RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 NISCHQ9Y2I1 1504 aa21.89■■□□□ 1.09
SHKBP1-220ENST00000599716 ABCC9O60706 1549 aa20.24■□□□□ 0.83
SHKBP1-220ENST00000599716 DNAJC5BQ9UF47 199 aa19.87■□□□□ 0.77
SHKBP1-220ENST00000599716 CCDC180Q9P1Z9 1646 aa19.63■□□□□ 0.73
SHKBP1-220ENST00000599716 DNAJC5Q9H3Z4 198 aa19.05■□□□□ 0.64
SHKBP1-220ENST00000599716 RB1CC1Q8TDY2 1594 aa18.85■□□□□ 0.61
SHKBP1-220ENST00000599716 PABPN1Q86U42 306 aaKnown RBP eCLIP18.67■□□□□ 0.58
SHKBP1-220ENST00000599716 DCAF8L2P0C7V8 631 aa18.66■□□□□ 0.58
SHKBP1-220ENST00000599716 NACADO15069 1562 aa18.59■□□□□ 0.57
SHKBP1-220ENST00000599716 UNC13AQ9UPW8 1703 aa18.46■□□□□ 0.55
SHKBP1-220ENST00000599716 AEBP2Q6ZN18 517 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-220ENST00000599716 CECR2Q9BXF3 1484 aa18.39■□□□□ 0.53
SHKBP1-220ENST00000599716 BICRAQ9NZM4 1560 aa18.31■□□□□ 0.52
SHKBP1-220ENST00000599716 CC2D2AQ9P2K1 1620 aa18.22■□□□□ 0.51
SHKBP1-220ENST00000599716 MYO15BQ96JP2 1530 aa18.2■□□□□ 0.5
SHKBP1-220ENST00000599716 ZCCHC6Q5VYS8 1495 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-220ENST00000599716 SHROOM4Q9ULL8 1493 aa18.11■□□□□ 0.49
SHKBP1-220ENST00000599716 SCRIBQ14160 1630 aa18.03■□□□□ 0.48
SHKBP1-220ENST00000599716 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-220ENST00000599716 DCAF1Q9Y4B6 1507 aa17.97■□□□□ 0.47
SHKBP1-220ENST00000599716 CUX2O14529 1486 aa17.94■□□□□ 0.46
SHKBP1-220ENST00000599716 TRIM41Q8WV44 630 aa17.72■□□□□ 0.43
SHKBP1-220ENST00000599716 ERCC6Q03468 1493 aa17.59■□□□□ 0.41
SHKBP1-220ENST00000599716 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
SHKBP1-220ENST00000599716 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
SHKBP1-220ENST00000599716 ATAD2BQ9ULI0 1458 aa17.15■□□□□ 0.34
SHKBP1-220ENST00000599716 THOC2Q8NI27 1593 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-220ENST00000599716 SMARCA4P51532 1647 aa17.12■□□□□ 0.33
SHKBP1-220ENST00000599716 NESP48681 1621 aa17.1■□□□□ 0.33
SHKBP1-220ENST00000599716 SMARCA2P51531 1590 aa17.05■□□□□ 0.32
SHKBP1-220ENST00000599716 HMGXB3Q12766 1538 aa17.03■□□□□ 0.32
SHKBP1-220ENST00000599716 BAZ1BQ9UIG0 1483 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-220ENST00000599716 BAZ1AQ9NRL2 1556 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-220ENST00000599716 MROH2BQ7Z745 1585 aa16.93■□□□□ 0.3
SHKBP1-220ENST00000599716 OSCARQ8IYS5 282 aa16.91■□□□□ 0.3
SHKBP1-220ENST00000599716 PEG3Q9GZU2 1588 aa16.87■□□□□ 0.29
SHKBP1-220ENST00000599716 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
SHKBP1-220ENST00000599716 KIF21AQ7Z4S6 1674 aa16.84■□□□□ 0.29
SHKBP1-220ENST00000599716 PDS5BQ9NTI5 1447 aa16.83■□□□□ 0.28
SHKBP1-220ENST00000599716 WIZO95785 1651 aa16.75■□□□□ 0.27
SHKBP1-220ENST00000599716 RIMBP3CA6NJZ7 1639 aa16.74■□□□□ 0.27
SHKBP1-220ENST00000599716 RIMBP3BA6NNM3 1639 aa16.74■□□□□ 0.27
SHKBP1-220ENST00000599716 RIMBP3Q9UFD9 1639 aa16.74■□□□□ 0.27
SHKBP1-220ENST00000599716 MRC2Q9UBG0 1479 aa16.73■□□□□ 0.27
SHKBP1-220ENST00000599716 WDR62O43379 1518 aa16.71■□□□□ 0.27
SHKBP1-220ENST00000599716 TRHP20396 242 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-220ENST00000599716 CADPSQ9ULU8 1353 aa16.66■□□□□ 0.26
SHKBP1-220ENST00000599716 ARHGEF11O15085 1522 aa16.65■□□□□ 0.26
SHKBP1-220ENST00000599716 CYB5RLQ6IPT4 315 aa16.55■□□□□ 0.24
SHKBP1-220ENST00000599716 CEP164Q9UPV0 1460 aa16.53■□□□□ 0.24
SHKBP1-220ENST00000599716 FANCD2Q9BXW9 1451 aa16.52■□□□□ 0.23
SHKBP1-220ENST00000599716 RSF1Q96T23 1441 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-220ENST00000599716 CFTRP13569 1480 aa16.45■□□□□ 0.22
SHKBP1-220ENST00000599716 TOP2AP11388 1531 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-220ENST00000599716 URB2Q14146 1524 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-220ENST00000599716 ILDR1Q86SU0 546 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-220ENST00000599716 ARAP1Q96P48 1450 aa16.42■□□□□ 0.22
SHKBP1-220ENST00000599716 CCDC88BA6NC98 1476 aa16.29■□□□□ 0.2
SHKBP1-220ENST00000599716 PRDM2Q13029 1718 aa16.28■□□□□ 0.2
SHKBP1-220ENST00000599716 ZNF608Q9ULD9 1512 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-220ENST00000599716 TOPBP1Q92547 1522 aa16.19■□□□□ 0.18
SHKBP1-220ENST00000599716 IFT140Q96RY7 1462 aa16.18■□□□□ 0.18
SHKBP1-220ENST00000599716 EIF4G3O43432 1585 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-220ENST00000599716 AQRO60306 1485 aaKnown RBP eCLIP16.1■□□□□ 0.17
SHKBP1-220ENST00000599716 DNMBPQ6XZF7 1577 aa16.09■□□□□ 0.17
SHKBP1-220ENST00000599716 CHD1O14646 1710 aa16.07■□□□□ 0.16
SHKBP1-220ENST00000599716 TARBP1Q13395 1621 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-220ENST00000599716 FBLN2P98095 1184 aa16.04■□□□□ 0.16
SHKBP1-220ENST00000599716 POLA1P09884 1462 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-220ENST00000599716 RAD54L2Q9Y4B4 1467 aa16.03■□□□□ 0.16
SHKBP1-220ENST00000599716 ABCC8Q09428 1581 aa16.03■□□□□ 0.16
SHKBP1-220ENST00000599716 TDRD9Q8NDG6 1382 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-220ENST00000599716 CLASP1Q7Z460 1538 aa15.94■□□□□ 0.14
SHKBP1-220ENST00000599716 SOGA1O94964 1423 aa15.94■□□□□ 0.14
SHKBP1-220ENST00000599716 FGD5Q6ZNL6 1462 aa15.92■□□□□ 0.14
SHKBP1-220ENST00000599716 SNAPC4Q5SXM2 1469 aa15.91■□□□□ 0.14
SHKBP1-220ENST00000599716 CUX1P39880 1505 aa15.9■□□□□ 0.14
SHKBP1-220ENST00000599716 KDM4FA0A1W2PPD8 638 aa15.88■□□□□ 0.13
SHKBP1-220ENST00000599716 GAPVD1Q14C86 1478 aa15.87■□□□□ 0.13
SHKBP1-220ENST00000599716 SYNJ1O43426 1573 aa15.83■□□□□ 0.13
SHKBP1-220ENST00000599716 CHMP7Q8WUX9 453 aaPredicted RBP15.82■□□□□ 0.12
SHKBP1-220ENST00000599716 WDR97A6NE52 1622 aa15.8■□□□□ 0.12
SHKBP1-220ENST00000599716 GRIN2BQ13224 1484 aa15.78■□□□□ 0.12
SHKBP1-220ENST00000599716 SUPT5HO00267 1087 aaKnown RBP15.78■□□□□ 0.12
SHKBP1-220ENST00000599716 SENP3Q9H4L4 574 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-220ENST00000599716 PBRM1Q86U86 1689 aa15.77■□□□□ 0.12
SHKBP1-220ENST00000599716 MAGI1Q96QZ7 1491 aaPredicted RBP15.77■□□□□ 0.11
SHKBP1-220ENST00000599716 SYNJ2O15056 1496 aa15.75■□□□□ 0.11
SHKBP1-220ENST00000599716 ERCC6L2Q5T890 1561 aa15.73■□□□□ 0.11
SHKBP1-220ENST00000599716 ABCA5Q8WWZ7 1642 aa15.7■□□□□ 0.1
SHKBP1-220ENST00000599716 FBXO41Q8TF61 875 aa15.7■□□□□ 0.1
SHKBP1-220ENST00000599716 ABCA10Q8WWZ4 1543 aa15.68■□□□□ 0.1
SHKBP1-220ENST00000599716 KIF13AQ9H1H9 1805 aa15.66■□□□□ 0.1
SHKBP1-220ENST00000599716 HECW2Q9P2P5 1572 aa15.62■□□□□ 0.09
SHKBP1-220ENST00000599716 CEP170Q5SW79 1584 aa15.61■□□□□ 0.09
SHKBP1-220ENST00000599716 GRIN2AQ12879 1464 aa15.6■□□□□ 0.09
SHKBP1-220ENST00000599716 LMTK3Q96Q04 1460 aa15.6■□□□□ 0.09
SHKBP1-220ENST00000599716 ADAMTS12P58397 1594 aa15.6■□□□□ 0.09
SHKBP1-220ENST00000599716 WRNQ14191 1432 aaPredicted RBP eCLIP15.59■□□□□ 0.09
SHKBP1-220ENST00000599716 KDM6BO15054 1643 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms