RNA–Protein interactions for RNA: ENST00000602319.1

HCG18-242, Transcript of HLA complex group 18, humanhuman

BASIC

Gene HCG18, Length 3,342 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCG18-242ENST00000602319 NISCHQ9Y2I1 1504 aa19.67■□□□□ 0.74
HCG18-242ENST00000602319 ZCCHC6Q5VYS8 1495 aaKnown RBP16.8■□□□□ 0.28
HCG18-242ENST00000602319 HRCP23327 699 aa16.8■□□□□ 0.28
HCG18-242ENST00000602319 CCDC180Q9P1Z9 1646 aa16.73■□□□□ 0.27
HCG18-242ENST00000602319 MYO15BQ96JP2 1530 aa16.71■□□□□ 0.27
HCG18-242ENST00000602319 SHROOM4Q9ULL8 1493 aa16.66■□□□□ 0.26
HCG18-242ENST00000602319 DCAF1Q9Y4B6 1507 aa16.5■□□□□ 0.23
HCG18-242ENST00000602319 CHIC1Q5VXU3 224 aa16.49■□□□□ 0.23
HCG18-242ENST00000602319 SUPT5HO00267 1087 aaKnown RBP16.48■□□□□ 0.23
HCG18-242ENST00000602319 PCGF6Q9BYE7 350 aa16.25■□□□□ 0.19
HCG18-242ENST00000602319 PPARGC1BQ86YN6 1023 aaKnown RBP16.19■□□□□ 0.18
HCG18-242ENST00000602319 PELP1Q8IZL8 1130 aaKnown RBP16.05■□□□□ 0.16
HCG18-242ENST00000602319 TRIM26Q12899 539 aaPredicted RBP16.01■□□□□ 0.15
HCG18-242ENST00000602319 ABCC9O60706 1549 aa16■□□□□ 0.15
HCG18-242ENST00000602319 ZEB1P37275 1124 aaPredicted RBP15.9■□□□□ 0.14
HCG18-242ENST00000602319 LOC105371045A0A1W2PR82 267 aa15.86■□□□□ 0.13
HCG18-242ENST00000602319 SCAF1Q9H7N4 1312 aaKnown RBP15.73■□□□□ 0.11
HCG18-242ENST00000602319 RB1CC1Q8TDY2 1594 aa15.69■□□□□ 0.1
HCG18-242ENST00000602319 RSF1Q96T23 1441 aaPredicted RBP15.66■□□□□ 0.1
HCG18-242ENST00000602319 DCAF8L2P0C7V8 631 aa15.51■□□□□ 0.07
HCG18-242ENST00000602319 EIF4G1Q04637 1599 aaKnown RBP15.5■□□□□ 0.07
HCG18-242ENST00000602319 SCRIBQ14160 1630 aa15.47■□□□□ 0.07
HCG18-242ENST00000602319 MYT1Q01538 1121 aa15.43■□□□□ 0.06
HCG18-242ENST00000602319 ACIN1Q9UKV3 1341 aaKnown RBP15.42■□□□□ 0.06
HCG18-242ENST00000602319 TRIM41Q8WV44 630 aa15.41■□□□□ 0.06
HCG18-242ENST00000602319 WRNQ14191 1432 aaPredicted RBP eCLIP15.33■□□□□ 0.04
HCG18-242ENST00000602319 BAZ1AQ9NRL2 1556 aaPredicted RBP15.31■□□□□ 0.04
HCG18-242ENST00000602319 NEUROD1Q13562 356 aa15.3■□□□□ 0.04
HCG18-242ENST00000602319 MROH2BQ7Z745 1585 aa15.26■□□□□ 0.03
HCG18-242ENST00000602319 WIZO95785 1651 aa15.25■□□□□ 0.03
HCG18-242ENST00000602319 NACADO15069 1562 aa15.21■□□□□ 0.03
HCG18-242ENST00000602319 CECR2Q9BXF3 1484 aa15.19■□□□□ 0.02
HCG18-242ENST00000602319 CENPBP07199 599 aaPredicted RBP15.17■□□□□ 0.02
HCG18-242ENST00000602319 GTF3C3Q9Y5Q9 886 aa15.15■□□□□ 0.02
HCG18-242ENST00000602319 DIEXFQ68CQ4 756 aaKnown RBP15.15■□□□□ 0.02
HCG18-242ENST00000602319 FAM9AQ8IZU1 332 aaPredicted RBP15.14■□□□□ 0.01
HCG18-242ENST00000602319 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.12■□□□□ 0.01
HCG18-242ENST00000602319 CCER1Q8TC90 406 aaPredicted RBP15.1■□□□□ 0.01
HCG18-242ENST00000602319 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
HCG18-242ENST00000602319 CEP162Q5TB80 1403 aa15.05■□□□□ -0
HCG18-242ENST00000602319 TNIKQ9UKE5 1360 aa15.03■□□□□ -0
HCG18-242ENST00000602319 EEA1Q15075 1411 aa15.01□□□□□ -0.01
HCG18-242ENST00000602319 SMARCA2P51531 1590 aa15□□□□□ -0.01
HCG18-242ENST00000602319 CCDC88BA6NC98 1476 aa14.99□□□□□ -0.01
HCG18-242ENST00000602319 ABCC8Q09428 1581 aa14.97□□□□□ -0.01
HCG18-242ENST00000602319 ZNF316A6NFI3 1004 aaPredicted RBP14.97□□□□□ -0.01
HCG18-242ENST00000602319 SMARCA4P51532 1647 aa14.94□□□□□ -0.02
HCG18-242ENST00000602319 KIF21BO75037 1637 aa14.91□□□□□ -0.02
HCG18-242ENST00000602319 GOLGA3Q08378 1498 aa14.88□□□□□ -0.03
HCG18-242ENST00000602319 SOGA1O94964 1423 aa14.86□□□□□ -0.03
HCG18-242ENST00000602319 EHMT2Q96KQ7 1210 aa14.86□□□□□ -0.03
HCG18-242ENST00000602319 CLSPNQ9HAW4 1339 aa14.81□□□□□ -0.04
HCG18-242ENST00000602319 UNC13AQ9UPW8 1703 aa14.81□□□□□ -0.04
HCG18-242ENST00000602319 RUSC2Q8N2Y8 1516 aa14.79□□□□□ -0.04
HCG18-242ENST00000602319 MIER1Q8N108 512 aa14.77□□□□□ -0.04
HCG18-242ENST00000602319 BAZ1BQ9UIG0 1483 aaKnown RBP14.76□□□□□ -0.05
HCG18-242ENST00000602319 PEG3Q9GZU2 1588 aa14.75□□□□□ -0.05
HCG18-242ENST00000602319 CEP164Q9UPV0 1460 aa14.75□□□□□ -0.05
HCG18-242ENST00000602319 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
HCG18-242ENST00000602319 VPS8Q8N3P4 1428 aa14.71□□□□□ -0.05
HCG18-242ENST00000602319 SYNJ1O43426 1573 aa14.69□□□□□ -0.06
HCG18-242ENST00000602319 CLIP1P30622 1438 aa14.66□□□□□ -0.06
HCG18-242ENST00000602319 CUX2O14529 1486 aa14.63□□□□□ -0.07
HCG18-242ENST00000602319 YTHDC1Q96MU7 727 aaKnown RBP14.63□□□□□ -0.07
HCG18-242ENST00000602319 SUPT16HQ9Y5B9 1047 aaKnown RBP14.58□□□□□ -0.08
HCG18-242ENST00000602319 DHX57Q6P158 1386 aaKnown RBP14.58□□□□□ -0.08
HCG18-242ENST00000602319 ERICH3Q5RHP9 1530 aa14.56□□□□□ -0.08
HCG18-242ENST00000602319 BIVM-ERCC5R4GMW8 1640 aa14.56□□□□□ -0.08
HCG18-242ENST00000602319 TTBK1Q5TCY1 1321 aaPredicted RBP14.55□□□□□ -0.08
HCG18-242ENST00000602319 UBTFP17480 764 aaKnown RBP14.53□□□□□ -0.08
HCG18-242ENST00000602319 TOP2BQ02880 1626 aa14.53□□□□□ -0.08
HCG18-242ENST00000602319 RAPGEF2Q9Y4G8 1499 aa14.52□□□□□ -0.08
HCG18-242ENST00000602319 RRBP1Q9P2E9 1410 aaKnown RBP14.52□□□□□ -0.09
HCG18-242ENST00000602319 ARAP1Q96P48 1450 aa14.49□□□□□ -0.09
HCG18-242ENST00000602319 BICRAQ9NZM4 1560 aa14.49□□□□□ -0.09
HCG18-242ENST00000602319 TSHZ2Q9NRE2 1034 aa14.48□□□□□ -0.09
HCG18-242ENST00000602319 HNRNPUL2Q1KMD3 747 aaKnown RBP14.48□□□□□ -0.09
HCG18-242ENST00000602319 ANP32EQ9BTT0 268 aa14.45□□□□□ -0.1
HCG18-242ENST00000602319 AEBP2Q6ZN18 517 aaPredicted RBP14.45□□□□□ -0.1
HCG18-242ENST00000602319 PRXQ9BXM0 1461 aa14.44□□□□□ -0.1
HCG18-242ENST00000602319 MAPKBP1O60336 1514 aa14.39□□□□□ -0.11
HCG18-242ENST00000602319 MAP3K1Q13233 1512 aa14.35□□□□□ -0.11
HCG18-242ENST00000602319 ATAD2BQ9ULI0 1458 aa14.34□□□□□ -0.11
HCG18-242ENST00000602319 APLP2Q06481 763 aa14.29□□□□□ -0.12
HCG18-242ENST00000602319 CCNB3Q8WWL7 1395 aa14.27□□□□□ -0.13
HCG18-242ENST00000602319 CFAP43Q8NDM7 1665 aa14.26□□□□□ -0.13
HCG18-242ENST00000602319 BCL11AQ9H165 835 aa14.25□□□□□ -0.13
HCG18-242ENST00000602319 TIAM1Q13009 1591 aa14.25□□□□□ -0.13
HCG18-242ENST00000602319 ARHGAP35Q9NRY4 1499 aa14.25□□□□□ -0.13
HCG18-242ENST00000602319 PRDM2Q13029 1718 aa14.24□□□□□ -0.13
HCG18-242ENST00000602319 KANK4Q5T7N3 995 aaPredicted RBP14.23□□□□□ -0.13
HCG18-242ENST00000602319 WDR97A6NE52 1622 aa14.23□□□□□ -0.13
HCG18-242ENST00000602319 CUX1P39880 1505 aa14.21□□□□□ -0.13
HCG18-242ENST00000602319 RAB3GAP2Q9H2M9 1393 aa14.18□□□□□ -0.14
HCG18-242ENST00000602319 KCNH8Q96L42 1107 aa14.16□□□□□ -0.14
HCG18-242ENST00000602319 HMGXB3Q12766 1538 aa14.15□□□□□ -0.14
HCG18-242ENST00000602319 PPP1R15AO75807 674 aaPredicted RBP14.15□□□□□ -0.14
HCG18-242ENST00000602319 CCER2I3L3R5 266 aa14.14□□□□□ -0.15
HCG18-242ENST00000602319 SETD5Q9C0A6 1442 aa14.14□□□□□ -0.15
HCG18-242ENST00000602319 TIMELESSQ9UNS1 1208 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms