RNA–Protein interactions for RNA: ENST00000613547.4

MDC1-209, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 5 BASIC

Gene MDC1, Length 830 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-209ENST00000613547 NISCHQ9Y2I1 1504 aa31.65■■■□□ 2.66
MDC1-209ENST00000613547 CCDC180Q9P1Z9 1646 aa28.03■■■□□ 2.08
MDC1-209ENST00000613547 ABCC9O60706 1549 aa27.25■■□□□ 1.95
MDC1-209ENST00000613547 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
MDC1-209ENST00000613547 ZCCHC6Q5VYS8 1495 aaKnown RBP26.42■■□□□ 1.82
MDC1-209ENST00000613547 NACADO15069 1562 aa26.33■■□□□ 1.81
MDC1-209ENST00000613547 RB1CC1Q8TDY2 1594 aa26.33■■□□□ 1.8
MDC1-209ENST00000613547 MYO15BQ96JP2 1530 aa26.26■■□□□ 1.79
MDC1-209ENST00000613547 DCAF1Q9Y4B6 1507 aa26.22■■□□□ 1.79
MDC1-209ENST00000613547 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
MDC1-209ENST00000613547 UNC13AQ9UPW8 1703 aa25.56■■□□□ 1.68
MDC1-209ENST00000613547 PABPN1Q86U42 306 aaKnown RBP eCLIP25.5■■□□□ 1.67
MDC1-209ENST00000613547 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
MDC1-209ENST00000613547 SHROOM4Q9ULL8 1493 aa25.31■■□□□ 1.64
MDC1-209ENST00000613547 EIF4G1Q04637 1599 aaKnown RBP24.8■■□□□ 1.56
MDC1-209ENST00000613547 DNAJC5BQ9UF47 199 aa24.74■■□□□ 1.55
MDC1-209ENST00000613547 CC2D2AQ9P2K1 1620 aa24.62■■□□□ 1.53
MDC1-209ENST00000613547 CECR2Q9BXF3 1484 aa24.61■■□□□ 1.53
MDC1-209ENST00000613547 BAZ1AQ9NRL2 1556 aaPredicted RBP24.55■■□□□ 1.52
MDC1-209ENST00000613547 SMARCA4P51532 1647 aa24.5■■□□□ 1.51
MDC1-209ENST00000613547 MROH2BQ7Z745 1585 aa24.38■■□□□ 1.49
MDC1-209ENST00000613547 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
MDC1-209ENST00000613547 ATAD2BQ9ULI0 1458 aa24.33■■□□□ 1.49
MDC1-209ENST00000613547 NCAPD3P42695 1498 aa24.3■■□□□ 1.48
MDC1-209ENST00000613547 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
MDC1-209ENST00000613547 HMGXB3Q12766 1538 aa24.2■■□□□ 1.47
MDC1-209ENST00000613547 RSF1Q96T23 1441 aaPredicted RBP24.2■■□□□ 1.46
MDC1-209ENST00000613547 BAZ1BQ9UIG0 1483 aaKnown RBP24.18■■□□□ 1.46
MDC1-209ENST00000613547 WIZO95785 1651 aa24.1■■□□□ 1.45
MDC1-209ENST00000613547 TOP2AP11388 1531 aaKnown RBP23.92■■□□□ 1.42
MDC1-209ENST00000613547 SUPT5HO00267 1087 aaKnown RBP23.81■■□□□ 1.4
MDC1-209ENST00000613547 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
MDC1-209ENST00000613547 LAMC3Q9Y6N6 1575 aa23.62■■□□□ 1.37
MDC1-209ENST00000613547 CADPSQ9ULU8 1353 aa23.62■■□□□ 1.37
MDC1-209ENST00000613547 NESP48681 1621 aa23.6■■□□□ 1.37
MDC1-209ENST00000613547 ERCC6Q03468 1493 aa23.53■■□□□ 1.36
MDC1-209ENST00000613547 CFTRP13569 1480 aa23.51■■□□□ 1.35
MDC1-209ENST00000613547 PDS5BQ9NTI5 1447 aa23.5■■□□□ 1.35
MDC1-209ENST00000613547 FANCD2Q9BXW9 1451 aa23.35■■□□□ 1.33
MDC1-209ENST00000613547 CEP164Q9UPV0 1460 aa23.31■■□□□ 1.32
MDC1-209ENST00000613547 KIF21AQ7Z4S6 1674 aa23.29■■□□□ 1.32
MDC1-209ENST00000613547 PRDM2Q13029 1718 aa23.25■■□□□ 1.31
MDC1-209ENST00000613547 MRC2Q9UBG0 1479 aa23.23■■□□□ 1.31
MDC1-209ENST00000613547 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
MDC1-209ENST00000613547 CUX2O14529 1486 aa23.17■■□□□ 1.3
MDC1-209ENST00000613547 WDR62O43379 1518 aa23.11■■□□□ 1.29
MDC1-209ENST00000613547 URB2Q14146 1524 aaKnown RBP23.06■■□□□ 1.28
MDC1-209ENST00000613547 ABCC8Q09428 1581 aa23.04■■□□□ 1.28
MDC1-209ENST00000613547 TOPBP1Q92547 1522 aa22.98■■□□□ 1.27
MDC1-209ENST00000613547 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
MDC1-209ENST00000613547 WRNQ14191 1432 aaPredicted RBP eCLIP22.86■■□□□ 1.25
MDC1-209ENST00000613547 CUX1P39880 1505 aa22.86■■□□□ 1.25
MDC1-209ENST00000613547 IFT140Q96RY7 1462 aa22.81■■□□□ 1.24
MDC1-209ENST00000613547 POLA1P09884 1462 aaPredicted RBP22.8■■□□□ 1.24
MDC1-209ENST00000613547 FGD5Q6ZNL6 1462 aa22.78■■□□□ 1.24
MDC1-209ENST00000613547 SOGA1O94964 1423 aa22.74■■□□□ 1.23
MDC1-209ENST00000613547 TOP2BQ02880 1626 aa22.74■■□□□ 1.23
MDC1-209ENST00000613547 SYNJ1O43426 1573 aa22.72■■□□□ 1.23
MDC1-209ENST00000613547 BIVM-ERCC5R4GMW8 1640 aa22.71■■□□□ 1.23
MDC1-209ENST00000613547 TARBP1Q13395 1621 aaKnown RBP22.68■■□□□ 1.22
MDC1-209ENST00000613547 RAD54L2Q9Y4B4 1467 aa22.67■■□□□ 1.22
MDC1-209ENST00000613547 ZNF608Q9ULD9 1512 aaPredicted RBP22.63■■□□□ 1.21
MDC1-209ENST00000613547 ABCA10Q8WWZ4 1543 aa22.57■■□□□ 1.2
MDC1-209ENST00000613547 TDRD9Q8NDG6 1382 aaKnown RBP22.57■■□□□ 1.2
MDC1-209ENST00000613547 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
MDC1-209ENST00000613547 EIF4G3O43432 1585 aaKnown RBP22.56■■□□□ 1.2
MDC1-209ENST00000613547 AQRO60306 1485 aaKnown RBP eCLIP22.56■■□□□ 1.26e-7■■□□□ 11.9
MDC1-209ENST00000613547 TRIM41Q8WV44 630 aa22.5■■□□□ 1.19
MDC1-209ENST00000613547 GAPVD1Q14C86 1478 aa22.47■■□□□ 1.19
MDC1-209ENST00000613547 GRIN2BQ13224 1484 aa22.46■■□□□ 1.19
MDC1-209ENST00000613547 ABCA5Q8WWZ7 1642 aa22.43■■□□□ 1.18
MDC1-209ENST00000613547 KIF27Q86VH2 1401 aa22.38■■□□□ 1.17
MDC1-209ENST00000613547 MAGI1Q96QZ7 1491 aaPredicted RBP22.37■■□□□ 1.17
MDC1-209ENST00000613547 SNAPC4Q5SXM2 1469 aa22.36■■□□□ 1.17
MDC1-209ENST00000613547 PBRM1Q86U86 1689 aa22.33■■□□□ 1.17
MDC1-209ENST00000613547 ERICH3Q5RHP9 1530 aa22.31■■□□□ 1.16
MDC1-209ENST00000613547 FBLN2P98095 1184 aa22.31■■□□□ 1.16
MDC1-209ENST00000613547 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
MDC1-209ENST00000613547 CHMP7Q8WUX9 453 aaPredicted RBP22.29■■□□□ 1.16
MDC1-209ENST00000613547 SYNJ2O15056 1496 aa22.28■■□□□ 1.16
MDC1-209ENST00000613547 OSCARQ8IYS5 282 aa22.27■■□□□ 1.16
MDC1-209ENST00000613547 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
MDC1-209ENST00000613547 IGF1RP08069 1367 aa22.22■■□□□ 1.15
MDC1-209ENST00000613547 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
MDC1-209ENST00000613547 CHD1O14646 1710 aa22.18■■□□□ 1.14
MDC1-209ENST00000613547 DNAJC5Q9H3Z4 198 aa22.18■■□□□ 1.14
MDC1-209ENST00000613547 CUL7Q14999 1698 aa22.15■■□□□ 1.14
MDC1-209ENST00000613547 RUSC2Q8N2Y8 1516 aa22.15■■□□□ 1.14
MDC1-209ENST00000613547 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
MDC1-209ENST00000613547 EEA1Q15075 1411 aa22.12■■□□□ 1.13
MDC1-209ENST00000613547 CARMIL1Q5VZK9 1371 aa22.11■■□□□ 1.13
MDC1-209ENST00000613547 CSRNP3Q8WYN3 585 aa22.03■■□□□ 1.12
MDC1-209ENST00000613547 NUP160Q12769 1436 aa22.03■■□□□ 1.12
MDC1-209ENST00000613547 RAPGEF2Q9Y4G8 1499 aa22.01■■□□□ 1.11
MDC1-209ENST00000613547 FAM9AQ8IZU1 332 aaPredicted RBP22■■□□□ 1.11
MDC1-209ENST00000613547 CLASP1Q7Z460 1538 aa22■■□□□ 1.11
MDC1-209ENST00000613547 CEP170Q5SW79 1584 aa21.99■■□□□ 1.11
MDC1-209ENST00000613547 PRXQ9BXM0 1461 aa21.96■■□□□ 1.11
MDC1-209ENST00000613547 KIAA0586Q9BVV6 1533 aa21.9■■□□□ 1.1
MDC1-209ENST00000613547 ARHGEF11O15085 1522 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms