RNA–Protein interactions for RNA: ENST00000614703.4

SNX9-202, Transcript of sorting nexin 9, humanhuman

TSL 4

Gene SNX9, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9-202ENST00000614703 NISCHQ9Y2I1 1504 aa24.54■■□□□ 1.52
SNX9-202ENST00000614703 ABCC9O60706 1549 aa22.51■■□□□ 1.19
SNX9-202ENST00000614703 CCDC180Q9P1Z9 1646 aa22.25■■□□□ 1.15
SNX9-202ENST00000614703 DNAJC5BQ9UF47 199 aa21.37■■□□□ 1.01
SNX9-202ENST00000614703 RB1CC1Q8TDY2 1594 aa21.36■■□□□ 1.01
SNX9-202ENST00000614703 NACADO15069 1562 aa21.13■□□□□ 0.97
SNX9-202ENST00000614703 DCAF8L2P0C7V8 631 aa20.87■□□□□ 0.93
SNX9-202ENST00000614703 PABPN1Q86U42 306 aaKnown RBP eCLIP20.87■□□□□ 0.93
SNX9-202ENST00000614703 UNC13AQ9UPW8 1703 aa20.8■□□□□ 0.92
SNX9-202ENST00000614703 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
SNX9-202ENST00000614703 BICRAQ9NZM4 1560 aa20.65■□□□□ 0.9
SNX9-202ENST00000614703 SHROOM4Q9ULL8 1493 aa20.49■□□□□ 0.87
SNX9-202ENST00000614703 CECR2Q9BXF3 1484 aa20.37■□□□□ 0.85
SNX9-202ENST00000614703 CC2D2AQ9P2K1 1620 aa20.35■□□□□ 0.85
SNX9-202ENST00000614703 DCAF1Q9Y4B6 1507 aa20.31■□□□□ 0.84
SNX9-202ENST00000614703 ZCCHC6Q5VYS8 1495 aaKnown RBP20.24■□□□□ 0.83
SNX9-202ENST00000614703 EIF4G1Q04637 1599 aaKnown RBP20.22■□□□□ 0.83
SNX9-202ENST00000614703 SCRIBQ14160 1630 aa20.16■□□□□ 0.82
SNX9-202ENST00000614703 DNAJC5Q9H3Z4 198 aa20.02■□□□□ 0.8
SNX9-202ENST00000614703 CUX2O14529 1486 aa19.66■□□□□ 0.74
SNX9-202ENST00000614703 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
SNX9-202ENST00000614703 NCAPD3P42695 1498 aa19.48■□□□□ 0.71
SNX9-202ENST00000614703 SMARCA2P51531 1590 aa19.33■□□□□ 0.69
SNX9-202ENST00000614703 ATAD2BQ9ULI0 1458 aa19.33■□□□□ 0.68
SNX9-202ENST00000614703 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
SNX9-202ENST00000614703 SMARCA4P51532 1647 aa19.22■□□□□ 0.67
SNX9-202ENST00000614703 NESP48681 1621 aa19.19■□□□□ 0.66
SNX9-202ENST00000614703 BAZ1BQ9UIG0 1483 aaKnown RBP19.16■□□□□ 0.66
SNX9-202ENST00000614703 THOC2Q8NI27 1593 aaKnown RBP19.13■□□□□ 0.65
SNX9-202ENST00000614703 LAMC3Q9Y6N6 1575 aa19.13■□□□□ 0.65
SNX9-202ENST00000614703 BAZ1AQ9NRL2 1556 aaPredicted RBP19.11■□□□□ 0.65
SNX9-202ENST00000614703 PEG3Q9GZU2 1588 aa19.06■□□□□ 0.64
SNX9-202ENST00000614703 PDS5BQ9NTI5 1447 aa19.05■□□□□ 0.64
SNX9-202ENST00000614703 KIF21AQ7Z4S6 1674 aa18.99■□□□□ 0.63
SNX9-202ENST00000614703 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
SNX9-202ENST00000614703 CADPSQ9ULU8 1353 aa18.86■□□□□ 0.61
SNX9-202ENST00000614703 MRC2Q9UBG0 1479 aa18.85■□□□□ 0.61
SNX9-202ENST00000614703 MROH2BQ7Z745 1585 aa18.85■□□□□ 0.61
SNX9-202ENST00000614703 WDR62O43379 1518 aa18.81■□□□□ 0.6
SNX9-202ENST00000614703 CEP164Q9UPV0 1460 aa18.71■□□□□ 0.59
SNX9-202ENST00000614703 OSCARQ8IYS5 282 aa18.69■□□□□ 0.58
SNX9-202ENST00000614703 FANCD2Q9BXW9 1451 aa18.64■□□□□ 0.57
SNX9-202ENST00000614703 WIZO95785 1651 aa18.62■□□□□ 0.57
SNX9-202ENST00000614703 CFTRP13569 1480 aa18.56■□□□□ 0.56
SNX9-202ENST00000614703 URB2Q14146 1524 aaKnown RBP18.46■□□□□ 0.55
SNX9-202ENST00000614703 RIMBP3CA6NJZ7 1639 aa18.43■□□□□ 0.54
SNX9-202ENST00000614703 RIMBP3BA6NNM3 1639 aa18.43■□□□□ 0.54
SNX9-202ENST00000614703 RIMBP3Q9UFD9 1639 aa18.43■□□□□ 0.54
SNX9-202ENST00000614703 TOP2AP11388 1531 aaKnown RBP18.4■□□□□ 0.54
SNX9-202ENST00000614703 PRDM2Q13029 1718 aa18.4■□□□□ 0.54
SNX9-202ENST00000614703 IFT140Q96RY7 1462 aa18.37■□□□□ 0.53
SNX9-202ENST00000614703 RSF1Q96T23 1441 aaPredicted RBP18.34■□□□□ 0.53
SNX9-202ENST00000614703 ARHGEF11O15085 1522 aa18.33■□□□□ 0.53
SNX9-202ENST00000614703 ZNF608Q9ULD9 1512 aaPredicted RBP18.28■□□□□ 0.52
SNX9-202ENST00000614703 ABCC8Q09428 1581 aa18.27■□□□□ 0.52
SNX9-202ENST00000614703 CYB5RLQ6IPT4 315 aa18.23■□□□□ 0.51
SNX9-202ENST00000614703 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
SNX9-202ENST00000614703 EIF4G3O43432 1585 aaKnown RBP18.21■□□□□ 0.51
SNX9-202ENST00000614703 TRHP20396 242 aaPredicted RBP18.19■□□□□ 0.5
SNX9-202ENST00000614703 CCDC88BA6NC98 1476 aa18.16■□□□□ 0.5
SNX9-202ENST00000614703 DNMBPQ6XZF7 1577 aa18.16■□□□□ 0.5
SNX9-202ENST00000614703 CHD1O14646 1710 aa18.15■□□□□ 0.5
SNX9-202ENST00000614703 ARAP1Q96P48 1450 aa18.1■□□□□ 0.49
SNX9-202ENST00000614703 TARBP1Q13395 1621 aaKnown RBP18.09■□□□□ 0.49
SNX9-202ENST00000614703 FBLN2P98095 1184 aa18.09■□□□□ 0.49
SNX9-202ENST00000614703 AQRO60306 1485 aaKnown RBP eCLIP18.08■□□□□ 0.492e-7■■■■■ 29.8
SNX9-202ENST00000614703 POLA1P09884 1462 aaPredicted RBP18.01■□□□□ 0.47
SNX9-202ENST00000614703 WDR97A6NE52 1622 aa17.99■□□□□ 0.47
SNX9-202ENST00000614703 AEBP2Q6ZN18 517 aaPredicted RBP17.99■□□□□ 0.47
SNX9-202ENST00000614703 SOGA1O94964 1423 aa17.95■□□□□ 0.46
SNX9-202ENST00000614703 SYNJ1O43426 1573 aa17.95■□□□□ 0.46
SNX9-202ENST00000614703 CHMP7Q8WUX9 453 aaPredicted RBP17.93■□□□□ 0.46
SNX9-202ENST00000614703 CLASP1Q7Z460 1538 aa17.93■□□□□ 0.46
SNX9-202ENST00000614703 TDRD9Q8NDG6 1382 aaKnown RBP17.91■□□□□ 0.46
SNX9-202ENST00000614703 SNAPC4Q5SXM2 1469 aa17.91■□□□□ 0.46
SNX9-202ENST00000614703 MAGI1Q96QZ7 1491 aaPredicted RBP17.91■□□□□ 0.46
SNX9-202ENST00000614703 RAD54L2Q9Y4B4 1467 aa17.91■□□□□ 0.46
SNX9-202ENST00000614703 GRIN2BQ13224 1484 aa17.86■□□□□ 0.45
SNX9-202ENST00000614703 SYNJ2O15056 1496 aa17.84■□□□□ 0.45
SNX9-202ENST00000614703 FGD5Q6ZNL6 1462 aa17.84■□□□□ 0.45
SNX9-202ENST00000614703 GAPVD1Q14C86 1478 aa17.78■□□□□ 0.44
SNX9-202ENST00000614703 PBRM1Q86U86 1689 aa17.74■□□□□ 0.43
SNX9-202ENST00000614703 CUX1P39880 1505 aa17.74■□□□□ 0.43
SNX9-202ENST00000614703 ABCA10Q8WWZ4 1543 aa17.65■□□□□ 0.42
SNX9-202ENST00000614703 ABCA5Q8WWZ7 1642 aa17.64■□□□□ 0.41
SNX9-202ENST00000614703 GRIN2AQ12879 1464 aa17.61■□□□□ 0.41
SNX9-202ENST00000614703 CEP170Q5SW79 1584 aa17.57■□□□□ 0.4
SNX9-202ENST00000614703 NUP160Q12769 1436 aa17.55■□□□□ 0.4
SNX9-202ENST00000614703 ERCC6L2Q5T890 1561 aa17.54■□□□□ 0.4
SNX9-202ENST00000614703 WRNQ14191 1432 aaPredicted RBP eCLIP17.54■□□□□ 0.49e-6■■■■■ 50.1
SNX9-202ENST00000614703 ADAMTS12P58397 1594 aa17.53■□□□□ 0.4
SNX9-202ENST00000614703 SHROOM2Q13796 1616 aa17.52■□□□□ 0.4
SNX9-202ENST00000614703 FHAD1B1AJZ9 1412 aa17.5■□□□□ 0.39
SNX9-202ENST00000614703 KIF13AQ9H1H9 1805 aa17.49■□□□□ 0.39
SNX9-202ENST00000614703 ERICH3Q5RHP9 1530 aa17.45■□□□□ 0.38
SNX9-202ENST00000614703 NPM1P06748 294 aaKnown RBP eCLIP17.43■□□□□ 0.38
SNX9-202ENST00000614703 PRG4Q92954 1404 aaPredicted RBP17.42■□□□□ 0.38
SNX9-202ENST00000614703 TOP2BQ02880 1626 aa17.41■□□□□ 0.38
SNX9-202ENST00000614703 BIVM-ERCC5R4GMW8 1640 aa17.41■□□□□ 0.38
SNX9-202ENST00000614703 JPH4Q96JJ6 628 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms