RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 NISCHQ9Y2I1 1504 aa39.65■■■■□ 3.94
LSM4-206ENST00000600289 ABCC9O60706 1549 aa35.93■■■■□ 3.34
LSM4-206ENST00000600289 CCDC180Q9P1Z9 1646 aa35.43■■■■□ 3.26
LSM4-206ENST00000600289 DNAJC5BQ9UF47 199 aa34.64■■■■□ 3.14
LSM4-206ENST00000600289 RB1CC1Q8TDY2 1594 aa33.77■■■■□ 3
LSM4-206ENST00000600289 NACADO15069 1562 aa33.27■■■□□ 2.92
LSM4-206ENST00000600289 UNC13AQ9UPW8 1703 aa33.25■■■□□ 2.91
LSM4-206ENST00000600289 PABPN1Q86U42 306 aaKnown RBP eCLIP33.18■■■□□ 2.9
LSM4-206ENST00000600289 MYO15BQ96JP2 1530 aa33.07■■■□□ 2.89
LSM4-206ENST00000600289 ZCCHC6Q5VYS8 1495 aaKnown RBP33.05■■■□□ 2.88
LSM4-206ENST00000600289 BICRAQ9NZM4 1560 aa32.94■■■□□ 2.86
LSM4-206ENST00000600289 DCAF1Q9Y4B6 1507 aa32.91■■■□□ 2.86
LSM4-206ENST00000600289 DCAF8L2P0C7V8 631 aa32.8■■■□□ 2.84
LSM4-206ENST00000600289 DNAJC5Q9H3Z4 198 aa32.51■■■□□ 2.79
LSM4-206ENST00000600289 CC2D2AQ9P2K1 1620 aa32.48■■■□□ 2.79
LSM4-206ENST00000600289 CECR2Q9BXF3 1484 aa32.46■■■□□ 2.79
LSM4-206ENST00000600289 SHROOM4Q9ULL8 1493 aa32.28■■■□□ 2.76
LSM4-206ENST00000600289 EIF4G1Q04637 1599 aaKnown RBP32.15■■■□□ 2.74
LSM4-206ENST00000600289 SCRIBQ14160 1630 aa32.14■■■□□ 2.74
LSM4-206ENST00000600289 CUX2O14529 1486 aa31.4■■■□□ 2.62
LSM4-206ENST00000600289 ERCC6Q03468 1493 aa31.02■■■□□ 2.56
LSM4-206ENST00000600289 SMARCA4P51532 1647 aa30.81■■■□□ 2.52
LSM4-206ENST00000600289 BAZ1AQ9NRL2 1556 aaPredicted RBP30.76■■■□□ 2.52
LSM4-206ENST00000600289 NCAPD3P42695 1498 aa30.7■■■□□ 2.51
LSM4-206ENST00000600289 THOC2Q8NI27 1593 aaKnown RBP30.62■■■□□ 2.49
LSM4-206ENST00000600289 SMARCA2P51531 1590 aa30.61■■■□□ 2.49
LSM4-206ENST00000600289 NESP48681 1621 aa30.61■■■□□ 2.49
LSM4-206ENST00000600289 PEG3Q9GZU2 1588 aa30.58■■■□□ 2.49
LSM4-206ENST00000600289 ATAD2BQ9ULI0 1458 aa30.58■■■□□ 2.49
LSM4-206ENST00000600289 TRIM41Q8WV44 630 aa30.58■■■□□ 2.49
LSM4-206ENST00000600289 HMGXB3Q12766 1538 aa30.52■■■□□ 2.48
LSM4-206ENST00000600289 MROH2BQ7Z745 1585 aa30.51■■■□□ 2.47
LSM4-206ENST00000600289 BAZ1BQ9UIG0 1483 aaKnown RBP30.32■■■□□ 2.44
LSM4-206ENST00000600289 KIF21AQ7Z4S6 1674 aa30.3■■■□□ 2.44
LSM4-206ENST00000600289 LAMC3Q9Y6N6 1575 aa30.24■■■□□ 2.43
LSM4-206ENST00000600289 WIZO95785 1651 aa30.22■■■□□ 2.43
LSM4-206ENST00000600289 RSF1Q96T23 1441 aaPredicted RBP30.12■■■□□ 2.41
LSM4-206ENST00000600289 PDS5BQ9NTI5 1447 aa29.96■■■□□ 2.39
LSM4-206ENST00000600289 TOP2AP11388 1531 aaKnown RBP29.93■■■□□ 2.38
LSM4-206ENST00000600289 WDR62O43379 1518 aa29.89■■■□□ 2.38
LSM4-206ENST00000600289 MRC2Q9UBG0 1479 aa29.85■■■□□ 2.37
LSM4-206ENST00000600289 CADPSQ9ULU8 1353 aa29.66■■■□□ 2.34
LSM4-206ENST00000600289 OSCARQ8IYS5 282 aa29.64■■■□□ 2.34
LSM4-206ENST00000600289 RIMBP3CA6NJZ7 1639 aa29.62■■■□□ 2.33
LSM4-206ENST00000600289 RIMBP3BA6NNM3 1639 aa29.62■■■□□ 2.33
LSM4-206ENST00000600289 RIMBP3Q9UFD9 1639 aa29.62■■■□□ 2.33
LSM4-206ENST00000600289 PRDM2Q13029 1718 aa29.51■■■□□ 2.32
LSM4-206ENST00000600289 CFTRP13569 1480 aa29.51■■■□□ 2.31
LSM4-206ENST00000600289 CEP164Q9UPV0 1460 aa29.5■■■□□ 2.31
LSM4-206ENST00000600289 CCDC88BA6NC98 1476 aa29.48■■■□□ 2.31
LSM4-206ENST00000600289 FANCD2Q9BXW9 1451 aa29.37■■■□□ 2.29
LSM4-206ENST00000600289 ARHGEF11O15085 1522 aa29.35■■■□□ 2.29
LSM4-206ENST00000600289 URB2Q14146 1524 aaKnown RBP29.26■■■□□ 2.27
LSM4-206ENST00000600289 SUPT5HO00267 1087 aaKnown RBP29.11■■■□□ 2.25
LSM4-206ENST00000600289 ZNF608Q9ULD9 1512 aaPredicted RBP29.06■■■□□ 2.24
LSM4-206ENST00000600289 CYB5RLQ6IPT4 315 aa29.03■■■□□ 2.24
LSM4-206ENST00000600289 ARAP1Q96P48 1450 aa29.01■■■□□ 2.23
LSM4-206ENST00000600289 TRHP20396 242 aaPredicted RBP29■■■□□ 2.23
LSM4-206ENST00000600289 CHD1O14646 1710 aa28.96■■■□□ 2.23
LSM4-206ENST00000600289 IFT140Q96RY7 1462 aa28.94■■■□□ 2.22
LSM4-206ENST00000600289 EIF4G3O43432 1585 aaKnown RBP28.92■■■□□ 2.22
LSM4-206ENST00000600289 ABCC8Q09428 1581 aa28.92■■■□□ 2.22
LSM4-206ENST00000600289 AEBP2Q6ZN18 517 aaPredicted RBP28.9■■■□□ 2.22
LSM4-206ENST00000600289 DNMBPQ6XZF7 1577 aa28.89■■■□□ 2.22
LSM4-206ENST00000600289 TOPBP1Q92547 1522 aa28.87■■■□□ 2.21
LSM4-206ENST00000600289 TARBP1Q13395 1621 aaKnown RBP28.65■■■□□ 2.18
LSM4-206ENST00000600289 CUX1P39880 1505 aa28.64■■■□□ 2.18
LSM4-206ENST00000600289 POLA1P09884 1462 aaPredicted RBP28.62■■■□□ 2.17
LSM4-206ENST00000600289 AQRO60306 1485 aaKnown RBP eCLIP28.6■■■□□ 2.175e-8■■□□□ 13.7
LSM4-206ENST00000600289 CLASP1Q7Z460 1538 aa28.53■■■□□ 2.16
LSM4-206ENST00000600289 FGD5Q6ZNL6 1462 aa28.53■■■□□ 2.16
LSM4-206ENST00000600289 WDR97A6NE52 1622 aa28.51■■■□□ 2.15
LSM4-206ENST00000600289 BIVM-ERCC5R4GMW8 1640 aa28.51■■■□□ 2.15
LSM4-206ENST00000600289 FBLN2P98095 1184 aa28.47■■■□□ 2.15
LSM4-206ENST00000600289 TOP2BQ02880 1626 aa28.45■■■□□ 2.14
LSM4-206ENST00000600289 SOGA1O94964 1423 aa28.43■■■□□ 2.14
LSM4-206ENST00000600289 RAD54L2Q9Y4B4 1467 aa28.42■■■□□ 2.14
LSM4-206ENST00000600289 WRNQ14191 1432 aaPredicted RBP eCLIP28.4■■■□□ 2.14
LSM4-206ENST00000600289 SYNJ1O43426 1573 aa28.4■■■□□ 2.14
LSM4-206ENST00000600289 SNAPC4Q5SXM2 1469 aa28.32■■■□□ 2.12
LSM4-206ENST00000600289 ABCA10Q8WWZ4 1543 aa28.3■■■□□ 2.12
LSM4-206ENST00000600289 ABCA5Q8WWZ7 1642 aa28.25■■■□□ 2.11
LSM4-206ENST00000600289 PBRM1Q86U86 1689 aa28.24■■■□□ 2.11
LSM4-206ENST00000600289 TDRD9Q8NDG6 1382 aaKnown RBP28.22■■■□□ 2.11
LSM4-206ENST00000600289 GAPVD1Q14C86 1478 aa28.21■■■□□ 2.11
LSM4-206ENST00000600289 MAGI1Q96QZ7 1491 aaPredicted RBP28.18■■■□□ 2.1
LSM4-206ENST00000600289 GRIN2BQ13224 1484 aa28.17■■■□□ 2.1
LSM4-206ENST00000600289 SYNJ2O15056 1496 aa28.1■■■□□ 2.09
LSM4-206ENST00000600289 CHMP7Q8WUX9 453 aaPredicted RBP28.1■■■□□ 2.09
LSM4-206ENST00000600289 KIF13AQ9H1H9 1805 aa28.08■■■□□ 2.09
LSM4-206ENST00000600289 ERCC6L2Q5T890 1561 aa28.03■■■□□ 2.08
LSM4-206ENST00000600289 ERICH3Q5RHP9 1530 aa27.99■■■□□ 2.07
LSM4-206ENST00000600289 ADAMTS12P58397 1594 aa27.96■■■□□ 2.07
LSM4-206ENST00000600289 ILDR1Q86SU0 546 aaPredicted RBP27.92■■■□□ 2.06
LSM4-206ENST00000600289 CEP170Q5SW79 1584 aa27.83■■■□□ 2.05
LSM4-206ENST00000600289 FHAD1B1AJZ9 1412 aa27.83■■■□□ 2.05
LSM4-206ENST00000600289 GRIN2AQ12879 1464 aa27.82■■■□□ 2.04
LSM4-206ENST00000600289 KIF27Q86VH2 1401 aa27.81■■■□□ 2.04
LSM4-206ENST00000600289 SHROOM2Q13796 1616 aa27.79■■■□□ 2.04
LSM4-206ENST00000600289 CUL7Q14999 1698 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms