RNA–Protein interactions for RNA: ENST00000609081.1

LMBR1-220, Transcript of limb development membrane protein 1, humanhuman

TSL 3

Gene LMBR1, Length 466 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-220ENST00000609081 NISCHQ9Y2I1 1504 aa37.1■■■■□ 3.53
LMBR1-220ENST00000609081 CCDC180Q9P1Z9 1646 aa33.18■■■□□ 2.9
LMBR1-220ENST00000609081 ABCC9O60706 1549 aa32.55■■■□□ 2.8
LMBR1-220ENST00000609081 RB1CC1Q8TDY2 1594 aa31.33■■■□□ 2.61
LMBR1-220ENST00000609081 NACADO15069 1562 aa31.24■■■□□ 2.59
LMBR1-220ENST00000609081 MYO15BQ96JP2 1530 aa31.03■■■□□ 2.56
LMBR1-220ENST00000609081 DCAF8L2P0C7V8 631 aa30.99■■■□□ 2.55
LMBR1-220ENST00000609081 ZCCHC6Q5VYS8 1495 aaKnown RBP30.85■■■□□ 2.53
LMBR1-220ENST00000609081 DCAF1Q9Y4B6 1507 aa30.77■■■□□ 2.52
LMBR1-220ENST00000609081 UNC13AQ9UPW8 1703 aa30.55■■■□□ 2.48
LMBR1-220ENST00000609081 PABPN1Q86U42 306 aaKnown RBP eCLIP30.32■■■□□ 2.44
LMBR1-220ENST00000609081 BICRAQ9NZM4 1560 aa30.3■■■□□ 2.44
LMBR1-220ENST00000609081 SHROOM4Q9ULL8 1493 aa30.14■■■□□ 2.42
LMBR1-220ENST00000609081 SCRIBQ14160 1630 aa30.11■■■□□ 2.41
LMBR1-220ENST00000609081 DNAJC5BQ9UF47 199 aa30.04■■■□□ 2.4
LMBR1-220ENST00000609081 EIF4G1Q04637 1599 aaKnown RBP29.56■■■□□ 2.32
LMBR1-220ENST00000609081 CC2D2AQ9P2K1 1620 aa29.49■■■□□ 2.31
LMBR1-220ENST00000609081 CECR2Q9BXF3 1484 aa29.33■■■□□ 2.29
LMBR1-220ENST00000609081 SMARCA4P51532 1647 aa28.83■■■□□ 2.21
LMBR1-220ENST00000609081 BAZ1AQ9NRL2 1556 aaPredicted RBP28.81■■■□□ 2.2
LMBR1-220ENST00000609081 NCAPD3P42695 1498 aa28.8■■■□□ 2.2
LMBR1-220ENST00000609081 SMARCA2P51531 1590 aa28.76■■■□□ 2.19
LMBR1-220ENST00000609081 ATAD2BQ9ULI0 1458 aa28.73■■■□□ 2.19
LMBR1-220ENST00000609081 HMGXB3Q12766 1538 aa28.66■■■□□ 2.18
LMBR1-220ENST00000609081 PEG3Q9GZU2 1588 aa28.62■■■□□ 2.17
LMBR1-220ENST00000609081 MROH2BQ7Z745 1585 aa28.53■■■□□ 2.16
LMBR1-220ENST00000609081 BAZ1BQ9UIG0 1483 aaKnown RBP28.5■■■□□ 2.15
LMBR1-220ENST00000609081 WIZO95785 1651 aa28.2■■■□□ 2.11
LMBR1-220ENST00000609081 ERCC6Q03468 1493 aa28.15■■■□□ 2.1
LMBR1-220ENST00000609081 RSF1Q96T23 1441 aaPredicted RBP28.13■■■□□ 2.09
LMBR1-220ENST00000609081 LAMC3Q9Y6N6 1575 aa28.11■■■□□ 2.09
LMBR1-220ENST00000609081 NESP48681 1621 aa28.07■■■□□ 2.08
LMBR1-220ENST00000609081 CUX2O14529 1486 aa28■■■□□ 2.07
LMBR1-220ENST00000609081 TOP2AP11388 1531 aaKnown RBP27.96■■■□□ 2.07
LMBR1-220ENST00000609081 CADPSQ9ULU8 1353 aa27.93■■■□□ 2.06
LMBR1-220ENST00000609081 PDS5BQ9NTI5 1447 aa27.92■■■□□ 2.06
LMBR1-220ENST00000609081 KIF21AQ7Z4S6 1674 aa27.79■■■□□ 2.04
LMBR1-220ENST00000609081 THOC2Q8NI27 1593 aaKnown RBP27.77■■■□□ 2.04
LMBR1-220ENST00000609081 CFTRP13569 1480 aa27.71■■■□□ 2.03
LMBR1-220ENST00000609081 MRC2Q9UBG0 1479 aa27.61■■■□□ 2.01
LMBR1-220ENST00000609081 CEP164Q9UPV0 1460 aa27.61■■■□□ 2.01
LMBR1-220ENST00000609081 FANCD2Q9BXW9 1451 aa27.59■■■□□ 2.01
LMBR1-220ENST00000609081 CCDC88BA6NC98 1476 aa27.58■■■□□ 2.01
LMBR1-220ENST00000609081 WDR62O43379 1518 aa27.54■■■□□ 2
LMBR1-220ENST00000609081 PRDM2Q13029 1718 aa27.54■■■□□ 2
LMBR1-220ENST00000609081 DNAJC5Q9H3Z4 198 aa27.38■■□□□ 1.97
LMBR1-220ENST00000609081 URB2Q14146 1524 aaKnown RBP27.3■■□□□ 1.96
LMBR1-220ENST00000609081 ABCC8Q09428 1581 aa27.21■■□□□ 1.95
LMBR1-220ENST00000609081 SUPT5HO00267 1087 aaKnown RBP27.15■■□□□ 1.94
LMBR1-220ENST00000609081 TOPBP1Q92547 1522 aa27.12■■□□□ 1.93
LMBR1-220ENST00000609081 DNMBPQ6XZF7 1577 aa27.09■■□□□ 1.93
LMBR1-220ENST00000609081 IFT140Q96RY7 1462 aa27.06■■□□□ 1.92
LMBR1-220ENST00000609081 POLA1P09884 1462 aaPredicted RBP26.87■■□□□ 1.89
LMBR1-220ENST00000609081 ZNF608Q9ULD9 1512 aaPredicted RBP26.85■■□□□ 1.89
LMBR1-220ENST00000609081 TARBP1Q13395 1621 aaKnown RBP26.85■■□□□ 1.89
LMBR1-220ENST00000609081 EIF4G3O43432 1585 aaKnown RBP26.8■■□□□ 1.88
LMBR1-220ENST00000609081 CUX1P39880 1505 aa26.79■■□□□ 1.88
LMBR1-220ENST00000609081 SOGA1O94964 1423 aa26.76■■□□□ 1.87
LMBR1-220ENST00000609081 FGD5Q6ZNL6 1462 aa26.75■■□□□ 1.87
LMBR1-220ENST00000609081 OSCARQ8IYS5 282 aa26.75■■□□□ 1.87
LMBR1-220ENST00000609081 WDR97A6NE52 1622 aa26.74■■□□□ 1.87
LMBR1-220ENST00000609081 RAD54L2Q9Y4B4 1467 aa26.68■■□□□ 1.86
LMBR1-220ENST00000609081 AQRO60306 1485 aaKnown RBP eCLIP26.68■■□□□ 1.868e-8■■■□□ 16.7
LMBR1-220ENST00000609081 TDRD9Q8NDG6 1382 aaKnown RBP26.58■■□□□ 1.85
LMBR1-220ENST00000609081 WRNQ14191 1432 aaPredicted RBP eCLIP26.56■■□□□ 1.84
LMBR1-220ENST00000609081 TOP2BQ02880 1626 aa26.55■■□□□ 1.84
LMBR1-220ENST00000609081 BIVM-ERCC5R4GMW8 1640 aa26.55■■□□□ 1.84
LMBR1-220ENST00000609081 ABCA10Q8WWZ4 1543 aa26.53■■□□□ 1.84
LMBR1-220ENST00000609081 GRIN2BQ13224 1484 aa26.51■■□□□ 1.83
LMBR1-220ENST00000609081 CHD1O14646 1710 aa26.5■■□□□ 1.83
LMBR1-220ENST00000609081 MAGI1Q96QZ7 1491 aaPredicted RBP26.49■■□□□ 1.83
LMBR1-220ENST00000609081 SYNJ1O43426 1573 aa26.46■■□□□ 1.83
LMBR1-220ENST00000609081 GAPVD1Q14C86 1478 aa26.45■■□□□ 1.82
LMBR1-220ENST00000609081 SNAPC4Q5SXM2 1469 aa26.45■■□□□ 1.82
LMBR1-220ENST00000609081 ABCA5Q8WWZ7 1642 aa26.43■■□□□ 1.82
LMBR1-220ENST00000609081 PBRM1Q86U86 1689 aa26.41■■□□□ 1.82
LMBR1-220ENST00000609081 FBLN2P98095 1184 aa26.41■■□□□ 1.82
LMBR1-220ENST00000609081 SYNJ2O15056 1496 aa26.36■■□□□ 1.81
LMBR1-220ENST00000609081 CHMP7Q8WUX9 453 aaPredicted RBP26.35■■□□□ 1.81
LMBR1-220ENST00000609081 RIMBP3CA6NJZ7 1639 aa26.32■■□□□ 1.8
LMBR1-220ENST00000609081 RIMBP3BA6NNM3 1639 aa26.32■■□□□ 1.8
LMBR1-220ENST00000609081 RIMBP3Q9UFD9 1639 aa26.32■■□□□ 1.8
LMBR1-220ENST00000609081 ARHGEF11O15085 1522 aa26.29■■□□□ 1.8
LMBR1-220ENST00000609081 TRIM41Q8WV44 630 aa26.28■■□□□ 1.8
LMBR1-220ENST00000609081 ERICH3Q5RHP9 1530 aa26.24■■□□□ 1.79
LMBR1-220ENST00000609081 CLASP1Q7Z460 1538 aa26.23■■□□□ 1.79
LMBR1-220ENST00000609081 ADAMTS12P58397 1594 aa26.19■■□□□ 1.78
LMBR1-220ENST00000609081 FHAD1B1AJZ9 1412 aa26.16■■□□□ 1.78
LMBR1-220ENST00000609081 GRIN2AQ12879 1464 aa26.15■■□□□ 1.78
LMBR1-220ENST00000609081 KIF27Q86VH2 1401 aa26.05■■□□□ 1.76
LMBR1-220ENST00000609081 NUP160Q12769 1436 aa26.05■■□□□ 1.76
LMBR1-220ENST00000609081 ARAP1Q96P48 1450 aa26.04■■□□□ 1.76
LMBR1-220ENST00000609081 CYB5RLQ6IPT4 315 aa26.02■■□□□ 1.76
LMBR1-220ENST00000609081 CEP170Q5SW79 1584 aa25.99■■□□□ 1.75
LMBR1-220ENST00000609081 CUL7Q14999 1698 aa25.96■■□□□ 1.75
LMBR1-220ENST00000609081 IGF1RP08069 1367 aa25.93■■□□□ 1.74
LMBR1-220ENST00000609081 SHROOM2Q13796 1616 aa25.9■■□□□ 1.74
LMBR1-220ENST00000609081 RUSC2Q8N2Y8 1516 aa25.81■■□□□ 1.72
LMBR1-220ENST00000609081 CARMIL1Q5VZK9 1371 aa25.78■■□□□ 1.72
LMBR1-220ENST00000609081 JPH4Q96JJ6 628 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms