RNA–Protein interactions for RNA: ENST00000607316.2

TMEM259-212, Transcript of transmembrane protein 259, humanhuman

TSL 2

Gene TMEM259, Length 477 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM259-212ENST00000607316 NISCHQ9Y2I1 1504 aa33.32■■■□□ 2.92
TMEM259-212ENST00000607316 CCDC180Q9P1Z9 1646 aa29.6■■■□□ 2.33
TMEM259-212ENST00000607316 ABCC9O60706 1549 aa29.1■■■□□ 2.25
TMEM259-212ENST00000607316 DCAF8L2P0C7V8 631 aa27.88■■■□□ 2.05
TMEM259-212ENST00000607316 RB1CC1Q8TDY2 1594 aa27.88■■■□□ 2.05
TMEM259-212ENST00000607316 NACADO15069 1562 aa27.82■■■□□ 2.04
TMEM259-212ENST00000607316 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.04
TMEM259-212ENST00000607316 MYO15BQ96JP2 1530 aa27.6■■■□□ 2.01
TMEM259-212ENST00000607316 DCAF1Q9Y4B6 1507 aa27.5■■□□□ 1.99
TMEM259-212ENST00000607316 UNC13AQ9UPW8 1703 aa27.35■■□□□ 1.97
TMEM259-212ENST00000607316 PABPN1Q86U42 306 aaKnown RBP eCLIP27.19■■□□□ 1.94
TMEM259-212ENST00000607316 BICRAQ9NZM4 1560 aa27.13■■□□□ 1.93
TMEM259-212ENST00000607316 SCRIBQ14160 1630 aa27.12■■□□□ 1.93
TMEM259-212ENST00000607316 DNAJC5BQ9UF47 199 aa26.76■■□□□ 1.87
TMEM259-212ENST00000607316 SHROOM4Q9ULL8 1493 aa26.68■■□□□ 1.86
TMEM259-212ENST00000607316 EIF4G1Q04637 1599 aaKnown RBP26.39■■□□□ 1.82
TMEM259-212ENST00000607316 CC2D2AQ9P2K1 1620 aa26.3■■□□□ 1.8
TMEM259-212ENST00000607316 CECR2Q9BXF3 1484 aa26.11■■□□□ 1.77
TMEM259-212ENST00000607316 SMARCA4P51532 1647 aa25.88■■□□□ 1.73
TMEM259-212ENST00000607316 BAZ1AQ9NRL2 1556 aaPredicted RBP25.8■■□□□ 1.72
TMEM259-212ENST00000607316 ATAD2BQ9ULI0 1458 aa25.74■■□□□ 1.71
TMEM259-212ENST00000607316 MROH2BQ7Z745 1585 aa25.73■■□□□ 1.71
TMEM259-212ENST00000607316 NCAPD3P42695 1498 aa25.68■■□□□ 1.7
TMEM259-212ENST00000607316 SMARCA2P51531 1590 aa25.65■■□□□ 1.7
TMEM259-212ENST00000607316 PEG3Q9GZU2 1588 aa25.59■■□□□ 1.69
TMEM259-212ENST00000607316 HMGXB3Q12766 1538 aa25.57■■□□□ 1.68
TMEM259-212ENST00000607316 BAZ1BQ9UIG0 1483 aaKnown RBP25.52■■□□□ 1.68
TMEM259-212ENST00000607316 WIZO95785 1651 aa25.47■■□□□ 1.67
TMEM259-212ENST00000607316 RSF1Q96T23 1441 aaPredicted RBP25.39■■□□□ 1.66
TMEM259-212ENST00000607316 NESP48681 1621 aa25.2■■□□□ 1.62
TMEM259-212ENST00000607316 TOP2AP11388 1531 aaKnown RBP25.13■■□□□ 1.61
TMEM259-212ENST00000607316 ERCC6Q03468 1493 aa25.02■■□□□ 1.6
TMEM259-212ENST00000607316 LAMC3Q9Y6N6 1575 aa25.01■■□□□ 1.59
TMEM259-212ENST00000607316 CADPSQ9ULU8 1353 aa24.93■■□□□ 1.58
TMEM259-212ENST00000607316 KIF21AQ7Z4S6 1674 aa24.88■■□□□ 1.57
TMEM259-212ENST00000607316 CCDC88BA6NC98 1476 aa24.86■■□□□ 1.57
TMEM259-212ENST00000607316 PDS5BQ9NTI5 1447 aa24.82■■□□□ 1.56
TMEM259-212ENST00000607316 CFTRP13569 1480 aa24.8■■□□□ 1.56
TMEM259-212ENST00000607316 THOC2Q8NI27 1593 aaKnown RBP24.8■■□□□ 1.56
TMEM259-212ENST00000607316 SUPT5HO00267 1087 aaKnown RBP24.75■■□□□ 1.55
TMEM259-212ENST00000607316 CUX2O14529 1486 aa24.72■■□□□ 1.55
TMEM259-212ENST00000607316 FANCD2Q9BXW9 1451 aa24.7■■□□□ 1.54
TMEM259-212ENST00000607316 CEP164Q9UPV0 1460 aa24.65■■□□□ 1.54
TMEM259-212ENST00000607316 MRC2Q9UBG0 1479 aa24.63■■□□□ 1.53
TMEM259-212ENST00000607316 PRDM2Q13029 1718 aa24.61■■□□□ 1.53
TMEM259-212ENST00000607316 WDR62O43379 1518 aa24.56■■□□□ 1.52
TMEM259-212ENST00000607316 URB2Q14146 1524 aaKnown RBP24.49■■□□□ 1.51
TMEM259-212ENST00000607316 TOPBP1Q92547 1522 aa24.3■■□□□ 1.48
TMEM259-212ENST00000607316 DNMBPQ6XZF7 1577 aa24.25■■□□□ 1.47
TMEM259-212ENST00000607316 ABCC8Q09428 1581 aa24.18■■□□□ 1.46
TMEM259-212ENST00000607316 CUX1P39880 1505 aa24.15■■□□□ 1.46
TMEM259-212ENST00000607316 DNAJC5Q9H3Z4 198 aa24.13■■□□□ 1.45
TMEM259-212ENST00000607316 IFT140Q96RY7 1462 aa24.11■■□□□ 1.45
TMEM259-212ENST00000607316 ZNF608Q9ULD9 1512 aaPredicted RBP24.1■■□□□ 1.45
TMEM259-212ENST00000607316 POLA1P09884 1462 aaPredicted RBP24.1■■□□□ 1.45
TMEM259-212ENST00000607316 TARBP1Q13395 1621 aaKnown RBP24.06■■□□□ 1.44
TMEM259-212ENST00000607316 FGD5Q6ZNL6 1462 aa24.05■■□□□ 1.44
TMEM259-212ENST00000607316 RAD54L2Q9Y4B4 1467 aa24.04■■□□□ 1.44
TMEM259-212ENST00000607316 EIF4G3O43432 1585 aaKnown RBP23.99■■□□□ 1.43
TMEM259-212ENST00000607316 SOGA1O94964 1423 aa23.96■■□□□ 1.43
TMEM259-212ENST00000607316 SYNJ1O43426 1573 aa23.94■■□□□ 1.42
TMEM259-212ENST00000607316 AQRO60306 1485 aaKnown RBP eCLIP23.94■■□□□ 1.427e-14■■■■□ 21.4
TMEM259-212ENST00000607316 WRNQ14191 1432 aaPredicted RBP eCLIP23.93■■□□□ 1.423e-7■□□□□ 11.1
TMEM259-212ENST00000607316 BIVM-ERCC5R4GMW8 1640 aa23.89■■□□□ 1.42
TMEM259-212ENST00000607316 TDRD9Q8NDG6 1382 aaKnown RBP23.88■■□□□ 1.41
TMEM259-212ENST00000607316 TOP2BQ02880 1626 aa23.88■■□□□ 1.41
TMEM259-212ENST00000607316 WDR97A6NE52 1622 aa23.86■■□□□ 1.41
TMEM259-212ENST00000607316 ABCA10Q8WWZ4 1543 aa23.76■■□□□ 1.39
TMEM259-212ENST00000607316 ABCA5Q8WWZ7 1642 aa23.72■■□□□ 1.39
TMEM259-212ENST00000607316 SNAPC4Q5SXM2 1469 aa23.71■■□□□ 1.39
TMEM259-212ENST00000607316 CHD1O14646 1710 aa23.7■■□□□ 1.38
TMEM259-212ENST00000607316 PBRM1Q86U86 1689 aa23.7■■□□□ 1.38
TMEM259-212ENST00000607316 GAPVD1Q14C86 1478 aa23.69■■□□□ 1.38
TMEM259-212ENST00000607316 OSCARQ8IYS5 282 aa23.68■■□□□ 1.38
TMEM259-212ENST00000607316 GRIN2BQ13224 1484 aa23.68■■□□□ 1.38
TMEM259-212ENST00000607316 FBLN2P98095 1184 aa23.62■■□□□ 1.37
TMEM259-212ENST00000607316 MAGI1Q96QZ7 1491 aaPredicted RBP23.61■■□□□ 1.37
TMEM259-212ENST00000607316 SYNJ2O15056 1496 aa23.54■■□□□ 1.36
TMEM259-212ENST00000607316 CHMP7Q8WUX9 453 aaPredicted RBP23.51■■□□□ 1.35
TMEM259-212ENST00000607316 ADAMTS12P58397 1594 aa23.5■■□□□ 1.35
TMEM259-212ENST00000607316 ERICH3Q5RHP9 1530 aa23.47■■□□□ 1.35
TMEM259-212ENST00000607316 CLASP1Q7Z460 1538 aa23.42■■□□□ 1.34
TMEM259-212ENST00000607316 RIMBP3CA6NJZ7 1639 aa23.41■■□□□ 1.34
TMEM259-212ENST00000607316 RIMBP3BA6NNM3 1639 aa23.41■■□□□ 1.34
TMEM259-212ENST00000607316 RIMBP3Q9UFD9 1639 aa23.41■■□□□ 1.34
TMEM259-212ENST00000607316 GRIN2AQ12879 1464 aa23.41■■□□□ 1.34
TMEM259-212ENST00000607316 FHAD1B1AJZ9 1412 aa23.4■■□□□ 1.34
TMEM259-212ENST00000607316 KIF27Q86VH2 1401 aa23.39■■□□□ 1.33
TMEM259-212ENST00000607316 ARHGEF11O15085 1522 aa23.38■■□□□ 1.33
TMEM259-212ENST00000607316 CEP170Q5SW79 1584 aa23.33■■□□□ 1.33
TMEM259-212ENST00000607316 IGF1RP08069 1367 aa23.32■■□□□ 1.32
TMEM259-212ENST00000607316 TRIM41Q8WV44 630 aa23.31■■□□□ 1.32
TMEM259-212ENST00000607316 RUSC2Q8N2Y8 1516 aa23.3■■□□□ 1.32
TMEM259-212ENST00000607316 NUP160Q12769 1436 aa23.29■■□□□ 1.32
TMEM259-212ENST00000607316 CUL7Q14999 1698 aa23.25■■□□□ 1.31
TMEM259-212ENST00000607316 ARAP1Q96P48 1450 aa23.22■■□□□ 1.31
TMEM259-212ENST00000607316 CARMIL1Q5VZK9 1371 aa23.18■■□□□ 1.3
TMEM259-212ENST00000607316 ERCC6L2Q5T890 1561 aa23.17■■□□□ 1.3
TMEM259-212ENST00000607316 CYB5RLQ6IPT4 315 aa23.15■■□□□ 1.3
TMEM259-212ENST00000607316 SHROOM2Q13796 1616 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms