RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DDX3XO00571 662 aaKnown RBP eCLIP16.69■□□□□ 0.261e-52■■■■■ 70.2
LSM4-206ENST00000600289 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.08■□□□□ 0.486e-40■■■■■ 76.3
LSM4-206ENST00000600289 UPF1Q92900 1129 aaKnown RBP eCLIP24.2■■□□□ 1.468e-33■■■□□ 18.1
LSM4-206ENST00000600289 HNRNPMP52272 730 aaKnown RBP eCLIP25.35■■□□□ 1.656e-16■□□□□ 10.9
LSM4-206ENST00000600289 PABPC4Q13310 644 aaKnown RBP eCLIP19.33■□□□□ 0.682e-14■■■■□ 19.6
LSM4-206ENST00000600289 NOLC1Q14978 699 aaKnown RBP eCLIP17.71■□□□□ 0.439e-14■■■■■ 27.3
LSM4-206ENST00000600289 SUB1P53999 127 aaKnown RBP eCLIP12.27□□□□□ -0.455e-12■■■■■ 99.5
LSM4-206ENST00000600289 EFTUD2Q15029 972 aaKnown RBP eCLIP15.47■□□□□ 0.072e-11■■■■■ 29.6
LSM4-206ENST00000600289 YBX3P16989 372 aaKnown RBP eCLIP21.8■■□□□ 1.081e-10■■■□□ 15.9
LSM4-206ENST00000600289 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.17■□□□□ 0.341e-9■■■■■ 59.3
LSM4-206ENST00000600289 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.9□□□□□ -0.022e-9■■■□□ 15.1
LSM4-206ENST00000600289 TIA1P31483 386 aaKnown RBP eCLIP15.04■□□□□ -01e-8■■■□□ 17.7
LSM4-206ENST00000600289 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.68■□□□□ 0.742e-8■■■□□ 17.4
LSM4-206ENST00000600289 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.6■□□□□ 0.733e-8■■□□□ 14.5
LSM4-206ENST00000600289 AQRO60306 1485 aaKnown RBP eCLIP28.6■■■□□ 2.175e-8■■□□□ 13.7
LSM4-206ENST00000600289 FXR2P51116 673 aaKnown RBP eCLIP18.11■□□□□ 0.496e-8■□□□□ 9.9
LSM4-206ENST00000600289 PUM1Q14671 1186 aaKnown RBP eCLIP17.27■□□□□ 0.368e-8■□□□□ 9.6
LSM4-206ENST00000600289 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.01■□□□□ 0.631e-7■■■□□ 16
LSM4-206ENST00000600289 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.93■□□□□ 0.621e-7■■■□□ 17.2
LSM4-206ENST00000600289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.57■■□□□ 1.522e-7■□□□□ 8
LSM4-206ENST00000600289 RPS3P23396 243 aaKnown RBP eCLIP15.79■□□□□ 0.123e-7■□□□□ 8.1
LSM4-206ENST00000600289 METAP2P50579 478 aaKnown RBP eCLIP18.67■□□□□ 0.583e-7■■■■■ 36.2
LSM4-206ENST00000600289 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.1■■□□□ 1.774e-7■■■□□ 15.9
LSM4-206ENST00000600289 NCBP2P52298 156 aaKnown RBP eCLIP14.89□□□□□ -0.034e-7■□□□□ 8.2
LSM4-206ENST00000600289 RBM15Q96T37 977 aaKnown RBP eCLIP16.18■□□□□ 0.185e-7■■■■□ 23.6
LSM4-206ENST00000600289 SF3B1O75533 1304 aaKnown RBP eCLIP17.63■□□□□ 0.416e-7■■■■■ 71.8
LSM4-206ENST00000600289 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.73□□□□□ -0.218e-7■■■■■ 27.2
LSM4-206ENST00000600289 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.97■■□□□ 1.591e-6■■■■■ 37.1
LSM4-206ENST00000600289 LARP4Q71RC2 724 aaKnown RBP eCLIP14.84□□□□□ -0.031e-6■■■□□ 15.8
LSM4-206ENST00000600289 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.71■□□□□ 0.273e-6■■■□□ 18.4
LSM4-206ENST00000600289 ZRANB2O95218 330 aaKnown RBP eCLIP16.3■□□□□ 0.23e-6■■■■■ 27.8
LSM4-206ENST00000600289 HNRNPKP61978 463 aaKnown RBP eCLIP16.19■□□□□ 0.185e-6■□□□□ 11.2
Retrieved 32 of 32 RNA–protein pairs in 7.6 ms