RNA–Protein interactions for RNA: ENST00000610470.4

PRKN-208, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene PRKN, Length 531 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-208ENST00000610470 NISCHQ9Y2I1 1504 aa42.97■■■■■ 4.47
PRKN-208ENST00000610470 CCDC180Q9P1Z9 1646 aa38.43■■■■□ 3.74
PRKN-208ENST00000610470 ABCC9O60706 1549 aa38.12■■■■□ 3.69
PRKN-208ENST00000610470 RB1CC1Q8TDY2 1594 aa36.45■■■■□ 3.43
PRKN-208ENST00000610470 NACADO15069 1562 aa36.28■■■■□ 3.4
PRKN-208ENST00000610470 DCAF8L2P0C7V8 631 aa36.16■■■■□ 3.38
PRKN-208ENST00000610470 MYO15BQ96JP2 1530 aa35.9■■■■□ 3.34
PRKN-208ENST00000610470 ZCCHC6Q5VYS8 1495 aaKnown RBP35.68■■■■□ 3.3
PRKN-208ENST00000610470 UNC13AQ9UPW8 1703 aa35.54■■■■□ 3.28
PRKN-208ENST00000610470 DCAF1Q9Y4B6 1507 aa35.54■■■■□ 3.28
PRKN-208ENST00000610470 PABPN1Q86U42 306 aaKnown RBP eCLIP35.54■■■■□ 3.28
PRKN-208ENST00000610470 DNAJC5BQ9UF47 199 aa35.46■■■■□ 3.27
PRKN-208ENST00000610470 BICRAQ9NZM4 1560 aa35.33■■■■□ 3.25
PRKN-208ENST00000610470 SCRIBQ14160 1630 aa35.02■■■■□ 3.2
PRKN-208ENST00000610470 SHROOM4Q9ULL8 1493 aa34.97■■■■□ 3.19
PRKN-208ENST00000610470 EIF4G1Q04637 1599 aaKnown RBP34.47■■■■□ 3.11
PRKN-208ENST00000610470 CC2D2AQ9P2K1 1620 aa34.45■■■■□ 3.11
PRKN-208ENST00000610470 CECR2Q9BXF3 1484 aa34.33■■■■□ 3.09
PRKN-208ENST00000610470 NCAPD3P42695 1498 aa33.49■■■□□ 2.95
PRKN-208ENST00000610470 SMARCA4P51532 1647 aa33.45■■■□□ 2.95
PRKN-208ENST00000610470 ATAD2BQ9ULI0 1458 aa33.42■■■□□ 2.94
PRKN-208ENST00000610470 SMARCA2P51531 1590 aa33.36■■■□□ 2.93
PRKN-208ENST00000610470 BAZ1AQ9NRL2 1556 aaPredicted RBP33.36■■■□□ 2.93
PRKN-208ENST00000610470 HMGXB3Q12766 1538 aa33.27■■■□□ 2.92
PRKN-208ENST00000610470 PEG3Q9GZU2 1588 aa33.13■■■□□ 2.89
PRKN-208ENST00000610470 BAZ1BQ9UIG0 1483 aaKnown RBP33.12■■■□□ 2.89
PRKN-208ENST00000610470 MROH2BQ7Z745 1585 aa33.09■■■□□ 2.89
PRKN-208ENST00000610470 ERCC6Q03468 1493 aa32.93■■■□□ 2.86
PRKN-208ENST00000610470 NESP48681 1621 aa32.81■■■□□ 2.84
PRKN-208ENST00000610470 CUX2O14529 1486 aa32.78■■■□□ 2.84
PRKN-208ENST00000610470 WIZO95785 1651 aa32.69■■■□□ 2.82
PRKN-208ENST00000610470 LAMC3Q9Y6N6 1575 aa32.69■■■□□ 2.82
PRKN-208ENST00000610470 RSF1Q96T23 1441 aaPredicted RBP32.53■■■□□ 2.8
PRKN-208ENST00000610470 PDS5BQ9NTI5 1447 aa32.51■■■□□ 2.8
PRKN-208ENST00000610470 CADPSQ9ULU8 1353 aa32.49■■■□□ 2.79
PRKN-208ENST00000610470 THOC2Q8NI27 1593 aaKnown RBP32.44■■■□□ 2.78
PRKN-208ENST00000610470 DNAJC5Q9H3Z4 198 aa32.4■■■□□ 2.78
PRKN-208ENST00000610470 KIF21AQ7Z4S6 1674 aa32.4■■■□□ 2.78
PRKN-208ENST00000610470 TOP2AP11388 1531 aaKnown RBP32.35■■■□□ 2.77
PRKN-208ENST00000610470 MRC2Q9UBG0 1479 aa32.19■■■□□ 2.74
PRKN-208ENST00000610470 CFTRP13569 1480 aa32.17■■■□□ 2.74
PRKN-208ENST00000610470 CEP164Q9UPV0 1460 aa32.13■■■□□ 2.73
PRKN-208ENST00000610470 FANCD2Q9BXW9 1451 aa32.11■■■□□ 2.73
PRKN-208ENST00000610470 WDR62O43379 1518 aa32.09■■■□□ 2.73
PRKN-208ENST00000610470 CCDC88BA6NC98 1476 aa31.97■■■□□ 2.71
PRKN-208ENST00000610470 PRDM2Q13029 1718 aa31.85■■■□□ 2.69
PRKN-208ENST00000610470 URB2Q14146 1524 aaKnown RBP31.8■■■□□ 2.68
PRKN-208ENST00000610470 ABCC8Q09428 1581 aa31.53■■■□□ 2.64
PRKN-208ENST00000610470 TOPBP1Q92547 1522 aa31.53■■■□□ 2.64
PRKN-208ENST00000610470 IFT140Q96RY7 1462 aa31.49■■■□□ 2.63
PRKN-208ENST00000610470 DNMBPQ6XZF7 1577 aa31.45■■■□□ 2.63
PRKN-208ENST00000610470 ZNF608Q9ULD9 1512 aaPredicted RBP31.35■■■□□ 2.61
PRKN-208ENST00000610470 OSCARQ8IYS5 282 aa31.34■■■□□ 2.61
PRKN-208ENST00000610470 SUPT5HO00267 1087 aaKnown RBP31.33■■■□□ 2.61
PRKN-208ENST00000610470 POLA1P09884 1462 aaPredicted RBP31.22■■■□□ 2.59
PRKN-208ENST00000610470 EIF4G3O43432 1585 aaKnown RBP31.21■■■□□ 2.59
PRKN-208ENST00000610470 TARBP1Q13395 1621 aaKnown RBP31.2■■■□□ 2.59
PRKN-208ENST00000610470 AQRO60306 1485 aaKnown RBP eCLIP31.12■■■□□ 2.57
PRKN-208ENST00000610470 SOGA1O94964 1423 aa31.11■■■□□ 2.57
PRKN-208ENST00000610470 TRIM41Q8WV44 630 aa31.1■■■□□ 2.57
PRKN-208ENST00000610470 RAD54L2Q9Y4B4 1467 aa31.09■■■□□ 2.57
PRKN-208ENST00000610470 CUX1P39880 1505 aa31.08■■■□□ 2.57
PRKN-208ENST00000610470 FGD5Q6ZNL6 1462 aa31.08■■■□□ 2.57
PRKN-208ENST00000610470 TDRD9Q8NDG6 1382 aaKnown RBP30.98■■■□□ 2.55
PRKN-208ENST00000610470 WDR97A6NE52 1622 aa30.98■■■□□ 2.55
PRKN-208ENST00000610470 CHD1O14646 1710 aa30.9■■■□□ 2.54
PRKN-208ENST00000610470 FBLN2P98095 1184 aa30.89■■■□□ 2.54
PRKN-208ENST00000610470 RIMBP3CA6NJZ7 1639 aa30.84■■■□□ 2.53
PRKN-208ENST00000610470 RIMBP3BA6NNM3 1639 aa30.84■■■□□ 2.53
PRKN-208ENST00000610470 RIMBP3Q9UFD9 1639 aa30.84■■■□□ 2.53
PRKN-208ENST00000610470 SNAPC4Q5SXM2 1469 aa30.83■■■□□ 2.53
PRKN-208ENST00000610470 GRIN2BQ13224 1484 aa30.81■■■□□ 2.52
PRKN-208ENST00000610470 ARHGEF11O15085 1522 aa30.8■■■□□ 2.52
PRKN-208ENST00000610470 MAGI1Q96QZ7 1491 aaPredicted RBP30.78■■■□□ 2.52
PRKN-208ENST00000610470 ABCA10Q8WWZ4 1543 aa30.75■■■□□ 2.51
PRKN-208ENST00000610470 GAPVD1Q14C86 1478 aa30.74■■■□□ 2.51
PRKN-208ENST00000610470 CHMP7Q8WUX9 453 aaPredicted RBP30.73■■■□□ 2.51
PRKN-208ENST00000610470 WRNQ14191 1432 aaPredicted RBP eCLIP30.71■■■□□ 2.51
PRKN-208ENST00000610470 TOP2BQ02880 1626 aa30.68■■■□□ 2.5
PRKN-208ENST00000610470 BIVM-ERCC5R4GMW8 1640 aa30.67■■■□□ 2.5
PRKN-208ENST00000610470 SYNJ2O15056 1496 aa30.67■■■□□ 2.5
PRKN-208ENST00000610470 PBRM1Q86U86 1689 aa30.67■■■□□ 2.5
PRKN-208ENST00000610470 ABCA5Q8WWZ7 1642 aa30.65■■■□□ 2.5
PRKN-208ENST00000610470 SYNJ1O43426 1573 aa30.62■■■□□ 2.49
PRKN-208ENST00000610470 CLASP1Q7Z460 1538 aa30.57■■■□□ 2.49
PRKN-208ENST00000610470 CYB5RLQ6IPT4 315 aa30.57■■■□□ 2.48
PRKN-208ENST00000610470 ARAP1Q96P48 1450 aa30.5■■■□□ 2.47
PRKN-208ENST00000610470 ADAMTS12P58397 1594 aa30.41■■■□□ 2.46
PRKN-208ENST00000610470 GRIN2AQ12879 1464 aa30.4■■■□□ 2.46
PRKN-208ENST00000610470 ERICH3Q5RHP9 1530 aa30.38■■■□□ 2.45
PRKN-208ENST00000610470 FHAD1B1AJZ9 1412 aa30.37■■■□□ 2.45
PRKN-208ENST00000610470 NUP160Q12769 1436 aa30.29■■■□□ 2.44
PRKN-208ENST00000610470 CEP170Q5SW79 1584 aa30.24■■■□□ 2.43
PRKN-208ENST00000610470 TRHP20396 242 aaPredicted RBP30.14■■■□□ 2.42
PRKN-208ENST00000610470 KIF27Q86VH2 1401 aa30.13■■■□□ 2.41
PRKN-208ENST00000610470 SHROOM2Q13796 1616 aa30.1■■■□□ 2.41
PRKN-208ENST00000610470 ERCC6L2Q5T890 1561 aa30.08■■■□□ 2.41
PRKN-208ENST00000610470 IGF1RP08069 1367 aa30.05■■■□□ 2.4
PRKN-208ENST00000610470 CUL7Q14999 1698 aa29.99■■■□□ 2.39
PRKN-208ENST00000610470 JPH4Q96JJ6 628 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms