RNA–Protein interactions for RNA: ENST00000600948.5

PLD3-223, Transcript of phospholipase D family member 3, human

TSL 2

Gene PLD3, Length 536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PLD3-223	ENST00000600948	NISCH	Q9Y2I1	1504 aa		38.14	■■■■□ 3.7
PLD3-223	ENST00000600948	CCDC180	Q9P1Z9	1646 aa		34.05	■■■■□ 3.04
PLD3-223	ENST00000600948	ABCC9	O60706	1549 aa		33.48	■■■□□ 2.95
PLD3-223	ENST00000600948	RB1CC1	Q8TDY2	1594 aa		32.12	■■■□□ 2.73
PLD3-223	ENST00000600948	NACAD	O15069	1562 aa		32.03	■■■□□ 2.72
PLD3-223	ENST00000600948	DCAF8L2	P0C7V8	631 aa		31.86	■■■□□ 2.69
PLD3-223	ENST00000600948	MYO15B	Q96JP2	1530 aa		31.78	■■■□□ 2.68
PLD3-223	ENST00000600948	ZCCHC6	Q5VYS8	1495 aa	Known RBP	31.74	■■■□□ 2.67
PLD3-223	ENST00000600948	DCAF1	Q9Y4B6	1507 aa		31.56	■■■□□ 2.64
PLD3-223	ENST00000600948	UNC13A	Q9UPW8	1703 aa		31.48	■■■□□ 2.63
PLD3-223	ENST00000600948	PABPN1	Q86U42	306 aa	Known RBP eCLIP	31.21	■■■□□ 2.59
PLD3-223	ENST00000600948	BICRA	Q9NZM4	1560 aa		31.2	■■■□□ 2.58
PLD3-223	ENST00000600948	SCRIB	Q14160	1630 aa		31.02	■■■□□ 2.56
PLD3-223	ENST00000600948	DNAJC5B	Q9UF47	199 aa		30.93	■■■□□ 2.54
PLD3-223	ENST00000600948	SHROOM4	Q9ULL8	1493 aa		30.82	■■■□□ 2.52
PLD3-223	ENST00000600948	EIF4G1	Q04637	1599 aa	Known RBP	30.37	■■■□□ 2.45
PLD3-223	ENST00000600948	CC2D2A	Q9P2K1	1620 aa		30.29	■■■□□ 2.44
PLD3-223	ENST00000600948	CECR2	Q9BXF3	1484 aa		30.1	■■■□□ 2.41
PLD3-223	ENST00000600948	SMARCA4	P51532	1647 aa		29.67	■■■□□ 2.34
PLD3-223	ENST00000600948	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.58	■■■□□ 2.33
PLD3-223	ENST00000600948	NCAPD3	P42695	1498 aa		29.55	■■■□□ 2.32
PLD3-223	ENST00000600948	ATAD2B	Q9ULI0	1458 aa		29.53	■■■□□ 2.32
PLD3-223	ENST00000600948	SMARCA2	P51531	1590 aa		29.49	■■■□□ 2.31
PLD3-223	ENST00000600948	HMGXB3	Q12766	1538 aa		29.4	■■■□□ 2.3
PLD3-223	ENST00000600948	MROH2B	Q7Z745	1585 aa		29.4	■■■□□ 2.3
PLD3-223	ENST00000600948	PEG3	Q9GZU2	1588 aa		29.39	■■■□□ 2.29
PLD3-223	ENST00000600948	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.27	■■■□□ 2.28
PLD3-223	ENST00000600948	WIZ	O95785	1651 aa		29.09	■■■□□ 2.25
PLD3-223	ENST00000600948	RSF1	Q96T23	1441 aa	Predicted RBP	28.96	■■■□□ 2.23
PLD3-223	ENST00000600948	NES	P48681	1621 aa		28.93	■■■□□ 2.22
PLD3-223	ENST00000600948	ERCC6	Q03468	1493 aa		28.85	■■■□□ 2.21
PLD3-223	ENST00000600948	LAMC3	Q9Y6N6	1575 aa		28.82	■■■□□ 2.2
PLD3-223	ENST00000600948	TOP2A	P11388	1531 aa	Known RBP	28.75	■■■□□ 2.19
PLD3-223	ENST00000600948	CUX2	O14529	1486 aa		28.66	■■■□□ 2.18
PLD3-223	ENST00000600948	CADPS	Q9ULU8	1353 aa		28.65	■■■□□ 2.18
PLD3-223	ENST00000600948	KIF21A	Q7Z4S6	1674 aa		28.61	■■■□□ 2.17
PLD3-223	ENST00000600948	PDS5B	Q9NTI5	1447 aa		28.59	■■■□□ 2.17
PLD3-223	ENST00000600948	THOC2	Q8NI27	1593 aa	Known RBP	28.57	■■■□□ 2.16
PLD3-223	ENST00000600948	CFTR	P13569	1480 aa		28.46	■■■□□ 2.15
PLD3-223	ENST00000600948	CCDC88B	A6NC98	1476 aa		28.4	■■■□□ 2.14
PLD3-223	ENST00000600948	FANCD2	Q9BXW9	1451 aa		28.34	■■■□□ 2.13
PLD3-223	ENST00000600948	MRC2	Q9UBG0	1479 aa		28.34	■■■□□ 2.13
PLD3-223	ENST00000600948	CEP164	Q9UPV0	1460 aa		28.33	■■■□□ 2.13
PLD3-223	ENST00000600948	PRDM2	Q13029	1718 aa		28.31	■■■□□ 2.12
PLD3-223	ENST00000600948	WDR62	O43379	1518 aa		28.28	■■■□□ 2.12
PLD3-223	ENST00000600948	URB2	Q14146	1524 aa	Known RBP	28.1	■■■□□ 2.09
PLD3-223	ENST00000600948	DNAJC5	Q9H3Z4	198 aa		28.01	■■■□□ 2.07
PLD3-223	ENST00000600948	SUPT5H	O00267	1087 aa	Known RBP	28	■■■□□ 2.07
PLD3-223	ENST00000600948	TOPBP1	Q92547	1522 aa		27.88	■■■□□ 2.05
PLD3-223	ENST00000600948	DNMBP	Q6XZF7	1577 aa		27.84	■■■□□ 2.05
PLD3-223	ENST00000600948	ABCC8	Q09428	1581 aa		27.83	■■■□□ 2.05
PLD3-223	ENST00000600948	IFT140	Q96RY7	1462 aa		27.74	■■■□□ 2.03
PLD3-223	ENST00000600948	ZNF608	Q9ULD9	1512 aa	Predicted RBP	27.65	■■■□□ 2.02
PLD3-223	ENST00000600948	POLA1	P09884	1462 aa	Predicted RBP	27.63	■■■□□ 2.01
PLD3-223	ENST00000600948	TARBP1	Q13395	1621 aa	Known RBP	27.62	■■■□□ 2.01
PLD3-223	ENST00000600948	CUX1	P39880	1505 aa		27.6	■■■□□ 2.01
PLD3-223	ENST00000600948	EIF4G3	O43432	1585 aa	Known RBP	27.56	■■■□□ 2
PLD3-223	ENST00000600948	FGD5	Q6ZNL6	1462 aa		27.52	■■■□□ 2
PLD3-223	ENST00000600948	RAD54L2	Q9Y4B4	1467 aa		27.5	■■□□□ 1.99
PLD3-223	ENST00000600948	SOGA1	O94964	1423 aa		27.48	■■□□□ 1.99
PLD3-223	ENST00000600948	AQR	O60306	1485 aa	Known RBP eCLIP	27.44	■■□□□ 1.98
PLD3-223	ENST00000600948	WDR97	A6NE52	1622 aa		27.38	■■□□□ 1.97
PLD3-223	ENST00000600948	OSCAR	Q8IYS5	282 aa		27.37	■■□□□ 1.97
PLD3-223	ENST00000600948	TDRD9	Q8NDG6	1382 aa	Known RBP	27.35	■■□□□ 1.97
PLD3-223	ENST00000600948	BIVM-ERCC5	R4GMW8	1640 aa		27.33	■■□□□ 1.97
PLD3-223	ENST00000600948	TOP2B	Q02880	1626 aa		27.3	■■□□□ 1.96
PLD3-223	ENST00000600948	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.3	■■□□□ 1.96
PLD3-223	ENST00000600948	SYNJ1	O43426	1573 aa		27.29	■■□□□ 1.96
PLD3-223	ENST00000600948	CHD1	O14646	1710 aa		27.28	■■□□□ 1.96
PLD3-223	ENST00000600948	ABCA10	Q8WWZ4	1543 aa		27.25	■■□□□ 1.95
PLD3-223	ENST00000600948	GRIN2B	Q13224	1484 aa		27.2	■■□□□ 1.95
PLD3-223	ENST00000600948	SNAPC4	Q5SXM2	1469 aa		27.2	■■□□□ 1.95
PLD3-223	ENST00000600948	ABCA5	Q8WWZ7	1642 aa		27.19	■■□□□ 1.94
PLD3-223	ENST00000600948	PBRM1	Q86U86	1689 aa		27.19	■■□□□ 1.94
PLD3-223	ENST00000600948	GAPVD1	Q14C86	1478 aa		27.18	■■□□□ 1.94
PLD3-223	ENST00000600948	MAGI1	Q96QZ7	1491 aa	Predicted RBP	27.16	■■□□□ 1.94
PLD3-223	ENST00000600948	FBLN2	P98095	1184 aa		27.1	■■□□□ 1.93
PLD3-223	ENST00000600948	SYNJ2	O15056	1496 aa		27.05	■■□□□ 1.92
PLD3-223	ENST00000600948	RIMBP3C	A6NJZ7	1639 aa		27.05	■■□□□ 1.92
PLD3-223	ENST00000600948	RIMBP3B	A6NNM3	1639 aa		27.05	■■□□□ 1.92
PLD3-223	ENST00000600948	RIMBP3	Q9UFD9	1639 aa		27.05	■■□□□ 1.92
PLD3-223	ENST00000600948	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.01	■■□□□ 1.91
PLD3-223	ENST00000600948	ARHGEF11	O15085	1522 aa		27	■■□□□ 1.91
PLD3-223	ENST00000600948	TRIM41	Q8WV44	630 aa		26.96	■■□□□ 1.91
PLD3-223	ENST00000600948	CLASP1	Q7Z460	1538 aa		26.95	■■□□□ 1.91
PLD3-223	ENST00000600948	ADAMTS12	P58397	1594 aa		26.94	■■□□□ 1.9
PLD3-223	ENST00000600948	ERICH3	Q5RHP9	1530 aa		26.91	■■□□□ 1.9
PLD3-223	ENST00000600948	GRIN2A	Q12879	1464 aa		26.86	■■□□□ 1.89
PLD3-223	ENST00000600948	FHAD1	B1AJZ9	1412 aa		26.84	■■□□□ 1.89
PLD3-223	ENST00000600948	ARAP1	Q96P48	1450 aa		26.77	■■□□□ 1.88
PLD3-223	ENST00000600948	CEP170	Q5SW79	1584 aa		26.76	■■□□□ 1.87
PLD3-223	ENST00000600948	NUP160	Q12769	1436 aa		26.76	■■□□□ 1.87
PLD3-223	ENST00000600948	KIF27	Q86VH2	1401 aa		26.74	■■□□□ 1.87
PLD3-223	ENST00000600948	CYB5RL	Q6IPT4	315 aa		26.69	■■□□□ 1.86
PLD3-223	ENST00000600948	IGF1R	P08069	1367 aa		26.66	■■□□□ 1.86
PLD3-223	ENST00000600948	CUL7	Q14999	1698 aa		26.65	■■□□□ 1.86
PLD3-223	ENST00000600948	SHROOM2	Q13796	1616 aa		26.61	■■□□□ 1.85
PLD3-223	ENST00000600948	ERCC6L2	Q5T890	1561 aa		26.57	■■□□□ 1.84
PLD3-223	ENST00000600948	RUSC2	Q8N2Y8	1516 aa		26.55	■■□□□ 1.84
PLD3-223	ENST00000600948	CARMIL1	Q5VZK9	1371 aa		26.5	■■□□□ 1.83

Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms