RNA–Protein interactions for RNA: ENST00000602492.5

PPFIA3-204, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 4

Gene PPFIA3, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-204ENST00000602492 NISCHQ9Y2I1 1504 aa50.74■■■■■ 5.71
PPFIA3-204ENST00000602492 ABCC9O60706 1549 aa45.66■■■■■ 4.9
PPFIA3-204ENST00000602492 CCDC180Q9P1Z9 1646 aa45.56■■■■■ 4.88
PPFIA3-204ENST00000602492 RB1CC1Q8TDY2 1594 aa43.43■■■■■ 4.54
PPFIA3-204ENST00000602492 NACADO15069 1562 aa43.12■■■■■ 4.49
PPFIA3-204ENST00000602492 DCAF8L2P0C7V8 631 aa42.9■■■■■ 4.46
PPFIA3-204ENST00000602492 DNAJC5BQ9UF47 199 aa42.86■■■■■ 4.45
PPFIA3-204ENST00000602492 PABPN1Q86U42 306 aaKnown RBP eCLIP42.49■■■■■ 4.39
PPFIA3-204ENST00000602492 MYO15BQ96JP2 1530 aa42.49■■■■■ 4.39
PPFIA3-204ENST00000602492 UNC13AQ9UPW8 1703 aa42.37■■■■■ 4.37
PPFIA3-204ENST00000602492 BICRAQ9NZM4 1560 aa42.13■■■■■ 4.33
PPFIA3-204ENST00000602492 ZCCHC6Q5VYS8 1495 aaKnown RBP42.04■■■■■ 4.32
PPFIA3-204ENST00000602492 DCAF1Q9Y4B6 1507 aa41.92■■■■■ 4.3
PPFIA3-204ENST00000602492 SHROOM4Q9ULL8 1493 aa41.61■■■■■ 4.25
PPFIA3-204ENST00000602492 SCRIBQ14160 1630 aa41.51■■■■■ 4.24
PPFIA3-204ENST00000602492 CC2D2AQ9P2K1 1620 aa41.22■■■■■ 4.19
PPFIA3-204ENST00000602492 CECR2Q9BXF3 1484 aa41.15■■■■■ 4.18
PPFIA3-204ENST00000602492 EIF4G1Q04637 1599 aaKnown RBP41.12■■■■■ 4.17
PPFIA3-204ENST00000602492 NCAPD3P42695 1498 aa39.81■■■■□ 3.96
PPFIA3-204ENST00000602492 ATAD2BQ9ULI0 1458 aa39.67■■■■□ 3.94
PPFIA3-204ENST00000602492 SMARCA4P51532 1647 aa39.59■■■■□ 3.93
PPFIA3-204ENST00000602492 SMARCA2P51531 1590 aa39.57■■■■□ 3.92
PPFIA3-204ENST00000602492 HMGXB3Q12766 1538 aa39.5■■■■□ 3.91
PPFIA3-204ENST00000602492 ERCC6Q03468 1493 aa39.45■■■■□ 3.91
PPFIA3-204ENST00000602492 DNAJC5Q9H3Z4 198 aa39.45■■■■□ 3.91
PPFIA3-204ENST00000602492 BAZ1AQ9NRL2 1556 aaPredicted RBP39.41■■■■□ 3.9
PPFIA3-204ENST00000602492 CUX2O14529 1486 aa39.4■■■■□ 3.9
PPFIA3-204ENST00000602492 BAZ1BQ9UIG0 1483 aaKnown RBP39.3■■■■□ 3.88
PPFIA3-204ENST00000602492 PEG3Q9GZU2 1588 aa39.21■■■■□ 3.87
PPFIA3-204ENST00000602492 NESP48681 1621 aa39.18■■■■□ 3.86
PPFIA3-204ENST00000602492 MROH2BQ7Z745 1585 aa39.08■■■■□ 3.85
PPFIA3-204ENST00000602492 LAMC3Q9Y6N6 1575 aa38.91■■■■□ 3.82
PPFIA3-204ENST00000602492 THOC2Q8NI27 1593 aaKnown RBP38.79■■■■□ 3.8
PPFIA3-204ENST00000602492 PDS5BQ9NTI5 1447 aa38.72■■■■□ 3.79
PPFIA3-204ENST00000602492 KIF21AQ7Z4S6 1674 aa38.65■■■■□ 3.78
PPFIA3-204ENST00000602492 CADPSQ9ULU8 1353 aa38.6■■■■□ 3.77
PPFIA3-204ENST00000602492 WIZO95785 1651 aa38.59■■■■□ 3.77
PPFIA3-204ENST00000602492 MRC2Q9UBG0 1479 aa38.38■■■■□ 3.73
PPFIA3-204ENST00000602492 WDR62O43379 1518 aa38.27■■■■□ 3.72
PPFIA3-204ENST00000602492 RSF1Q96T23 1441 aaPredicted RBP38.26■■■■□ 3.72
PPFIA3-204ENST00000602492 CEP164Q9UPV0 1460 aa38.22■■■■□ 3.71
PPFIA3-204ENST00000602492 FANCD2Q9BXW9 1451 aa38.15■■■■□ 3.7
PPFIA3-204ENST00000602492 TOP2AP11388 1531 aaKnown RBP38.14■■■■□ 3.7
PPFIA3-204ENST00000602492 CFTRP13569 1480 aa38.13■■■■□ 3.69
PPFIA3-204ENST00000602492 URB2Q14146 1524 aaKnown RBP37.83■■■■□ 3.65
PPFIA3-204ENST00000602492 TRIM41Q8WV44 630 aa37.71■■■■□ 3.63
PPFIA3-204ENST00000602492 CCDC88BA6NC98 1476 aa37.71■■■■□ 3.63
PPFIA3-204ENST00000602492 PRDM2Q13029 1718 aa37.7■■■■□ 3.63
PPFIA3-204ENST00000602492 OSCARQ8IYS5 282 aa37.59■■■■□ 3.61
PPFIA3-204ENST00000602492 IFT140Q96RY7 1462 aa37.45■■■■□ 3.59
PPFIA3-204ENST00000602492 TOPBP1Q92547 1522 aa37.41■■■■□ 3.58
PPFIA3-204ENST00000602492 ZNF608Q9ULD9 1512 aaPredicted RBP37.37■■■■□ 3.57
PPFIA3-204ENST00000602492 ABCC8Q09428 1581 aa37.35■■■■□ 3.57
PPFIA3-204ENST00000602492 DNMBPQ6XZF7 1577 aa37.28■■■■□ 3.56
PPFIA3-204ENST00000602492 EIF4G3O43432 1585 aaKnown RBP37.17■■■■□ 3.54
PPFIA3-204ENST00000602492 RIMBP3CA6NJZ7 1639 aa37.07■■■■□ 3.53
PPFIA3-204ENST00000602492 RIMBP3BA6NNM3 1639 aa37.07■■■■□ 3.53
PPFIA3-204ENST00000602492 TARBP1Q13395 1621 aaKnown RBP37.07■■■■□ 3.53
PPFIA3-204ENST00000602492 RIMBP3Q9UFD9 1639 aa37.07■■■■□ 3.53
PPFIA3-204ENST00000602492 AQRO60306 1485 aaKnown RBP eCLIP37.04■■■■□ 3.524e-7■■□□□ 12.7
PPFIA3-204ENST00000602492 POLA1P09884 1462 aaPredicted RBP37.03■■■■□ 3.52
PPFIA3-204ENST00000602492 ARHGEF11O15085 1522 aa36.97■■■■□ 3.51
PPFIA3-204ENST00000602492 RAD54L2Q9Y4B4 1467 aa36.89■■■■□ 3.5
PPFIA3-204ENST00000602492 CHD1O14646 1710 aa36.88■■■■□ 3.49
PPFIA3-204ENST00000602492 SOGA1O94964 1423 aa36.87■■■■□ 3.49
PPFIA3-204ENST00000602492 FBLN2P98095 1184 aa36.84■■■■□ 3.49
PPFIA3-204ENST00000602492 TDRD9Q8NDG6 1382 aaKnown RBP36.8■■■■□ 3.48
PPFIA3-204ENST00000602492 FGD5Q6ZNL6 1462 aa36.79■■■■□ 3.48
PPFIA3-204ENST00000602492 CUX1P39880 1505 aa36.74■■■■□ 3.47
PPFIA3-204ENST00000602492 WDR97A6NE52 1622 aa36.72■■■■□ 3.47
PPFIA3-204ENST00000602492 CYB5RLQ6IPT4 315 aa36.72■■■■□ 3.47
PPFIA3-204ENST00000602492 SNAPC4Q5SXM2 1469 aa36.67■■■■□ 3.46
PPFIA3-204ENST00000602492 ARAP1Q96P48 1450 aa36.6■■■■□ 3.45
PPFIA3-204ENST00000602492 MAGI1Q96QZ7 1491 aaPredicted RBP36.58■■■■□ 3.45
PPFIA3-204ENST00000602492 GRIN2BQ13224 1484 aa36.57■■■■□ 3.45
PPFIA3-204ENST00000602492 CHMP7Q8WUX9 453 aaPredicted RBP36.56■■■■□ 3.44
PPFIA3-204ENST00000602492 SUPT5HO00267 1087 aaKnown RBP36.54■■■■□ 3.44
PPFIA3-204ENST00000602492 CLASP1Q7Z460 1538 aa36.49■■■■□ 3.43
PPFIA3-204ENST00000602492 SYNJ1O43426 1573 aa36.48■■■■□ 3.43
PPFIA3-204ENST00000602492 SYNJ2O15056 1496 aa36.45■■■■□ 3.43
PPFIA3-204ENST00000602492 GAPVD1Q14C86 1478 aa36.43■■■■□ 3.42
PPFIA3-204ENST00000602492 ABCA10Q8WWZ4 1543 aa36.38■■■■□ 3.41
PPFIA3-204ENST00000602492 PBRM1Q86U86 1689 aa36.37■■■■□ 3.41
PPFIA3-204ENST00000602492 TRHP20396 242 aaPredicted RBP36.35■■■■□ 3.41
PPFIA3-204ENST00000602492 ABCA5Q8WWZ7 1642 aa36.3■■■■□ 3.4
PPFIA3-204ENST00000602492 WRNQ14191 1432 aaPredicted RBP eCLIP36.24■■■■□ 3.39
PPFIA3-204ENST00000602492 TOP2BQ02880 1626 aa36.12■■■■□ 3.37
PPFIA3-204ENST00000602492 BIVM-ERCC5R4GMW8 1640 aa36.12■■■■□ 3.37
PPFIA3-204ENST00000602492 GRIN2AQ12879 1464 aa36.09■■■■□ 3.37
PPFIA3-204ENST00000602492 ADAMTS12P58397 1594 aa36.05■■■■□ 3.36
PPFIA3-204ENST00000602492 NUP160Q12769 1436 aa35.98■■■■□ 3.35
PPFIA3-204ENST00000602492 FHAD1B1AJZ9 1412 aa35.97■■■■□ 3.35
PPFIA3-204ENST00000602492 CEP170Q5SW79 1584 aa35.94■■■■□ 3.34
PPFIA3-204ENST00000602492 ERICH3Q5RHP9 1530 aa35.92■■■■□ 3.34
PPFIA3-204ENST00000602492 ERCC6L2Q5T890 1561 aa35.89■■■■□ 3.34
PPFIA3-204ENST00000602492 SHROOM2Q13796 1616 aa35.79■■■■□ 3.32
PPFIA3-204ENST00000602492 PRG4Q92954 1404 aaPredicted RBP35.64■■■■□ 3.3
PPFIA3-204ENST00000602492 JPH4Q96JJ6 628 aa35.61■■■■□ 3.29
PPFIA3-204ENST00000602492 RUSC2Q8N2Y8 1516 aa35.53■■■■□ 3.28
PPFIA3-204ENST00000602492 KIF27Q86VH2 1401 aa35.46■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms