RNA–Protein interactions for RNA: ENST00000612303.1

NEAT1-204, nuclear paraspeckle assembly transcript 1, humanhuman

TSL 3 BASIC

Gene NEAT1, Length 572 nt, Biotype lincRNA, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEAT1-204ENST00000612303 NISCHQ9Y2I1 1504 aa30.73■■■□□ 2.51
NEAT1-204ENST00000612303 CCDC180Q9P1Z9 1646 aa26.97■■□□□ 1.91
NEAT1-204ENST00000612303 ZCCHC6Q5VYS8 1495 aaKnown RBP25.75■■□□□ 1.71
NEAT1-204ENST00000612303 ABCC9O60706 1549 aa25.56■■□□□ 1.68
NEAT1-204ENST00000612303 DCAF1Q9Y4B6 1507 aa25.5■■□□□ 1.67
NEAT1-204ENST00000612303 DCAF8L2P0C7V8 631 aa25.33■■□□□ 1.65
NEAT1-204ENST00000612303 MYO15BQ96JP2 1530 aa25.32■■□□□ 1.64
NEAT1-204ENST00000612303 NACADO15069 1562 aa25.17■■□□□ 1.62
NEAT1-204ENST00000612303 RB1CC1Q8TDY2 1594 aa24.98■■□□□ 1.59
NEAT1-204ENST00000612303 SHROOM4Q9ULL8 1493 aa24.72■■□□□ 1.55
NEAT1-204ENST00000612303 SCRIBQ14160 1630 aa24.61■■□□□ 1.53
NEAT1-204ENST00000612303 UNC13AQ9UPW8 1703 aa24.42■■□□□ 1.5
NEAT1-204ENST00000612303 BICRAQ9NZM4 1560 aa24.18■■□□□ 1.46
NEAT1-204ENST00000612303 PABPN1Q86U42 306 aaKnown RBP eCLIP24.03■■□□□ 1.44
NEAT1-204ENST00000612303 CECR2Q9BXF3 1484 aa23.82■■□□□ 1.4
NEAT1-204ENST00000612303 BAZ1AQ9NRL2 1556 aaPredicted RBP23.76■■□□□ 1.39
NEAT1-204ENST00000612303 SUPT5HO00267 1087 aaKnown RBP23.72■■□□□ 1.39
NEAT1-204ENST00000612303 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
NEAT1-204ENST00000612303 MROH2BQ7Z745 1585 aa23.68■■□□□ 1.38
NEAT1-204ENST00000612303 SMARCA4P51532 1647 aa23.66■■□□□ 1.38
NEAT1-204ENST00000612303 EIF4G1Q04637 1599 aaKnown RBP23.47■■□□□ 1.35
NEAT1-204ENST00000612303 WIZO95785 1651 aa23.46■■□□□ 1.35
NEAT1-204ENST00000612303 PEG3Q9GZU2 1588 aa23.44■■□□□ 1.34
NEAT1-204ENST00000612303 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
NEAT1-204ENST00000612303 ATAD2BQ9ULI0 1458 aa23.34■■□□□ 1.33
NEAT1-204ENST00000612303 TOP2AP11388 1531 aaKnown RBP23.27■■□□□ 1.32
NEAT1-204ENST00000612303 NCAPD3P42695 1498 aa23.22■■□□□ 1.31
NEAT1-204ENST00000612303 BAZ1BQ9UIG0 1483 aaKnown RBP23.17■■□□□ 1.3
NEAT1-204ENST00000612303 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
NEAT1-204ENST00000612303 HMGXB3Q12766 1538 aa23.16■■□□□ 1.3
NEAT1-204ENST00000612303 CCDC88BA6NC98 1476 aa23.01■■□□□ 1.27
NEAT1-204ENST00000612303 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
NEAT1-204ENST00000612303 CHIC1Q5VXU3 224 aa22.66■■□□□ 1.22
NEAT1-204ENST00000612303 CFTRP13569 1480 aa22.61■■□□□ 1.21
NEAT1-204ENST00000612303 CADPSQ9ULU8 1353 aa22.59■■□□□ 1.21
NEAT1-204ENST00000612303 PRDM2Q13029 1718 aa22.51■■□□□ 1.19
NEAT1-204ENST00000612303 LAMC3Q9Y6N6 1575 aa22.46■■□□□ 1.19
NEAT1-204ENST00000612303 TRIM41Q8WV44 630 aa22.41■■□□□ 1.18
NEAT1-204ENST00000612303 ABCC8Q09428 1581 aa22.37■■□□□ 1.17
NEAT1-204ENST00000612303 NESP48681 1621 aa22.35■■□□□ 1.17
NEAT1-204ENST00000612303 WRNQ14191 1432 aaPredicted RBP eCLIP22.34■■□□□ 1.17
NEAT1-204ENST00000612303 PDS5BQ9NTI5 1447 aa22.3■■□□□ 1.16
NEAT1-204ENST00000612303 FANCD2Q9BXW9 1451 aa22.29■■□□□ 1.16
NEAT1-204ENST00000612303 SYNJ1O43426 1573 aa22.21■■□□□ 1.15
NEAT1-204ENST00000612303 TOP2BQ02880 1626 aa22.2■■□□□ 1.15
NEAT1-204ENST00000612303 BIVM-ERCC5R4GMW8 1640 aa22.2■■□□□ 1.14
NEAT1-204ENST00000612303 CEP164Q9UPV0 1460 aa22.19■■□□□ 1.14
NEAT1-204ENST00000612303 CUX1P39880 1505 aa22.16■■□□□ 1.14
NEAT1-204ENST00000612303 KIF21AQ7Z4S6 1674 aa22.12■■□□□ 1.13
NEAT1-204ENST00000612303 DNMBPQ6XZF7 1577 aa22.08■■□□□ 1.13
NEAT1-204ENST00000612303 TOPBP1Q92547 1522 aa22.04■■□□□ 1.12
NEAT1-204ENST00000612303 URB2Q14146 1524 aaKnown RBP22.01■■□□□ 1.11
NEAT1-204ENST00000612303 MRC2Q9UBG0 1479 aa21.99■■□□□ 1.11
NEAT1-204ENST00000612303 EEA1Q15075 1411 aa21.98■■□□□ 1.11
NEAT1-204ENST00000612303 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
NEAT1-204ENST00000612303 FGD5Q6ZNL6 1462 aa21.96■■□□□ 1.11
NEAT1-204ENST00000612303 SOGA1O94964 1423 aa21.93■■□□□ 1.1
NEAT1-204ENST00000612303 POLA1P09884 1462 aaPredicted RBP21.9■■□□□ 1.1
NEAT1-204ENST00000612303 WDR62O43379 1518 aa21.88■■□□□ 1.09
NEAT1-204ENST00000612303 FAM9AQ8IZU1 332 aaPredicted RBP21.87■■□□□ 1.09
NEAT1-204ENST00000612303 THOC2Q8NI27 1593 aaKnown RBP21.84■■□□□ 1.09
NEAT1-204ENST00000612303 RUSC2Q8N2Y8 1516 aa21.84■■□□□ 1.09
NEAT1-204ENST00000612303 CSRNP3Q8WYN3 585 aa21.83■■□□□ 1.09
NEAT1-204ENST00000612303 KIF27Q86VH2 1401 aa21.82■■□□□ 1.08
NEAT1-204ENST00000612303 ABCA10Q8WWZ4 1543 aa21.81■■□□□ 1.08
NEAT1-204ENST00000612303 RAD54L2Q9Y4B4 1467 aa21.78■■□□□ 1.08
NEAT1-204ENST00000612303 CUX2O14529 1486 aa21.77■■□□□ 1.08
NEAT1-204ENST00000612303 WDR97A6NE52 1622 aa21.73■■□□□ 1.07
NEAT1-204ENST00000612303 TARBP1Q13395 1621 aaKnown RBP21.73■■□□□ 1.07
NEAT1-204ENST00000612303 LOC105371045A0A1W2PR82 267 aa21.71■■□□□ 1.07
NEAT1-204ENST00000612303 IFT140Q96RY7 1462 aa21.71■■□□□ 1.07
NEAT1-204ENST00000612303 KIF21BO75037 1637 aa21.66■■□□□ 1.06
NEAT1-204ENST00000612303 IGF1RP08069 1367 aa21.65■■□□□ 1.06
NEAT1-204ENST00000612303 ABCA5Q8WWZ7 1642 aa21.63■■□□□ 1.05
NEAT1-204ENST00000612303 PRXQ9BXM0 1461 aa21.61■■□□□ 1.05
NEAT1-204ENST00000612303 GAPVD1Q14C86 1478 aa21.6■■□□□ 1.05
NEAT1-204ENST00000612303 TDRD9Q8NDG6 1382 aaKnown RBP21.6■■□□□ 1.05
NEAT1-204ENST00000612303 GOLGA3Q08378 1498 aa21.59■■□□□ 1.05
NEAT1-204ENST00000612303 ERICH3Q5RHP9 1530 aa21.57■■□□□ 1.04
NEAT1-204ENST00000612303 CARMIL1Q5VZK9 1371 aa21.53■■□□□ 1.04
NEAT1-204ENST00000612303 CUL7Q14999 1698 aa21.53■■□□□ 1.04
NEAT1-204ENST00000612303 TNIKQ9UKE5 1360 aa21.51■■□□□ 1.03
NEAT1-204ENST00000612303 AQRO60306 1485 aaKnown RBP eCLIP21.51■■□□□ 1.034e-14■□□□□ 8.2
NEAT1-204ENST00000612303 ZNF608Q9ULD9 1512 aaPredicted RBP21.5■■□□□ 1.03
NEAT1-204ENST00000612303 RAPGEF2Q9Y4G8 1499 aa21.5■■□□□ 1.03
NEAT1-204ENST00000612303 GRIN2BQ13224 1484 aa21.49■■□□□ 1.03
NEAT1-204ENST00000612303 PBRM1Q86U86 1689 aa21.48■■□□□ 1.03
NEAT1-204ENST00000612303 UBTFP17480 764 aaKnown RBP21.47■■□□□ 1.03
NEAT1-204ENST00000612303 EHMT2Q96KQ7 1210 aa21.47■■□□□ 1.03
NEAT1-204ENST00000612303 EIF4G3O43432 1585 aaKnown RBP21.45■■□□□ 1.02
NEAT1-204ENST00000612303 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
NEAT1-204ENST00000612303 ADAMTS12P58397 1594 aa21.36■■□□□ 1.01
NEAT1-204ENST00000612303 MAGI1Q96QZ7 1491 aaPredicted RBP21.35■■□□□ 1.01
NEAT1-204ENST00000612303 SNAPC4Q5SXM2 1469 aa21.31■■□□□ 1
NEAT1-204ENST00000612303 CEP162Q5TB80 1403 aa21.3■■□□□ 1
NEAT1-204ENST00000612303 SYNJ2O15056 1496 aa21.24■□□□□ 0.99
NEAT1-204ENST00000612303 CLIP1P30622 1438 aa21.22■□□□□ 0.99
NEAT1-204ENST00000612303 CTTNBP2Q8WZ74 1663 aa21.22■□□□□ 0.99
NEAT1-204ENST00000612303 GRIN2AQ12879 1464 aa21.2■□□□□ 0.98
NEAT1-204ENST00000612303 CHMP7Q8WUX9 453 aaPredicted RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms