RNA–Protein interactions for RNA: ENST00000601614.6

SSBP4-211, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 628 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-211ENST00000601614 NISCHQ9Y2I1 1504 aa41.22■■■■■ 4.19
SSBP4-211ENST00000601614 ABCC9O60706 1549 aa37.77■■■■□ 3.64
SSBP4-211ENST00000601614 CCDC180Q9P1Z9 1646 aa37.24■■■■□ 3.55
SSBP4-211ENST00000601614 DNAJC5BQ9UF47 199 aa35.96■■■■□ 3.35
SSBP4-211ENST00000601614 RB1CC1Q8TDY2 1594 aa35.67■■■■□ 3.3
SSBP4-211ENST00000601614 NACADO15069 1562 aa35.29■■■■□ 3.24
SSBP4-211ENST00000601614 PABPN1Q86U42 306 aaKnown RBP eCLIP35.05■■■■□ 3.24e-9■■■□□ 14.9
SSBP4-211ENST00000601614 UNC13AQ9UPW8 1703 aa35.03■■■■□ 3.2
SSBP4-211ENST00000601614 DCAF8L2P0C7V8 631 aa34.94■■■■□ 3.18
SSBP4-211ENST00000601614 BICRAQ9NZM4 1560 aa34.76■■■■□ 3.16
SSBP4-211ENST00000601614 MYO15BQ96JP2 1530 aa34.6■■■■□ 3.13
SSBP4-211ENST00000601614 CC2D2AQ9P2K1 1620 aa34.12■■■■□ 3.05
SSBP4-211ENST00000601614 SHROOM4Q9ULL8 1493 aa34.07■■■■□ 3.05
SSBP4-211ENST00000601614 ZCCHC6Q5VYS8 1495 aaKnown RBP34.06■■■■□ 3.04
SSBP4-211ENST00000601614 CECR2Q9BXF3 1484 aa34.05■■■■□ 3.04
SSBP4-211ENST00000601614 DCAF1Q9Y4B6 1507 aa33.98■■■■□ 3.03
SSBP4-211ENST00000601614 SCRIBQ14160 1630 aa33.93■■■■□ 3.02
SSBP4-211ENST00000601614 EIF4G1Q04637 1599 aaKnown RBP33.89■■■■□ 3.02
SSBP4-211ENST00000601614 DNAJC5Q9H3Z4 198 aa33.31■■■□□ 2.92
SSBP4-211ENST00000601614 CUX2O14529 1486 aa32.71■■■□□ 2.83
SSBP4-211ENST00000601614 NCAPD3P42695 1498 aa32.59■■■□□ 2.81
SSBP4-211ENST00000601614 ERCC6Q03468 1493 aa32.57■■■□□ 2.8
SSBP4-211ENST00000601614 ATAD2BQ9ULI0 1458 aa32.44■■■□□ 2.78
SSBP4-211ENST00000601614 NESP48681 1621 aa32.33■■■□□ 2.77
SSBP4-211ENST00000601614 HMGXB3Q12766 1538 aa32.31■■■□□ 2.76
SSBP4-211ENST00000601614 SMARCA4P51532 1647 aa32.3■■■□□ 2.76
SSBP4-211ENST00000601614 SMARCA2P51531 1590 aa32.28■■■□□ 2.76
SSBP4-211ENST00000601614 THOC2Q8NI27 1593 aaKnown RBP32.13■■■□□ 2.73
SSBP4-211ENST00000601614 BAZ1BQ9UIG0 1483 aaKnown RBP32.06■■■□□ 2.72
SSBP4-211ENST00000601614 BAZ1AQ9NRL2 1556 aaPredicted RBP31.99■■■□□ 2.71
SSBP4-211ENST00000601614 PEG3Q9GZU2 1588 aa31.97■■■□□ 2.71
SSBP4-211ENST00000601614 LAMC3Q9Y6N6 1575 aa31.94■■■□□ 2.7
SSBP4-211ENST00000601614 KIF21AQ7Z4S6 1674 aa31.93■■■□□ 2.7
SSBP4-211ENST00000601614 MROH2BQ7Z745 1585 aa31.8■■■□□ 2.68
SSBP4-211ENST00000601614 PDS5BQ9NTI5 1447 aa31.71■■■□□ 2.67
SSBP4-211ENST00000601614 TRIM41Q8WV44 630 aa31.63■■■□□ 2.65
SSBP4-211ENST00000601614 CADPSQ9ULU8 1353 aa31.56■■■□□ 2.64
SSBP4-211ENST00000601614 MRC2Q9UBG0 1479 aa31.53■■■□□ 2.64
SSBP4-211ENST00000601614 WDR62O43379 1518 aa31.51■■■□□ 2.63
SSBP4-211ENST00000601614 WIZO95785 1651 aa31.42■■■□□ 2.62
SSBP4-211ENST00000601614 CEP164Q9UPV0 1460 aa31.29■■■□□ 2.6
SSBP4-211ENST00000601614 FANCD2Q9BXW9 1451 aa31.22■■■□□ 2.59
SSBP4-211ENST00000601614 CFTRP13569 1480 aa31.11■■■□□ 2.57
SSBP4-211ENST00000601614 OSCARQ8IYS5 282 aa31.08■■■□□ 2.57
SSBP4-211ENST00000601614 URB2Q14146 1524 aaKnown RBP31.05■■■□□ 2.56
SSBP4-211ENST00000601614 TOP2AP11388 1531 aaKnown RBP30.92■■■□□ 2.54
SSBP4-211ENST00000601614 RSF1Q96T23 1441 aaPredicted RBP30.9■■■□□ 2.54
SSBP4-211ENST00000601614 RIMBP3CA6NJZ7 1639 aa30.87■■■□□ 2.53
SSBP4-211ENST00000601614 RIMBP3BA6NNM3 1639 aa30.87■■■□□ 2.53
SSBP4-211ENST00000601614 RIMBP3Q9UFD9 1639 aa30.87■■■□□ 2.53
SSBP4-211ENST00000601614 PRDM2Q13029 1718 aa30.84■■■□□ 2.53
SSBP4-211ENST00000601614 ZNF608Q9ULD9 1512 aaPredicted RBP30.77■■■□□ 2.52
SSBP4-211ENST00000601614 ARHGEF11O15085 1522 aa30.68■■■□□ 2.5
SSBP4-211ENST00000601614 IFT140Q96RY7 1462 aa30.67■■■□□ 2.5
SSBP4-211ENST00000601614 TOPBP1Q92547 1522 aa30.6■■■□□ 2.49
SSBP4-211ENST00000601614 CCDC88BA6NC98 1476 aa30.57■■■□□ 2.48
SSBP4-211ENST00000601614 EIF4G3O43432 1585 aaKnown RBP30.57■■■□□ 2.48
SSBP4-211ENST00000601614 CHD1O14646 1710 aa30.49■■■□□ 2.47
SSBP4-211ENST00000601614 CYB5RLQ6IPT4 315 aa30.44■■■□□ 2.46
SSBP4-211ENST00000601614 DNMBPQ6XZF7 1577 aa30.42■■■□□ 2.46
SSBP4-211ENST00000601614 TARBP1Q13395 1621 aaKnown RBP30.41■■■□□ 2.46
SSBP4-211ENST00000601614 ABCC8Q09428 1581 aa30.39■■■□□ 2.46
SSBP4-211ENST00000601614 AQRO60306 1485 aaKnown RBP eCLIP30.38■■■□□ 2.458e-8■■■■■ 50.9
SSBP4-211ENST00000601614 ARAP1Q96P48 1450 aa30.37■■■□□ 2.45
SSBP4-211ENST00000601614 POLA1P09884 1462 aaPredicted RBP30.25■■■□□ 2.43
SSBP4-211ENST00000601614 TRHP20396 242 aaPredicted RBP30.22■■■□□ 2.43
SSBP4-211ENST00000601614 FBLN2P98095 1184 aa30.21■■■□□ 2.43
SSBP4-211ENST00000601614 RAD54L2Q9Y4B4 1467 aa30.17■■■□□ 2.42
SSBP4-211ENST00000601614 TDRD9Q8NDG6 1382 aaKnown RBP30.09■■■□□ 2.41
SSBP4-211ENST00000601614 CLASP1Q7Z460 1538 aa30.07■■■□□ 2.4
SSBP4-211ENST00000601614 SNAPC4Q5SXM2 1469 aa30.06■■■□□ 2.4
SSBP4-211ENST00000601614 SOGA1O94964 1423 aa30.05■■■□□ 2.4
SSBP4-211ENST00000601614 FGD5Q6ZNL6 1462 aa29.99■■■□□ 2.39
SSBP4-211ENST00000601614 WDR97A6NE52 1622 aa29.96■■■□□ 2.39
SSBP4-211ENST00000601614 SYNJ1O43426 1573 aa29.94■■■□□ 2.38
SSBP4-211ENST00000601614 MAGI1Q96QZ7 1491 aaPredicted RBP29.91■■■□□ 2.38
SSBP4-211ENST00000601614 CUX1P39880 1505 aa29.91■■■□□ 2.38
SSBP4-211ENST00000601614 CHMP7Q8WUX9 453 aaPredicted RBP29.87■■■□□ 2.37
SSBP4-211ENST00000601614 GRIN2BQ13224 1484 aa29.85■■■□□ 2.37
SSBP4-211ENST00000601614 SYNJ2O15056 1496 aa29.82■■■□□ 2.36
SSBP4-211ENST00000601614 PBRM1Q86U86 1689 aa29.81■■■□□ 2.36
SSBP4-211ENST00000601614 GAPVD1Q14C86 1478 aa29.74■■■□□ 2.35
SSBP4-211ENST00000601614 AEBP2Q6ZN18 517 aaPredicted RBP29.7■■■□□ 2.35
SSBP4-211ENST00000601614 ABCA5Q8WWZ7 1642 aa29.66■■■□□ 2.34
SSBP4-211ENST00000601614 ERCC6L2Q5T890 1561 aa29.63■■■□□ 2.33
SSBP4-211ENST00000601614 ABCA10Q8WWZ4 1543 aa29.59■■■□□ 2.33
SSBP4-211ENST00000601614 GRIN2AQ12879 1464 aa29.5■■■□□ 2.31
SSBP4-211ENST00000601614 CEP170Q5SW79 1584 aa29.48■■■□□ 2.31
SSBP4-211ENST00000601614 ADAMTS12P58397 1594 aa29.46■■■□□ 2.31
SSBP4-211ENST00000601614 NUP160Q12769 1436 aa29.43■■■□□ 2.3
SSBP4-211ENST00000601614 SHROOM2Q13796 1616 aa29.41■■■□□ 2.3
SSBP4-211ENST00000601614 KIF13AQ9H1H9 1805 aa29.37■■■□□ 2.29
SSBP4-211ENST00000601614 WRNQ14191 1432 aaPredicted RBP eCLIP29.3■■■□□ 2.28
SSBP4-211ENST00000601614 BIVM-ERCC5R4GMW8 1640 aa29.29■■■□□ 2.28
SSBP4-211ENST00000601614 FHAD1B1AJZ9 1412 aa29.27■■■□□ 2.28
SSBP4-211ENST00000601614 TOP2BQ02880 1626 aa29.25■■■□□ 2.27
SSBP4-211ENST00000601614 ERICH3Q5RHP9 1530 aa29.2■■■□□ 2.26
SSBP4-211ENST00000601614 PRG4Q92954 1404 aaPredicted RBP29.16■■■□□ 2.26
SSBP4-211ENST00000601614 SUPT5HO00267 1087 aaKnown RBP29.08■■■□□ 2.25
SSBP4-211ENST00000601614 JPH4Q96JJ6 628 aa29.07■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms