RNA–Protein interactions for RNA: ENST00000619119.4

SEMA3B-214, Transcript of semaphorin 3B, humanhuman

TSL 5

Gene SEMA3B, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-214ENST00000619119 NISCHQ9Y2I1 1504 aa32.82■■■□□ 2.84
SEMA3B-214ENST00000619119 CCDC180Q9P1Z9 1646 aa28.14■■■□□ 2.1
SEMA3B-214ENST00000619119 SHROOM4Q9ULL8 1493 aa27.67■■■□□ 2.02
SEMA3B-214ENST00000619119 DCAF8L2P0C7V8 631 aa27.66■■■□□ 2.02
SEMA3B-214ENST00000619119 ZCCHC6Q5VYS8 1495 aaKnown RBP27.61■■■□□ 2.01
SEMA3B-214ENST00000619119 DCAF1Q9Y4B6 1507 aa26.85■■□□□ 1.89
SEMA3B-214ENST00000619119 SUPT5HO00267 1087 aaKnown RBP26.83■■□□□ 1.89
SEMA3B-214ENST00000619119 ABCC9O60706 1549 aa26.83■■□□□ 1.89
SEMA3B-214ENST00000619119 PELP1Q8IZL8 1130 aaKnown RBP26.72■■□□□ 1.87
SEMA3B-214ENST00000619119 HRCP23327 699 aa26.67■■□□□ 1.86
SEMA3B-214ENST00000619119 SCRIBQ14160 1630 aa26.39■■□□□ 1.82
SEMA3B-214ENST00000619119 MYO15BQ96JP2 1530 aa26.31■■□□□ 1.8
SEMA3B-214ENST00000619119 PPARGC1BQ86YN6 1023 aaKnown RBP26.28■■□□□ 1.8
SEMA3B-214ENST00000619119 NACADO15069 1562 aa26.22■■□□□ 1.79
SEMA3B-214ENST00000619119 RB1CC1Q8TDY2 1594 aa25.97■■□□□ 1.75
SEMA3B-214ENST00000619119 PCGF6Q9BYE7 350 aa25.91■■□□□ 1.74
SEMA3B-214ENST00000619119 MYT1Q01538 1121 aa25.84■■□□□ 1.73
SEMA3B-214ENST00000619119 RSF1Q96T23 1441 aaPredicted RBP25.74■■□□□ 1.71
SEMA3B-214ENST00000619119 SCAF1Q9H7N4 1312 aaKnown RBP25.71■■□□□ 1.71
SEMA3B-214ENST00000619119 CECR2Q9BXF3 1484 aa25.7■■□□□ 1.7
SEMA3B-214ENST00000619119 CHIC1Q5VXU3 224 aa25.65■■□□□ 1.7
SEMA3B-214ENST00000619119 PABPN1Q86U42 306 aaKnown RBP eCLIP25.57■■□□□ 1.689e-8■■■■□ 19.4
SEMA3B-214ENST00000619119 MROH2BQ7Z745 1585 aa25.51■■□□□ 1.67
SEMA3B-214ENST00000619119 UNC13AQ9UPW8 1703 aa25.5■■□□□ 1.67
SEMA3B-214ENST00000619119 WIZO95785 1651 aa25.33■■□□□ 1.64
SEMA3B-214ENST00000619119 BAZ1AQ9NRL2 1556 aaPredicted RBP25.26■■□□□ 1.63
SEMA3B-214ENST00000619119 BICRAQ9NZM4 1560 aa25.25■■□□□ 1.63
SEMA3B-214ENST00000619119 SMARCA4P51532 1647 aa25.12■■□□□ 1.61
SEMA3B-214ENST00000619119 TRIM41Q8WV44 630 aa25■■□□□ 1.59
SEMA3B-214ENST00000619119 LOC105371045A0A1W2PR82 267 aa24.93■■□□□ 1.58
SEMA3B-214ENST00000619119 TOP2AP11388 1531 aaKnown RBP24.89■■□□□ 1.58
SEMA3B-214ENST00000619119 FAM9AQ8IZU1 332 aaPredicted RBP24.85■■□□□ 1.57
SEMA3B-214ENST00000619119 CCDC88BA6NC98 1476 aa24.81■■□□□ 1.56
SEMA3B-214ENST00000619119 ACIN1Q9UKV3 1341 aaKnown RBP24.8■■□□□ 1.56
SEMA3B-214ENST00000619119 NEUROD1Q13562 356 aa24.77■■□□□ 1.56
SEMA3B-214ENST00000619119 SMARCA2P51531 1590 aa24.74■■□□□ 1.55
SEMA3B-214ENST00000619119 GTF3C3Q9Y5Q9 886 aa24.73■■□□□ 1.55
SEMA3B-214ENST00000619119 EHMT2Q96KQ7 1210 aa24.72■■□□□ 1.55
SEMA3B-214ENST00000619119 TRIM26Q12899 539 aaPredicted RBP24.72■■□□□ 1.55
SEMA3B-214ENST00000619119 ZEB1P37275 1124 aaPredicted RBP24.7■■□□□ 1.54
SEMA3B-214ENST00000619119 ATAD2BQ9ULI0 1458 aa24.68■■□□□ 1.54
SEMA3B-214ENST00000619119 PEG3Q9GZU2 1588 aa24.61■■□□□ 1.53
SEMA3B-214ENST00000619119 BAZ1BQ9UIG0 1483 aaKnown RBP24.6■■□□□ 1.53
SEMA3B-214ENST00000619119 EIF4G1Q04637 1599 aaKnown RBP24.59■■□□□ 1.53
SEMA3B-214ENST00000619119 ABCC8Q09428 1581 aa24.56■■□□□ 1.52
SEMA3B-214ENST00000619119 CENPBP07199 599 aaPredicted RBP24.4■■□□□ 1.5
SEMA3B-214ENST00000619119 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
SEMA3B-214ENST00000619119 BCL11AQ9H165 835 aa24.32■■□□□ 1.48
SEMA3B-214ENST00000619119 NCAPD3P42695 1498 aa24.29■■□□□ 1.48
SEMA3B-214ENST00000619119 WRNQ14191 1432 aaPredicted RBP eCLIP24.23■■□□□ 1.47
SEMA3B-214ENST00000619119 SOGA1O94964 1423 aa24.21■■□□□ 1.47
SEMA3B-214ENST00000619119 HMGXB3Q12766 1538 aa24.2■■□□□ 1.46
SEMA3B-214ENST00000619119 RUSC2Q8N2Y8 1516 aa24.12■■□□□ 1.45
SEMA3B-214ENST00000619119 SYNJ1O43426 1573 aa24.09■■□□□ 1.45
SEMA3B-214ENST00000619119 CC2D2AQ9P2K1 1620 aa24.08■■□□□ 1.45
SEMA3B-214ENST00000619119 DIEXFQ68CQ4 756 aaKnown RBP24.03■■□□□ 1.44
SEMA3B-214ENST00000619119 CSRNP3Q8WYN3 585 aa24.03■■□□□ 1.44
SEMA3B-214ENST00000619119 UBTFP17480 764 aaKnown RBP23.95■■□□□ 1.42
SEMA3B-214ENST00000619119 YTHDC1Q96MU7 727 aaKnown RBP23.92■■□□□ 1.42
SEMA3B-214ENST00000619119 CFTRP13569 1480 aa23.91■■□□□ 1.42
SEMA3B-214ENST00000619119 PRKCSHP14314 528 aaPredicted RBP23.88■■□□□ 1.41
SEMA3B-214ENST00000619119 EEA1Q15075 1411 aa23.88■■□□□ 1.41
SEMA3B-214ENST00000619119 CADPSQ9ULU8 1353 aa23.82■■□□□ 1.4
SEMA3B-214ENST00000619119 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
SEMA3B-214ENST00000619119 ANP32EQ9BTT0 268 aa23.79■■□□□ 1.4
SEMA3B-214ENST00000619119 CUX1P39880 1505 aa23.78■■□□□ 1.4
SEMA3B-214ENST00000619119 DNAJC5BQ9UF47 199 aa23.78■■□□□ 1.4
SEMA3B-214ENST00000619119 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.77■■□□□ 1.4
SEMA3B-214ENST00000619119 CEP162Q5TB80 1403 aa23.76■■□□□ 1.39
SEMA3B-214ENST00000619119 RANGAP1P46060 587 aaPredicted RBP23.75■■□□□ 1.39
SEMA3B-214ENST00000619119 GOLGA3Q08378 1498 aa23.73■■□□□ 1.39
SEMA3B-214ENST00000619119 TNIKQ9UKE5 1360 aa23.73■■□□□ 1.39
SEMA3B-214ENST00000619119 CCER1Q8TC90 406 aaPredicted RBP23.73■■□□□ 1.39
SEMA3B-214ENST00000619119 BIVM-ERCC5R4GMW8 1640 aa23.71■■□□□ 1.39
SEMA3B-214ENST00000619119 NESP48681 1621 aa23.67■■□□□ 1.38
SEMA3B-214ENST00000619119 CEP164Q9UPV0 1460 aa23.67■■□□□ 1.38
SEMA3B-214ENST00000619119 RAPGEF2Q9Y4G8 1499 aa23.64■■□□□ 1.37
SEMA3B-214ENST00000619119 FANCD2Q9BXW9 1451 aa23.59■■□□□ 1.37
SEMA3B-214ENST00000619119 PRDM2Q13029 1718 aa23.58■■□□□ 1.36
SEMA3B-214ENST00000619119 KIF21BO75037 1637 aa23.56■■□□□ 1.36
SEMA3B-214ENST00000619119 KIF27Q86VH2 1401 aa23.54■■□□□ 1.36
SEMA3B-214ENST00000619119 FGD5Q6ZNL6 1462 aa23.5■■□□□ 1.35
SEMA3B-214ENST00000619119 CUX2O14529 1486 aa23.48■■□□□ 1.35
SEMA3B-214ENST00000619119 CLIP1P30622 1438 aa23.48■■□□□ 1.35
SEMA3B-214ENST00000619119 PRXQ9BXM0 1461 aa23.42■■□□□ 1.34
SEMA3B-214ENST00000619119 TSHZ2Q9NRE2 1034 aa23.4■■□□□ 1.34
SEMA3B-214ENST00000619119 RAD54L2Q9Y4B4 1467 aa23.38■■□□□ 1.33
SEMA3B-214ENST00000619119 MIER1Q8N108 512 aa23.36■■□□□ 1.33
SEMA3B-214ENST00000619119 LAMC3Q9Y6N6 1575 aa23.34■■□□□ 1.33
SEMA3B-214ENST00000619119 TOPBP1Q92547 1522 aa23.34■■□□□ 1.33
SEMA3B-214ENST00000619119 IGF1RP08069 1367 aa23.34■■□□□ 1.33
SEMA3B-214ENST00000619119 ZNF316A6NFI3 1004 aaPredicted RBP23.33■■□□□ 1.33
SEMA3B-214ENST00000619119 ERICH3Q5RHP9 1530 aa23.32■■□□□ 1.32
SEMA3B-214ENST00000619119 DNMBPQ6XZF7 1577 aa23.31■■□□□ 1.32
SEMA3B-214ENST00000619119 POLA1P09884 1462 aaPredicted RBP23.3■■□□□ 1.32
SEMA3B-214ENST00000619119 SUPT16HQ9Y5B9 1047 aaKnown RBP23.3■■□□□ 1.32
SEMA3B-214ENST00000619119 PDS5BQ9NTI5 1447 aa23.29■■□□□ 1.32
SEMA3B-214ENST00000619119 URB2Q14146 1524 aaKnown RBP23.27■■□□□ 1.32
SEMA3B-214ENST00000619119 CARMIL1Q5VZK9 1371 aa23.25■■□□□ 1.31
SEMA3B-214ENST00000619119 APLP2Q06481 763 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms