RNA–Protein interactions for RNA: ENST00000600927.1

ZNF548-211, Transcript of zinc finger protein 548, humanhuman

TSL 3

Gene ZNF548, Length 616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF548-211ENST00000600927 NISCHQ9Y2I1 1504 aa27.71■■■□□ 2.03
ZNF548-211ENST00000600927 CCDC180Q9P1Z9 1646 aa24.71■■□□□ 1.55
ZNF548-211ENST00000600927 ABCC9O60706 1549 aa24.13■■□□□ 1.45
ZNF548-211ENST00000600927 RB1CC1Q8TDY2 1594 aa23.23■■□□□ 1.31
ZNF548-211ENST00000600927 NACADO15069 1562 aa23.22■■□□□ 1.31
ZNF548-211ENST00000600927 MYO15BQ96JP2 1530 aa23.13■■□□□ 1.29
ZNF548-211ENST00000600927 ZCCHC6Q5VYS8 1495 aaKnown RBP23.11■■□□□ 1.29
ZNF548-211ENST00000600927 DCAF1Q9Y4B6 1507 aa22.99■■□□□ 1.27
ZNF548-211ENST00000600927 DCAF8L2P0C7V8 631 aa22.91■■□□□ 1.26
ZNF548-211ENST00000600927 UNC13AQ9UPW8 1703 aa22.73■■□□□ 1.23
ZNF548-211ENST00000600927 BICRAQ9NZM4 1560 aa22.6■■□□□ 1.21
ZNF548-211ENST00000600927 PABPN1Q86U42 306 aaKnown RBP eCLIP22.47■■□□□ 1.19
ZNF548-211ENST00000600927 SCRIBQ14160 1630 aa22.46■■□□□ 1.19
ZNF548-211ENST00000600927 SHROOM4Q9ULL8 1493 aa22.4■■□□□ 1.18
ZNF548-211ENST00000600927 DNAJC5BQ9UF47 199 aa22.23■■□□□ 1.15
ZNF548-211ENST00000600927 EIF4G1Q04637 1599 aaKnown RBP21.97■■□□□ 1.11
ZNF548-211ENST00000600927 CC2D2AQ9P2K1 1620 aa21.88■■□□□ 1.09
ZNF548-211ENST00000600927 CECR2Q9BXF3 1484 aa21.72■■□□□ 1.07
ZNF548-211ENST00000600927 SMARCA4P51532 1647 aa21.52■■□□□ 1.04
ZNF548-211ENST00000600927 BAZ1AQ9NRL2 1556 aaPredicted RBP21.47■■□□□ 1.03
ZNF548-211ENST00000600927 NCAPD3P42695 1498 aa21.43■■□□□ 1.02
ZNF548-211ENST00000600927 ATAD2BQ9ULI0 1458 aa21.41■■□□□ 1.02
ZNF548-211ENST00000600927 SMARCA2P51531 1590 aa21.38■■□□□ 1.01
ZNF548-211ENST00000600927 PEG3Q9GZU2 1588 aa21.38■■□□□ 1.01
ZNF548-211ENST00000600927 HMGXB3Q12766 1538 aa21.34■■□□□ 1.01
ZNF548-211ENST00000600927 MROH2BQ7Z745 1585 aa21.34■■□□□ 1.01
ZNF548-211ENST00000600927 BAZ1BQ9UIG0 1483 aaKnown RBP21.2■□□□□ 0.98
ZNF548-211ENST00000600927 WIZO95785 1651 aa21.09■□□□□ 0.97
ZNF548-211ENST00000600927 RSF1Q96T23 1441 aaPredicted RBP21.05■□□□□ 0.96
ZNF548-211ENST00000600927 TOP2AP11388 1531 aaKnown RBP20.89■□□□□ 0.94
ZNF548-211ENST00000600927 NESP48681 1621 aa20.89■□□□□ 0.93
ZNF548-211ENST00000600927 LAMC3Q9Y6N6 1575 aa20.87■□□□□ 0.93
ZNF548-211ENST00000600927 ERCC6Q03468 1493 aa20.78■□□□□ 0.92
ZNF548-211ENST00000600927 CADPSQ9ULU8 1353 aa20.75■□□□□ 0.91
ZNF548-211ENST00000600927 CUX2O14529 1486 aa20.69■□□□□ 0.9
ZNF548-211ENST00000600927 PDS5BQ9NTI5 1447 aa20.68■□□□□ 0.9
ZNF548-211ENST00000600927 THOC2Q8NI27 1593 aaKnown RBP20.67■□□□□ 0.9
ZNF548-211ENST00000600927 CFTRP13569 1480 aa20.66■□□□□ 0.9
ZNF548-211ENST00000600927 KIF21AQ7Z4S6 1674 aa20.66■□□□□ 0.9
ZNF548-211ENST00000600927 CCDC88BA6NC98 1476 aa20.61■□□□□ 0.89
ZNF548-211ENST00000600927 FANCD2Q9BXW9 1451 aa20.51■□□□□ 0.87
ZNF548-211ENST00000600927 PRDM2Q13029 1718 aa20.5■□□□□ 0.87
ZNF548-211ENST00000600927 MRC2Q9UBG0 1479 aa20.5■□□□□ 0.87
ZNF548-211ENST00000600927 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
ZNF548-211ENST00000600927 WDR62O43379 1518 aa20.48■□□□□ 0.87
ZNF548-211ENST00000600927 URB2Q14146 1524 aaKnown RBP20.35■□□□□ 0.85
ZNF548-211ENST00000600927 SUPT5HO00267 1087 aaKnown RBP20.28■□□□□ 0.84
ZNF548-211ENST00000600927 TOPBP1Q92547 1522 aa20.2■□□□□ 0.82
ZNF548-211ENST00000600927 DNMBPQ6XZF7 1577 aa20.19■□□□□ 0.82
ZNF548-211ENST00000600927 ABCC8Q09428 1581 aa20.17■□□□□ 0.82
ZNF548-211ENST00000600927 IFT140Q96RY7 1462 aa20.09■□□□□ 0.81
ZNF548-211ENST00000600927 DNAJC5Q9H3Z4 198 aa20.06■□□□□ 0.8
ZNF548-211ENST00000600927 POLA1P09884 1462 aaPredicted RBP20.04■□□□□ 0.8
ZNF548-211ENST00000600927 CUX1P39880 1505 aa20.03■□□□□ 0.8
ZNF548-211ENST00000600927 TARBP1Q13395 1621 aaKnown RBP20.02■□□□□ 0.8
ZNF548-211ENST00000600927 ZNF608Q9ULD9 1512 aaPredicted RBP20■□□□□ 0.79
ZNF548-211ENST00000600927 FGD5Q6ZNL6 1462 aa19.95■□□□□ 0.78
ZNF548-211ENST00000600927 EIF4G3O43432 1585 aaKnown RBP19.95■□□□□ 0.78
ZNF548-211ENST00000600927 RAD54L2Q9Y4B4 1467 aa19.9■□□□□ 0.78
ZNF548-211ENST00000600927 WDR97A6NE52 1622 aa19.89■□□□□ 0.77
ZNF548-211ENST00000600927 SOGA1O94964 1423 aa19.88■□□□□ 0.77
ZNF548-211ENST00000600927 BIVM-ERCC5R4GMW8 1640 aa19.87■□□□□ 0.77
ZNF548-211ENST00000600927 TOP2BQ02880 1626 aa19.85■□□□□ 0.77
ZNF548-211ENST00000600927 AQRO60306 1485 aaKnown RBP eCLIP19.84■□□□□ 0.77
ZNF548-211ENST00000600927 SYNJ1O43426 1573 aa19.83■□□□□ 0.77
ZNF548-211ENST00000600927 WRNQ14191 1432 aaPredicted RBP eCLIP19.83■□□□□ 0.76
ZNF548-211ENST00000600927 ABCA10Q8WWZ4 1543 aa19.79■□□□□ 0.76
ZNF548-211ENST00000600927 TDRD9Q8NDG6 1382 aaKnown RBP19.76■□□□□ 0.75
ZNF548-211ENST00000600927 ABCA5Q8WWZ7 1642 aa19.75■□□□□ 0.75
ZNF548-211ENST00000600927 GRIN2BQ13224 1484 aa19.7■□□□□ 0.74
ZNF548-211ENST00000600927 OSCARQ8IYS5 282 aa19.69■□□□□ 0.74
ZNF548-211ENST00000600927 SNAPC4Q5SXM2 1469 aa19.68■□□□□ 0.74
ZNF548-211ENST00000600927 MAGI1Q96QZ7 1491 aaPredicted RBP19.68■□□□□ 0.74
ZNF548-211ENST00000600927 CHD1O14646 1710 aa19.68■□□□□ 0.74
ZNF548-211ENST00000600927 GAPVD1Q14C86 1478 aa19.67■□□□□ 0.74
ZNF548-211ENST00000600927 PBRM1Q86U86 1689 aa19.67■□□□□ 0.74
ZNF548-211ENST00000600927 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
ZNF548-211ENST00000600927 ERICH3Q5RHP9 1530 aa19.55■□□□□ 0.72
ZNF548-211ENST00000600927 ADAMTS12P58397 1594 aa19.54■□□□□ 0.72
ZNF548-211ENST00000600927 CLASP1Q7Z460 1538 aa19.52■□□□□ 0.72
ZNF548-211ENST00000600927 RIMBP3CA6NJZ7 1639 aa19.48■□□□□ 0.71
ZNF548-211ENST00000600927 RIMBP3BA6NNM3 1639 aa19.48■□□□□ 0.71
ZNF548-211ENST00000600927 RIMBP3Q9UFD9 1639 aa19.48■□□□□ 0.71
ZNF548-211ENST00000600927 ARHGEF11O15085 1522 aa19.48■□□□□ 0.71
ZNF548-211ENST00000600927 FBLN2P98095 1184 aa19.48■□□□□ 0.71
ZNF548-211ENST00000600927 CHMP7Q8WUX9 453 aaPredicted RBP19.47■□□□□ 0.71
ZNF548-211ENST00000600927 FHAD1B1AJZ9 1412 aa19.46■□□□□ 0.71
ZNF548-211ENST00000600927 GRIN2AQ12879 1464 aa19.46■□□□□ 0.71
ZNF548-211ENST00000600927 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
ZNF548-211ENST00000600927 NUP160Q12769 1436 aa19.42■□□□□ 0.7
ZNF548-211ENST00000600927 KIF27Q86VH2 1401 aa19.41■□□□□ 0.7
ZNF548-211ENST00000600927 CEP170Q5SW79 1584 aa19.38■□□□□ 0.69
ZNF548-211ENST00000600927 IGF1RP08069 1367 aa19.35■□□□□ 0.69
ZNF548-211ENST00000600927 CUL7Q14999 1698 aa19.35■□□□□ 0.69
ZNF548-211ENST00000600927 ARAP1Q96P48 1450 aa19.33■□□□□ 0.68
ZNF548-211ENST00000600927 SHROOM2Q13796 1616 aa19.29■□□□□ 0.68
ZNF548-211ENST00000600927 RUSC2Q8N2Y8 1516 aa19.27■□□□□ 0.68
ZNF548-211ENST00000600927 TRIM41Q8WV44 630 aa19.25■□□□□ 0.67
ZNF548-211ENST00000600927 ERCC6L2Q5T890 1561 aa19.21■□□□□ 0.67
ZNF548-211ENST00000600927 CARMIL1Q5VZK9 1371 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms