENST00000621152 WRNQ14191 1432 aaPredicted RBP eCLIP36.14■■■■□ 3.38
SMC6-210ENST00000621152 GAPVD1Q14C86 1478 aa36.13■■■■□ 3.37
SMC6-210ENST00000621152 ARHGEF11O15085 1522 aa36.11■■■■□ 3.37
SMC6-210ENST00000621152 ABCA10Q8WWZ4 1543 aa36.11■■■■□ 3.37
SMC6-210ENST00000621152 MAGI1Q96QZ7 1491 aaPredicted RBP36.1■■■■□ 3.37
SMC6-210ENST00000621152 CYB5RLQ6IPT4 315 aa36.03■■■■□ 3.36
SMC6-210ENST00000621152 TOP2BQ02880 1626 aa36.01■■■■□ 3.36
SMC6-210ENST00000621152 SYNJ1O43426 1573 aa36■■■■□ 3.35
SMC6-210ENST00000621152 SYNJ2O15056 1496 aa35.99■■■■□ 3.35
SMC6-210ENST00000621152 BIVM-ERCC5R4GMW8 1640 aa35.97■■■■□ 3.35
SMC6-210ENST00000621152 ABCA5Q8WWZ7 1642 aa35.94■■■■□ 3.34
SMC6-210ENST00000621152 PBRM1Q86U86 1689 aa35.93■■■■□ 3.34
SMC6-210ENST00000621152 CLASP1Q7Z460 1538 aa35.83■■■■□ 3.33
SMC6-210ENST00000621152 ARAP1Q96P48 1450 aa35.79■■■■□ 3.32
SMC6-210ENST00000621152 GRIN2AQ12879 1464 aa35.69■■■■□ 3.3
SMC6-210ENST00000621152 FHAD1B1AJZ9 1412 aa35.68■■■■□ 3.3
SMC6-210ENST00000621152 ERICH3Q5RHP9 1530 aa35.65■■■■□ 3.3
SMC6-210ENST00000621152 ADAMTS12P58397 1594 aa35.64■■■■□ 3.3
SMC6-210ENST00000621152 NUP160Q12769 1436 aa35.56■■■■□ 3.28
SMC6-210ENST00000621152 TRHP20396 242 aaPredicted RBP35.51■■■■□ 3.28
SMC6-210ENST00000621152 CEP170Q5SW79 1584 aa35.51■■■■□ 3.27
SMC6-210ENST00000621152 KIF27Q86VH2 1401 aa35.44■■■■□ 3.26
SMC6-210ENST00000621152 IGF1RP08069 1367 aa35.43■■■■□ 3.26
SMC6-210ENST00000621152 JPH4Q96JJ6 628 aa35.38■■■■□ 3.25
SMC6-210ENST00000621152 ERCC6L2Q5T890 1561 aa35.37■■■■□ 3.25
SMC6-210ENST00000621152 PRG4Q92954 1404 aaPredicted RBP35.26■■■■□ 3.24
SMC6-210ENST00000621152 SHROOM2Q13796 1616 aa35.26■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms