RNA–Protein interactions for RNA: ENST00000614239.1

LHX1-201, Transcript of LIM homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LHX1, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1-201ENST00000614239 NISCHQ9Y2I1 1504 aa26.86■■□□□ 1.89
LHX1-201ENST00000614239 SHROOM4Q9ULL8 1493 aa23.79■■□□□ 1.4
LHX1-201ENST00000614239 PELP1Q8IZL8 1130 aaKnown RBP23.74■■□□□ 1.39
LHX1-201ENST00000614239 HRCP23327 699 aa23.68■■□□□ 1.38
LHX1-201ENST00000614239 PPARGC1BQ86YN6 1023 aaKnown RBP23.67■■□□□ 1.38
LHX1-201ENST00000614239 DCAF8L2P0C7V8 631 aa23.54■■□□□ 1.36
LHX1-201ENST00000614239 SUPT5HO00267 1087 aaKnown RBP23.51■■□□□ 1.35
LHX1-201ENST00000614239 PCGF6Q9BYE7 350 aa23.45■■□□□ 1.34
LHX1-201ENST00000614239 CCDC180Q9P1Z9 1646 aa23.08■■□□□ 1.28
LHX1-201ENST00000614239 MYT1Q01538 1121 aa22.94■■□□□ 1.26
LHX1-201ENST00000614239 SCAF1Q9H7N4 1312 aaKnown RBP22.9■■□□□ 1.26
LHX1-201ENST00000614239 ZCCHC6Q5VYS8 1495 aaKnown RBP22.61■■□□□ 1.21
LHX1-201ENST00000614239 EHMT2Q96KQ7 1210 aa22.28■■□□□ 1.16
LHX1-201ENST00000614239 GTF3C3Q9Y5Q9 886 aa22.27■■□□□ 1.15
LHX1-201ENST00000614239 CHIC1Q5VXU3 224 aa22.2■■□□□ 1.14
LHX1-201ENST00000614239 NEUROD1Q13562 356 aa22.15■■□□□ 1.14
LHX1-201ENST00000614239 ACIN1Q9UKV3 1341 aaKnown RBP22.12■■□□□ 1.13
LHX1-201ENST00000614239 LOC105371045A0A1W2PR82 267 aa22.09■■□□□ 1.13
LHX1-201ENST00000614239 MYO15BQ96JP2 1530 aa22.08■■□□□ 1.13
LHX1-201ENST00000614239 DCAF1Q9Y4B6 1507 aa22.04■■□□□ 1.12
LHX1-201ENST00000614239 TRIM26Q12899 539 aaPredicted RBP22.04■■□□□ 1.12
LHX1-201ENST00000614239 CENPBP07199 599 aaPredicted RBP22.02■■□□□ 1.11
LHX1-201ENST00000614239 ZEB1P37275 1124 aaPredicted RBP21.99■■□□□ 1.11
LHX1-201ENST00000614239 FAM9AQ8IZU1 332 aaPredicted RBP21.96■■□□□ 1.11
LHX1-201ENST00000614239 YTHDC1Q96MU7 727 aaKnown RBP21.93■■□□□ 1.1
LHX1-201ENST00000614239 ABCC9O60706 1549 aa21.84■■□□□ 1.09
LHX1-201ENST00000614239 BCL11AQ9H165 835 aa21.76■■□□□ 1.07
LHX1-201ENST00000614239 DIEXFQ68CQ4 756 aaKnown RBP21.61■■□□□ 1.05
LHX1-201ENST00000614239 SCRIBQ14160 1630 aa21.54■■□□□ 1.04
LHX1-201ENST00000614239 CCER1Q8TC90 406 aaPredicted RBP21.54■■□□□ 1.04
LHX1-201ENST00000614239 TRIM41Q8WV44 630 aa21.52■■□□□ 1.04
LHX1-201ENST00000614239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.5■■□□□ 1.03
LHX1-201ENST00000614239 TTBK1Q5TCY1 1321 aaPredicted RBP21.48■■□□□ 1.03
LHX1-201ENST00000614239 NACADO15069 1562 aa21.47■■□□□ 1.03
LHX1-201ENST00000614239 PRKCSHP14314 528 aaPredicted RBP21.26■□□□□ 0.99
LHX1-201ENST00000614239 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
LHX1-201ENST00000614239 ANP32EQ9BTT0 268 aa21.22■□□□□ 0.99
LHX1-201ENST00000614239 CSRNP3Q8WYN3 585 aa21.17■□□□□ 0.98
LHX1-201ENST00000614239 RSF1Q96T23 1441 aaPredicted RBP21.05■□□□□ 0.96
LHX1-201ENST00000614239 CECR2Q9BXF3 1484 aa21■□□□□ 0.95
LHX1-201ENST00000614239 BCANQ96GW7 911 aa20.96■□□□□ 0.95
LHX1-201ENST00000614239 MIER1Q8N108 512 aa20.94■□□□□ 0.94
LHX1-201ENST00000614239 RANGAP1P46060 587 aaPredicted RBP20.94■□□□□ 0.94
LHX1-201ENST00000614239 UNC13AQ9UPW8 1703 aa20.92■□□□□ 0.94
LHX1-201ENST00000614239 MROH2BQ7Z745 1585 aa20.86■□□□□ 0.93
LHX1-201ENST00000614239 ZNF316A6NFI3 1004 aaPredicted RBP20.85■□□□□ 0.93
LHX1-201ENST00000614239 TSHZ2Q9NRE2 1034 aa20.82■□□□□ 0.92
LHX1-201ENST00000614239 PABPN1Q86U42 306 aaKnown RBP eCLIP20.79■□□□□ 0.92
LHX1-201ENST00000614239 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
LHX1-201ENST00000614239 ERICH6Q7L0X2 663 aa20.76■□□□□ 0.91
LHX1-201ENST00000614239 UBTFP17480 764 aaKnown RBP20.73■□□□□ 0.91
LHX1-201ENST00000614239 WIZO95785 1651 aa20.72■□□□□ 0.91
LHX1-201ENST00000614239 BICRAQ9NZM4 1560 aa20.7■□□□□ 0.9
LHX1-201ENST00000614239 BAZ1AQ9NRL2 1556 aaPredicted RBP20.65■□□□□ 0.9
LHX1-201ENST00000614239 SMARCA4P51532 1647 aa20.56■□□□□ 0.88
LHX1-201ENST00000614239 ANO8Q9HCE9 1232 aaPredicted RBP20.49■□□□□ 0.87
LHX1-201ENST00000614239 ITGAEP38570 1179 aa20.47■□□□□ 0.87
LHX1-201ENST00000614239 HNRNPUL2Q1KMD3 747 aaKnown RBP20.46■□□□□ 0.87
LHX1-201ENST00000614239 FKBP8Q14318 412 aa20.44■□□□□ 0.86
LHX1-201ENST00000614239 CCDC136Q96JN2 1154 aa20.4■□□□□ 0.86
LHX1-201ENST00000614239 RBM19Q9Y4C8 960 aaKnown RBP20.39■□□□□ 0.85
LHX1-201ENST00000614239 TOP2AP11388 1531 aaKnown RBP20.37■□□□□ 0.85
LHX1-201ENST00000614239 NEFLP07196 543 aa20.37■□□□□ 0.85
LHX1-201ENST00000614239 CCDC88BA6NC98 1476 aa20.29■□□□□ 0.84
LHX1-201ENST00000614239 ABCC8Q09428 1581 aa20.27■□□□□ 0.84
LHX1-201ENST00000614239 APLP2Q06481 763 aa20.27■□□□□ 0.83
LHX1-201ENST00000614239 SMARCA2P51531 1590 aa20.26■□□□□ 0.83
LHX1-201ENST00000614239 RTN4Q9NQC3 1192 aaKnown RBP20.25■□□□□ 0.83
LHX1-201ENST00000614239 CLSPNQ9HAW4 1339 aa20.24■□□□□ 0.83
LHX1-201ENST00000614239 NBR1Q14596 966 aa20.23■□□□□ 0.83
LHX1-201ENST00000614239 DEKP35659 375 aaKnown RBP20.23■□□□□ 0.83
LHX1-201ENST00000614239 SOGA1O94964 1423 aa20.22■□□□□ 0.83
LHX1-201ENST00000614239 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.21■□□□□ 0.83
LHX1-201ENST00000614239 PEG3Q9GZU2 1588 aa20.2■□□□□ 0.82
LHX1-201ENST00000614239 EIF4G1Q04637 1599 aaKnown RBP20.2■□□□□ 0.82
LHX1-201ENST00000614239 SALL2Q9Y467 1007 aaPredicted RBP20.18■□□□□ 0.82
LHX1-201ENST00000614239 ATAD2BQ9ULI0 1458 aa20.18■□□□□ 0.82
LHX1-201ENST00000614239 MSH5O43196 834 aa20.12■□□□□ 0.81
LHX1-201ENST00000614239 RUSC2Q8N2Y8 1516 aa20.1■□□□□ 0.81
LHX1-201ENST00000614239 KCNH8Q96L42 1107 aa20.09■□□□□ 0.81
LHX1-201ENST00000614239 EIF5BO60841 1220 aaKnown RBP20.08■□□□□ 0.81
LHX1-201ENST00000614239 BAZ1BQ9UIG0 1483 aaKnown RBP20.07■□□□□ 0.8
LHX1-201ENST00000614239 CEP162Q5TB80 1403 aa20.06■□□□□ 0.8
LHX1-201ENST00000614239 IRX6P78412 446 aaPredicted RBP20.03■□□□□ 0.8
LHX1-201ENST00000614239 TRIM52Q96A61 297 aa20.02■□□□□ 0.79
LHX1-201ENST00000614239 ATP1B4Q9UN42 357 aaPredicted RBP20.01■□□□□ 0.79
LHX1-201ENST00000614239 CDK11AQ9UQ88 783 aaPredicted RBP19.98■□□□□ 0.79
LHX1-201ENST00000614239 RTL5Q5HYW3 569 aaPredicted RBP19.92■□□□□ 0.78
LHX1-201ENST00000614239 NCAPD3P42695 1498 aa19.88■□□□□ 0.77
LHX1-201ENST00000614239 IL27Q8NEV9 243 aa19.84■□□□□ 0.77
LHX1-201ENST00000614239 WRNQ14191 1432 aaPredicted RBP eCLIP19.82■□□□□ 0.76
LHX1-201ENST00000614239 HMGXB3Q12766 1538 aa19.82■□□□□ 0.76
LHX1-201ENST00000614239 TNIKQ9UKE5 1360 aa19.81■□□□□ 0.76
LHX1-201ENST00000614239 MYT1LQ9UL68 1186 aa19.81■□□□□ 0.76
LHX1-201ENST00000614239 DDX10Q13206 875 aaKnown RBP19.76■□□□□ 0.75
LHX1-201ENST00000614239 P3H3Q8IVL6 736 aa19.76■□□□□ 0.75
LHX1-201ENST00000614239 CLIP1P30622 1438 aa19.74■□□□□ 0.75
LHX1-201ENST00000614239 SYNJ1O43426 1573 aa19.71■□□□□ 0.75
LHX1-201ENST00000614239 GOLGA3Q08378 1498 aa19.69■□□□□ 0.74
LHX1-201ENST00000614239 CC2D2AQ9P2K1 1620 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms