RNA–Protein interactions for RNA: ENST00000601220.5

CHMP2A-208, Transcript of charged multivesicular body protein 2A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP2A, Length 885 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-208ENST00000601220 NISCHQ9Y2I1 1504 aa45.26■■■■■ 4.84
CHMP2A-208ENST00000601220 ABCC9O60706 1549 aa40.54■■■■■ 4.08
CHMP2A-208ENST00000601220 CCDC180Q9P1Z9 1646 aa40.49■■■■■ 4.07
CHMP2A-208ENST00000601220 RB1CC1Q8TDY2 1594 aa38.55■■■■□ 3.76
CHMP2A-208ENST00000601220 NACADO15069 1562 aa38.33■■■■□ 3.73
CHMP2A-208ENST00000601220 DNAJC5BQ9UF47 199 aa38.16■■■■□ 3.7
CHMP2A-208ENST00000601220 DCAF8L2P0C7V8 631 aa38.13■■■■□ 3.69
CHMP2A-208ENST00000601220 MYO15BQ96JP2 1530 aa37.87■■■■□ 3.65
CHMP2A-208ENST00000601220 PABPN1Q86U42 306 aaKnown RBP eCLIP37.8■■■■□ 3.64
CHMP2A-208ENST00000601220 UNC13AQ9UPW8 1703 aa37.62■■■■□ 3.61
CHMP2A-208ENST00000601220 BICRAQ9NZM4 1560 aa37.51■■■■□ 3.6
CHMP2A-208ENST00000601220 ZCCHC6Q5VYS8 1495 aaKnown RBP37.51■■■■□ 3.59
CHMP2A-208ENST00000601220 DCAF1Q9Y4B6 1507 aa37.39■■■■□ 3.58
CHMP2A-208ENST00000601220 SHROOM4Q9ULL8 1493 aa36.97■■■■□ 3.51
CHMP2A-208ENST00000601220 SCRIBQ14160 1630 aa36.91■■■■□ 3.5
CHMP2A-208ENST00000601220 CC2D2AQ9P2K1 1620 aa36.6■■■■□ 3.45
CHMP2A-208ENST00000601220 EIF4G1Q04637 1599 aaKnown RBP36.54■■■■□ 3.44
CHMP2A-208ENST00000601220 CECR2Q9BXF3 1484 aa36.53■■■■□ 3.44
CHMP2A-208ENST00000601220 NCAPD3P42695 1498 aa35.47■■■■□ 3.27
CHMP2A-208ENST00000601220 ATAD2BQ9ULI0 1458 aa35.35■■■■□ 3.25
CHMP2A-208ENST00000601220 SMARCA4P51532 1647 aa35.24■■■■□ 3.23
CHMP2A-208ENST00000601220 SMARCA2P51531 1590 aa35.17■■■■□ 3.22
CHMP2A-208ENST00000601220 HMGXB3Q12766 1538 aa35.13■■■■□ 3.21
CHMP2A-208ENST00000601220 BAZ1AQ9NRL2 1556 aaPredicted RBP35.07■■■■□ 3.2
CHMP2A-208ENST00000601220 DNAJC5Q9H3Z4 198 aa34.98■■■■□ 3.19
CHMP2A-208ENST00000601220 PEG3Q9GZU2 1588 aa34.96■■■■□ 3.19
CHMP2A-208ENST00000601220 ERCC6Q03468 1493 aa34.94■■■■□ 3.18
CHMP2A-208ENST00000601220 CUX2O14529 1486 aa34.93■■■■□ 3.18
CHMP2A-208ENST00000601220 BAZ1BQ9UIG0 1483 aaKnown RBP34.93■■■■□ 3.18
CHMP2A-208ENST00000601220 MROH2BQ7Z745 1585 aa34.87■■■■□ 3.17
CHMP2A-208ENST00000601220 NESP48681 1621 aa34.86■■■■□ 3.17
CHMP2A-208ENST00000601220 LAMC3Q9Y6N6 1575 aa34.56■■■■□ 3.12
CHMP2A-208ENST00000601220 THOC2Q8NI27 1593 aaKnown RBP34.45■■■■□ 3.11
CHMP2A-208ENST00000601220 WIZO95785 1651 aa34.4■■■■□ 3.1
CHMP2A-208ENST00000601220 PDS5BQ9NTI5 1447 aa34.39■■■■□ 3.1
CHMP2A-208ENST00000601220 CADPSQ9ULU8 1353 aa34.37■■■■□ 3.09
CHMP2A-208ENST00000601220 KIF21AQ7Z4S6 1674 aa34.3■■■■□ 3.08
CHMP2A-208ENST00000601220 RSF1Q96T23 1441 aaPredicted RBP34.2■■■■□ 3.06
CHMP2A-208ENST00000601220 MRC2Q9UBG0 1479 aa34.09■■■■□ 3.05
CHMP2A-208ENST00000601220 WDR62O43379 1518 aa34.02■■■■□ 3.04
CHMP2A-208ENST00000601220 CFTRP13569 1480 aa33.99■■■■□ 3.03
CHMP2A-208ENST00000601220 TOP2AP11388 1531 aaKnown RBP33.98■■■■□ 3.03
CHMP2A-208ENST00000601220 FANCD2Q9BXW9 1451 aa33.94■■■■□ 3.02
CHMP2A-208ENST00000601220 CEP164Q9UPV0 1460 aa33.93■■■■□ 3.02
CHMP2A-208ENST00000601220 URB2Q14146 1524 aaKnown RBP33.69■■■□□ 2.98
CHMP2A-208ENST00000601220 CCDC88BA6NC98 1476 aa33.66■■■□□ 2.98
CHMP2A-208ENST00000601220 PRDM2Q13029 1718 aa33.45■■■□□ 2.94
CHMP2A-208ENST00000601220 OSCARQ8IYS5 282 aa33.38■■■□□ 2.93
CHMP2A-208ENST00000601220 TRIM41Q8WV44 630 aa33.34■■■□□ 2.93
CHMP2A-208ENST00000601220 TOPBP1Q92547 1522 aa33.31■■■□□ 2.92
CHMP2A-208ENST00000601220 IFT140Q96RY7 1462 aa33.3■■■□□ 2.92
CHMP2A-208ENST00000601220 ZNF608Q9ULD9 1512 aaPredicted RBP33.28■■■□□ 2.92
CHMP2A-208ENST00000601220 ABCC8Q09428 1581 aa33.21■■■□□ 2.91
CHMP2A-208ENST00000601220 DNMBPQ6XZF7 1577 aa33.15■■■□□ 2.9
CHMP2A-208ENST00000601220 TARBP1Q13395 1621 aaKnown RBP33■■■□□ 2.87
CHMP2A-208ENST00000601220 EIF4G3O43432 1585 aaKnown RBP33■■■□□ 2.87
CHMP2A-208ENST00000601220 AQRO60306 1485 aaKnown RBP eCLIP32.98■■■□□ 2.876e-6■■□□□ 13.3
CHMP2A-208ENST00000601220 POLA1P09884 1462 aaPredicted RBP32.98■■■□□ 2.87
CHMP2A-208ENST00000601220 RAD54L2Q9Y4B4 1467 aa32.87■■■□□ 2.85
CHMP2A-208ENST00000601220 RIMBP3CA6NJZ7 1639 aa32.87■■■□□ 2.85
CHMP2A-208ENST00000601220 RIMBP3BA6NNM3 1639 aa32.87■■■□□ 2.85
CHMP2A-208ENST00000601220 RIMBP3Q9UFD9 1639 aa32.87■■■□□ 2.85
CHMP2A-208ENST00000601220 SOGA1O94964 1423 aa32.84■■■□□ 2.85
CHMP2A-208ENST00000601220 ARHGEF11O15085 1522 aa32.8■■■□□ 2.84
CHMP2A-208ENST00000601220 TDRD9Q8NDG6 1382 aaKnown RBP32.78■■■□□ 2.84
CHMP2A-208ENST00000601220 FGD5Q6ZNL6 1462 aa32.75■■■□□ 2.83
CHMP2A-208ENST00000601220 CUX1P39880 1505 aa32.75■■■□□ 2.83
CHMP2A-208ENST00000601220 CHD1O14646 1710 aa32.7■■■□□ 2.83
CHMP2A-208ENST00000601220 FBLN2P98095 1184 aa32.69■■■□□ 2.82
CHMP2A-208ENST00000601220 SUPT5HO00267 1087 aaKnown RBP32.63■■■□□ 2.81
CHMP2A-208ENST00000601220 WDR97A6NE52 1622 aa32.62■■■□□ 2.81
CHMP2A-208ENST00000601220 CYB5RLQ6IPT4 315 aa32.59■■■□□ 2.81
CHMP2A-208ENST00000601220 SNAPC4Q5SXM2 1469 aa32.59■■■□□ 2.81
CHMP2A-208ENST00000601220 GRIN2BQ13224 1484 aa32.52■■■□□ 2.8
CHMP2A-208ENST00000601220 ARAP1Q96P48 1450 aa32.51■■■□□ 2.79
CHMP2A-208ENST00000601220 MAGI1Q96QZ7 1491 aaPredicted RBP32.51■■■□□ 2.79
CHMP2A-208ENST00000601220 CHMP7Q8WUX9 453 aaPredicted RBP32.48■■■□□ 2.79
CHMP2A-208ENST00000601220 CLASP1Q7Z460 1538 aa32.44■■■□□ 2.78
CHMP2A-208ENST00000601220 SYNJ2O15056 1496 aa32.42■■■□□ 2.78
CHMP2A-208ENST00000601220 ABCA10Q8WWZ4 1543 aa32.41■■■□□ 2.78
CHMP2A-208ENST00000601220 GAPVD1Q14C86 1478 aa32.41■■■□□ 2.78
CHMP2A-208ENST00000601220 SYNJ1O43426 1573 aa32.35■■■□□ 2.77
CHMP2A-208ENST00000601220 ABCA5Q8WWZ7 1642 aa32.31■■■□□ 2.76
CHMP2A-208ENST00000601220 PBRM1Q86U86 1689 aa32.28■■■□□ 2.76
CHMP2A-208ENST00000601220 WRNQ14191 1432 aaPredicted RBP eCLIP32.26■■■□□ 2.76
CHMP2A-208ENST00000601220 TOP2BQ02880 1626 aa32.19■■■□□ 2.74
CHMP2A-208ENST00000601220 BIVM-ERCC5R4GMW8 1640 aa32.17■■■□□ 2.74
CHMP2A-208ENST00000601220 TRHP20396 242 aaPredicted RBP32.15■■■□□ 2.74
CHMP2A-208ENST00000601220 GRIN2AQ12879 1464 aa32.1■■■□□ 2.73
CHMP2A-208ENST00000601220 ADAMTS12P58397 1594 aa32.05■■■□□ 2.72
CHMP2A-208ENST00000601220 NUP160Q12769 1436 aa32.04■■■□□ 2.72
CHMP2A-208ENST00000601220 FHAD1B1AJZ9 1412 aa32.01■■■□□ 2.72
CHMP2A-208ENST00000601220 CEP170Q5SW79 1584 aa31.98■■■□□ 2.71
CHMP2A-208ENST00000601220 ERICH3Q5RHP9 1530 aa31.97■■■□□ 2.71
CHMP2A-208ENST00000601220 ERCC6L2Q5T890 1561 aa31.95■■■□□ 2.71
CHMP2A-208ENST00000601220 SHROOM2Q13796 1616 aa31.84■■■□□ 2.69
CHMP2A-208ENST00000601220 JPH4Q96JJ6 628 aa31.72■■■□□ 2.67
CHMP2A-208ENST00000601220 PRG4Q92954 1404 aaPredicted RBP31.7■■■□□ 2.67
CHMP2A-208ENST00000601220 IGF1RP08069 1367 aa31.67■■■□□ 2.66
CHMP2A-208ENST00000601220 RUSC2Q8N2Y8 1516 aa31.59■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms