RNA–Protein interactions for RNA: ENST00000614337.4

KNL1-213, Transcript of kinetochore scaffold 1, humanhuman

TSL 1 (best)

Gene KNL1, Length 3,211 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNL1-213ENST00000614337 NISCHQ9Y2I1 1504 aa13.43□□□□□ -0.26
KNL1-213ENST00000614337 DCAF8L2P0C7V8 631 aa12.6□□□□□ -0.39
KNL1-213ENST00000614337 SHROOM4Q9ULL8 1493 aa12.22□□□□□ -0.45
KNL1-213ENST00000614337 PELP1Q8IZL8 1130 aaKnown RBP12.12□□□□□ -0.47
KNL1-213ENST00000614337 SUPT5HO00267 1087 aaKnown RBP11.86□□□□□ -0.51
KNL1-213ENST00000614337 MYT1Q01538 1121 aa11.83□□□□□ -0.52
KNL1-213ENST00000614337 HRCP23327 699 aa11.67□□□□□ -0.54
KNL1-213ENST00000614337 ABCC9O60706 1549 aa11.66□□□□□ -0.54
KNL1-213ENST00000614337 EHMT2Q96KQ7 1210 aa11.44□□□□□ -0.58
KNL1-213ENST00000614337 PABPN1Q86U42 306 aaKnown RBP eCLIP11.41□□□□□ -0.58
KNL1-213ENST00000614337 PPARGC1BQ86YN6 1023 aaKnown RBP11.41□□□□□ -0.58
KNL1-213ENST00000614337 SLC24A1O60721 1099 aa11.33□□□□□ -0.59
KNL1-213ENST00000614337 SCAF1Q9H7N4 1312 aaKnown RBP11.31□□□□□ -0.6
KNL1-213ENST00000614337 PCGF6Q9BYE7 350 aa11.25□□□□□ -0.61
KNL1-213ENST00000614337 TTBK1Q5TCY1 1321 aaPredicted RBP11.22□□□□□ -0.61
KNL1-213ENST00000614337 ZCCHC6Q5VYS8 1495 aaKnown RBP11.16□□□□□ -0.62
KNL1-213ENST00000614337 FAM9AQ8IZU1 332 aaPredicted RBP11.15□□□□□ -0.62
KNL1-213ENST00000614337 CCDC180Q9P1Z9 1646 aa11.09□□□□□ -0.63
KNL1-213ENST00000614337 SCRIBQ14160 1630 aa11.08□□□□□ -0.64
KNL1-213ENST00000614337 BCL11AQ9H165 835 aa10.93□□□□□ -0.66
KNL1-213ENST00000614337 ACIN1Q9UKV3 1341 aaKnown RBP10.92□□□□□ -0.66
KNL1-213ENST00000614337 CHIC1Q5VXU3 224 aa10.9□□□□□ -0.66
KNL1-213ENST00000614337 LOC105371045A0A1W2PR82 267 aa10.9□□□□□ -0.66
KNL1-213ENST00000614337 RANGAP1P46060 587 aaPredicted RBP10.9□□□□□ -0.67
KNL1-213ENST00000614337 GTF3C3Q9Y5Q9 886 aa10.89□□□□□ -0.67
KNL1-213ENST00000614337 CENPBP07199 599 aaPredicted RBP10.88□□□□□ -0.67
KNL1-213ENST00000614337 PRKCSHP14314 528 aaPredicted RBP10.88□□□□□ -0.67
KNL1-213ENST00000614337 MYO15BQ96JP2 1530 aa10.86□□□□□ -0.67
KNL1-213ENST00000614337 NEUROD1Q13562 356 aa10.84□□□□□ -0.67
KNL1-213ENST00000614337 CECR2Q9BXF3 1484 aa10.84□□□□□ -0.67
KNL1-213ENST00000614337 ZEB1P37275 1124 aaPredicted RBP10.84□□□□□ -0.67
KNL1-213ENST00000614337 PLPPR3Q6T4P5 718 aa10.83□□□□□ -0.68
KNL1-213ENST00000614337 TRIM41Q8WV44 630 aa10.8□□□□□ -0.68
KNL1-213ENST00000614337 DCAF1Q9Y4B6 1507 aa10.79□□□□□ -0.68
KNL1-213ENST00000614337 ERICH6Q7L0X2 663 aa10.73□□□□□ -0.69
KNL1-213ENST00000614337 TRIM26Q12899 539 aaPredicted RBP10.71□□□□□ -0.69
KNL1-213ENST00000614337 RSF1Q96T23 1441 aaPredicted RBP10.68□□□□□ -0.7
KNL1-213ENST00000614337 DNAJC5BQ9UF47 199 aa10.65□□□□□ -0.7
KNL1-213ENST00000614337 RB1CC1Q8TDY2 1594 aa10.65□□□□□ -0.7
KNL1-213ENST00000614337 NACADO15069 1562 aa10.61□□□□□ -0.71
KNL1-213ENST00000614337 MROH2BQ7Z745 1585 aa10.6□□□□□ -0.71
KNL1-213ENST00000614337 ANP32EQ9BTT0 268 aa10.6□□□□□ -0.71
KNL1-213ENST00000614337 AEBP2Q6ZN18 517 aaPredicted RBP10.58□□□□□ -0.72
KNL1-213ENST00000614337 RTN4Q9NQC3 1192 aaKnown RBP10.52□□□□□ -0.73
KNL1-213ENST00000614337 UBTFP17480 764 aaKnown RBP10.51□□□□□ -0.73
KNL1-213ENST00000614337 APLP2Q06481 763 aa10.51□□□□□ -0.73
KNL1-213ENST00000614337 DIEXFQ68CQ4 756 aaKnown RBP10.49□□□□□ -0.73
KNL1-213ENST00000614337 CSRNP3Q8WYN3 585 aa10.48□□□□□ -0.73
KNL1-213ENST00000614337 WIZO95785 1651 aa10.48□□□□□ -0.73
KNL1-213ENST00000614337 YTHDC1Q96MU7 727 aaKnown RBP10.43□□□□□ -0.74
KNL1-213ENST00000614337 ATP1B4Q9UN42 357 aaPredicted RBP10.42□□□□□ -0.74
KNL1-213ENST00000614337 BICRAQ9NZM4 1560 aa10.33□□□□□ -0.76
KNL1-213ENST00000614337 P3H3Q8IVL6 736 aa10.33□□□□□ -0.76
KNL1-213ENST00000614337 ABCC8Q09428 1581 aa10.33□□□□□ -0.76
KNL1-213ENST00000614337 CCDC88BA6NC98 1476 aa10.33□□□□□ -0.76
KNL1-213ENST00000614337 ARID3CA6NKF2 412 aa10.32□□□□□ -0.76
KNL1-213ENST00000614337 BAZ1BQ9UIG0 1483 aaKnown RBP10.3□□□□□ -0.76
KNL1-213ENST00000614337 BAZ1AQ9NRL2 1556 aaPredicted RBP10.29□□□□□ -0.76
KNL1-213ENST00000614337 CCER1Q8TC90 406 aaPredicted RBP10.28□□□□□ -0.76
KNL1-213ENST00000614337 TSHZ2Q9NRE2 1034 aa10.28□□□□□ -0.76
KNL1-213ENST00000614337 FBLN2P98095 1184 aa10.28□□□□□ -0.76
KNL1-213ENST00000614337 UNC13AQ9UPW8 1703 aa10.26□□□□□ -0.77
KNL1-213ENST00000614337 ATAD2BQ9ULI0 1458 aa10.25□□□□□ -0.77
KNL1-213ENST00000614337 SOGA1O94964 1423 aa10.24□□□□□ -0.77
KNL1-213ENST00000614337 SMARCA4P51532 1647 aa10.23□□□□□ -0.77
KNL1-213ENST00000614337 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.22□□□□□ -0.77
KNL1-213ENST00000614337 ITGAEP38570 1179 aa10.22□□□□□ -0.77
KNL1-213ENST00000614337 RUSC2Q8N2Y8 1516 aa10.22□□□□□ -0.77
KNL1-213ENST00000614337 ANO8Q9HCE9 1232 aaPredicted RBP10.2□□□□□ -0.78
KNL1-213ENST00000614337 SUPT16HQ9Y5B9 1047 aaKnown RBP10.19□□□□□ -0.78
KNL1-213ENST00000614337 NESP48681 1621 aa10.17□□□□□ -0.78
KNL1-213ENST00000614337 CLSPNQ9HAW4 1339 aa10.17□□□□□ -0.78
KNL1-213ENST00000614337 PHF23Q9BUL5 403 aaPredicted RBP10.16□□□□□ -0.78
KNL1-213ENST00000614337 EIF4G1Q04637 1599 aaKnown RBP10.16□□□□□ -0.78
KNL1-213ENST00000614337 HNRNPUL2Q1KMD3 747 aaKnown RBP10.14□□□□□ -0.79
KNL1-213ENST00000614337 ZNF316A6NFI3 1004 aaPredicted RBP10.14□□□□□ -0.79
KNL1-213ENST00000614337 KCNA4P22459 653 aa10.14□□□□□ -0.79
KNL1-213ENST00000614337 MIER1Q8N108 512 aa10.13□□□□□ -0.79
KNL1-213ENST00000614337 WRNQ14191 1432 aaPredicted RBP eCLIP10.12□□□□□ -0.79
KNL1-213ENST00000614337 TOP2AP11388 1531 aaKnown RBP10.09□□□□□ -0.79
KNL1-213ENST00000614337 SMARCA2P51531 1590 aa10.08□□□□□ -0.8
KNL1-213ENST00000614337 TDRD9Q8NDG6 1382 aaKnown RBP10.07□□□□□ -0.8
KNL1-213ENST00000614337 CC2D2AQ9P2K1 1620 aa10.06□□□□□ -0.8
KNL1-213ENST00000614337 UBE2Q2Q8WVN8 375 aa10.04□□□□□ -0.8
KNL1-213ENST00000614337 EIF5BO60841 1220 aaKnown RBP10.03□□□□□ -0.8
KNL1-213ENST00000614337 RBM19Q9Y4C8 960 aaKnown RBP10.03□□□□□ -0.8
KNL1-213ENST00000614337 SALL2Q9Y467 1007 aaPredicted RBP10.02□□□□□ -0.81
KNL1-213ENST00000614337 MYT1LQ9UL68 1186 aa10.02□□□□□ -0.81
KNL1-213ENST00000614337 CCDC136Q96JN2 1154 aa10.01□□□□□ -0.81
KNL1-213ENST00000614337 CADPSQ9ULU8 1353 aa10□□□□□ -0.81
KNL1-213ENST00000614337 BCANQ96GW7 911 aa9.99□□□□□ -0.81
KNL1-213ENST00000614337 DAXXQ9UER7 740 aaPredicted RBP9.99□□□□□ -0.81
KNL1-213ENST00000614337 DEKP35659 375 aaKnown RBP9.99□□□□□ -0.81
KNL1-213ENST00000614337 RAD54L2Q9Y4B4 1467 aa9.98□□□□□ -0.81
KNL1-213ENST00000614337 NCAPD3P42695 1498 aa9.97□□□□□ -0.81
KNL1-213ENST00000614337 CUX2O14529 1486 aa9.95□□□□□ -0.82
KNL1-213ENST00000614337 ERCC6Q03468 1493 aa9.94□□□□□ -0.82
KNL1-213ENST00000614337 ERICH6BQ5W0A0 696 aa9.94□□□□□ -0.82
KNL1-213ENST00000614337 MSH5O43196 834 aa9.93□□□□□ -0.82
KNL1-213ENST00000614337 FAM50AQ14320 339 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms