RNA–Protein interactions for RNA: ENST00000599964.1

COPE-209, Transcript of coatomer protein complex subunit epsilon, humanhuman

TSL 4

Gene COPE, Length 542 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPE-209ENST00000599964 NISCHQ9Y2I1 1504 aa45.05■■■■■ 4.8
COPE-209ENST00000599964 CCDC180Q9P1Z9 1646 aa39.86■■■■□ 3.97
COPE-209ENST00000599964 ABCC9O60706 1549 aa38.43■■■■□ 3.74
COPE-209ENST00000599964 ZCCHC6Q5VYS8 1495 aaKnown RBP37.63■■■■□ 3.61
COPE-209ENST00000599964 DCAF8L2P0C7V8 631 aa37.46■■■■□ 3.59
COPE-209ENST00000599964 NACADO15069 1562 aa37.35■■■■□ 3.57
COPE-209ENST00000599964 DCAF1Q9Y4B6 1507 aa37.33■■■■□ 3.57
COPE-209ENST00000599964 MYO15BQ96JP2 1530 aa37.3■■■■□ 3.56
COPE-209ENST00000599964 RB1CC1Q8TDY2 1594 aa37.27■■■■□ 3.56
COPE-209ENST00000599964 SCRIBQ14160 1630 aa36.37■■■■□ 3.41
COPE-209ENST00000599964 UNC13AQ9UPW8 1703 aa36.35■■■■□ 3.41
COPE-209ENST00000599964 BICRAQ9NZM4 1560 aa36.02■■■■□ 3.36
COPE-209ENST00000599964 PABPN1Q86U42 306 aaKnown RBP eCLIP35.98■■■■□ 3.35
COPE-209ENST00000599964 SHROOM4Q9ULL8 1493 aa35.88■■■■□ 3.33
COPE-209ENST00000599964 EIF4G1Q04637 1599 aaKnown RBP35.08■■■■□ 3.21
COPE-209ENST00000599964 CECR2Q9BXF3 1484 aa34.97■■■■□ 3.19
COPE-209ENST00000599964 BAZ1AQ9NRL2 1556 aaPredicted RBP34.92■■■■□ 3.18
COPE-209ENST00000599964 SMARCA4P51532 1647 aa34.84■■■■□ 3.17
COPE-209ENST00000599964 CC2D2AQ9P2K1 1620 aa34.79■■■■□ 3.16
COPE-209ENST00000599964 MROH2BQ7Z745 1585 aa34.7■■■■□ 3.14
COPE-209ENST00000599964 DNAJC5BQ9UF47 199 aa34.68■■■■□ 3.14
COPE-209ENST00000599964 SMARCA2P51531 1590 aa34.56■■■■□ 3.12
COPE-209ENST00000599964 RSF1Q96T23 1441 aaPredicted RBP34.5■■■■□ 3.11
COPE-209ENST00000599964 ATAD2BQ9ULI0 1458 aa34.5■■■■□ 3.11
COPE-209ENST00000599964 PEG3Q9GZU2 1588 aa34.49■■■■□ 3.11
COPE-209ENST00000599964 NCAPD3P42695 1498 aa34.42■■■■□ 3.1
COPE-209ENST00000599964 WIZO95785 1651 aa34.36■■■■□ 3.09
COPE-209ENST00000599964 HMGXB3Q12766 1538 aa34.32■■■■□ 3.08
COPE-209ENST00000599964 BAZ1BQ9UIG0 1483 aaKnown RBP34.29■■■■□ 3.08
COPE-209ENST00000599964 SUPT5HO00267 1087 aaKnown RBP34.08■■■■□ 3.05
COPE-209ENST00000599964 TOP2AP11388 1531 aaKnown RBP34.07■■■■□ 3.04
COPE-209ENST00000599964 CCDC88BA6NC98 1476 aa33.63■■■□□ 2.97
COPE-209ENST00000599964 LAMC3Q9Y6N6 1575 aa33.47■■■□□ 2.95
COPE-209ENST00000599964 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
COPE-209ENST00000599964 NESP48681 1621 aa33.38■■■□□ 2.93
COPE-209ENST00000599964 CFTRP13569 1480 aa33.36■■■□□ 2.93
COPE-209ENST00000599964 PDS5BQ9NTI5 1447 aa33.24■■■□□ 2.91
COPE-209ENST00000599964 PRDM2Q13029 1718 aa33.19■■■□□ 2.9
COPE-209ENST00000599964 ERCC6Q03468 1493 aa33.15■■■□□ 2.9
COPE-209ENST00000599964 FANCD2Q9BXW9 1451 aa33.07■■■□□ 2.88
COPE-209ENST00000599964 KIF21AQ7Z4S6 1674 aa33.04■■■□□ 2.88
COPE-209ENST00000599964 CEP164Q9UPV0 1460 aa33.01■■■□□ 2.88
COPE-209ENST00000599964 MRC2Q9UBG0 1479 aa32.83■■■□□ 2.85
COPE-209ENST00000599964 THOC2Q8NI27 1593 aaKnown RBP32.78■■■□□ 2.84
COPE-209ENST00000599964 ABCC8Q09428 1581 aa32.7■■■□□ 2.83
COPE-209ENST00000599964 WDR62O43379 1518 aa32.68■■■□□ 2.82
COPE-209ENST00000599964 URB2Q14146 1524 aaKnown RBP32.67■■■□□ 2.82
COPE-209ENST00000599964 DNMBPQ6XZF7 1577 aa32.62■■■□□ 2.81
COPE-209ENST00000599964 TOPBP1Q92547 1522 aa32.59■■■□□ 2.81
COPE-209ENST00000599964 CUX2O14529 1486 aa32.59■■■□□ 2.81
COPE-209ENST00000599964 WRNQ14191 1432 aaPredicted RBP eCLIP32.57■■■□□ 2.8
COPE-209ENST00000599964 CUX1P39880 1505 aa32.52■■■□□ 2.8
COPE-209ENST00000599964 TOP2BQ02880 1626 aa32.43■■■□□ 2.78
COPE-209ENST00000599964 BIVM-ERCC5R4GMW8 1640 aa32.42■■■□□ 2.78
COPE-209ENST00000599964 SYNJ1O43426 1573 aa32.41■■■□□ 2.78
COPE-209ENST00000599964 FGD5Q6ZNL6 1462 aa32.35■■■□□ 2.77
COPE-209ENST00000599964 POLA1P09884 1462 aaPredicted RBP32.35■■■□□ 2.77
COPE-209ENST00000599964 IFT140Q96RY7 1462 aa32.29■■■□□ 2.76
COPE-209ENST00000599964 SOGA1O94964 1423 aa32.26■■■□□ 2.75
COPE-209ENST00000599964 TRIM41Q8WV44 630 aa32.2■■■□□ 2.75
COPE-209ENST00000599964 TARBP1Q13395 1621 aaKnown RBP32.18■■■□□ 2.74
COPE-209ENST00000599964 RAD54L2Q9Y4B4 1467 aa32.17■■■□□ 2.74
COPE-209ENST00000599964 CHIC1Q5VXU3 224 aa32.09■■■□□ 2.73
COPE-209ENST00000599964 ABCA10Q8WWZ4 1543 aa32.08■■■□□ 2.73
COPE-209ENST00000599964 WDR97A6NE52 1622 aa32.05■■■□□ 2.72
COPE-209ENST00000599964 ZNF608Q9ULD9 1512 aaPredicted RBP32.01■■■□□ 2.72
COPE-209ENST00000599964 TDRD9Q8NDG6 1382 aaKnown RBP31.97■■■□□ 2.71
COPE-209ENST00000599964 EIF4G3O43432 1585 aaKnown RBP31.97■■■□□ 2.71
COPE-209ENST00000599964 AQRO60306 1485 aaKnown RBP eCLIP31.93■■■□□ 2.71e-7■■■□□ 17
COPE-209ENST00000599964 ABCA5Q8WWZ7 1642 aa31.89■■■□□ 2.7
COPE-209ENST00000599964 GAPVD1Q14C86 1478 aa31.89■■■□□ 2.7
COPE-209ENST00000599964 KIF27Q86VH2 1401 aa31.88■■■□□ 2.69
COPE-209ENST00000599964 GRIN2BQ13224 1484 aa31.83■■■□□ 2.69
COPE-209ENST00000599964 PBRM1Q86U86 1689 aa31.79■■■□□ 2.68
COPE-209ENST00000599964 ERICH3Q5RHP9 1530 aa31.73■■■□□ 2.67
COPE-209ENST00000599964 MAGI1Q96QZ7 1491 aaPredicted RBP31.7■■■□□ 2.66
COPE-209ENST00000599964 SNAPC4Q5SXM2 1469 aa31.67■■■□□ 2.66
COPE-209ENST00000599964 EEA1Q15075 1411 aa31.66■■■□□ 2.66
COPE-209ENST00000599964 RUSC2Q8N2Y8 1516 aa31.64■■■□□ 2.66
COPE-209ENST00000599964 IGF1RP08069 1367 aa31.61■■■□□ 2.65
COPE-209ENST00000599964 CUL7Q14999 1698 aa31.57■■■□□ 2.65
COPE-209ENST00000599964 FHAD1B1AJZ9 1412 aa31.56■■■□□ 2.64
COPE-209ENST00000599964 ADAMTS12P58397 1594 aa31.56■■■□□ 2.64
COPE-209ENST00000599964 SYNJ2O15056 1496 aa31.55■■■□□ 2.64
COPE-209ENST00000599964 CHMP7Q8WUX9 453 aaPredicted RBP31.52■■■□□ 2.64
COPE-209ENST00000599964 FBLN2P98095 1184 aa31.51■■■□□ 2.63
COPE-209ENST00000599964 CSRNP3Q8WYN3 585 aa31.49■■■□□ 2.63
COPE-209ENST00000599964 FAM9AQ8IZU1 332 aaPredicted RBP31.47■■■□□ 2.63
COPE-209ENST00000599964 CARMIL1Q5VZK9 1371 aa31.46■■■□□ 2.63
COPE-209ENST00000599964 CHD1O14646 1710 aa31.46■■■□□ 2.63
COPE-209ENST00000599964 GRIN2AQ12879 1464 aa31.4■■■□□ 2.62
COPE-209ENST00000599964 RAPGEF2Q9Y4G8 1499 aa31.36■■■□□ 2.61
COPE-209ENST00000599964 PRXQ9BXM0 1461 aa31.34■■■□□ 2.61
COPE-209ENST00000599964 OSCARQ8IYS5 282 aa31.34■■■□□ 2.61
COPE-209ENST00000599964 KIF21BO75037 1637 aa31.24■■■□□ 2.59
COPE-209ENST00000599964 NUP160Q12769 1436 aa31.21■■■□□ 2.59
COPE-209ENST00000599964 CEP170Q5SW79 1584 aa31.19■■■□□ 2.58
COPE-209ENST00000599964 CLASP1Q7Z460 1538 aa31.12■■■□□ 2.57
COPE-209ENST00000599964 GOLGA3Q08378 1498 aa31.11■■■□□ 2.57
COPE-209ENST00000599964 KIAA0586Q9BVV6 1533 aa31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 225.5 ms