RNA–Protein interactions for RNA: ENST00000599398.5

CCDC9-204, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-204ENST00000599398 NISCHQ9Y2I1 1504 aa55.33■■■■■ 6.45
CCDC9-204ENST00000599398 CCDC180Q9P1Z9 1646 aa49.34■■■■■ 5.49
CCDC9-204ENST00000599398 ABCC9O60706 1549 aa48.68■■■■■ 5.38
CCDC9-204ENST00000599398 RB1CC1Q8TDY2 1594 aa46.64■■■■■ 5.06
CCDC9-204ENST00000599398 DCAF8L2P0C7V8 631 aa46.52■■■■■ 5.04
CCDC9-204ENST00000599398 NACADO15069 1562 aa46.47■■■■■ 5.03
CCDC9-204ENST00000599398 MYO15BQ96JP2 1530 aa46.03■■■■■ 4.96
CCDC9-204ENST00000599398 ZCCHC6Q5VYS8 1495 aaKnown RBP46.01■■■■■ 4.96
CCDC9-204ENST00000599398 DCAF1Q9Y4B6 1507 aa45.71■■■■■ 4.91
CCDC9-204ENST00000599398 UNC13AQ9UPW8 1703 aa45.6■■■■■ 4.89
CCDC9-204ENST00000599398 PABPN1Q86U42 306 aaKnown RBP eCLIP45.45■■■■■ 4.87
CCDC9-204ENST00000599398 BICRAQ9NZM4 1560 aa45.2■■■■■ 4.83
CCDC9-204ENST00000599398 SCRIBQ14160 1630 aa45.07■■■■■ 4.81
CCDC9-204ENST00000599398 DNAJC5BQ9UF47 199 aa44.96■■■■■ 4.79
CCDC9-204ENST00000599398 SHROOM4Q9ULL8 1493 aa44.66■■■■■ 4.74
CCDC9-204ENST00000599398 EIF4G1Q04637 1599 aaKnown RBP44.07■■■■■ 4.65
CCDC9-204ENST00000599398 CC2D2AQ9P2K1 1620 aa43.99■■■■■ 4.63
CCDC9-204ENST00000599398 CECR2Q9BXF3 1484 aa43.76■■■■■ 4.6
CCDC9-204ENST00000599398 SMARCA4P51532 1647 aa43.03■■■■■ 4.48
CCDC9-204ENST00000599398 BAZ1AQ9NRL2 1556 aaPredicted RBP42.92■■■■■ 4.46
CCDC9-204ENST00000599398 NCAPD3P42695 1498 aa42.87■■■■■ 4.45
CCDC9-204ENST00000599398 ATAD2BQ9ULI0 1458 aa42.87■■■■■ 4.45
CCDC9-204ENST00000599398 SMARCA2P51531 1590 aa42.81■■■■■ 4.44
CCDC9-204ENST00000599398 MROH2BQ7Z745 1585 aa42.65■■■■■ 4.42
CCDC9-204ENST00000599398 HMGXB3Q12766 1538 aa42.64■■■■■ 4.42
CCDC9-204ENST00000599398 PEG3Q9GZU2 1588 aa42.56■■■■■ 4.4
CCDC9-204ENST00000599398 BAZ1BQ9UIG0 1483 aaKnown RBP42.54■■■■■ 4.4
CCDC9-204ENST00000599398 WIZO95785 1651 aa42.21■■■■■ 4.35
CCDC9-204ENST00000599398 RSF1Q96T23 1441 aaPredicted RBP42.03■■■■■ 4.32
CCDC9-204ENST00000599398 ERCC6Q03468 1493 aa42.01■■■■■ 4.32
CCDC9-204ENST00000599398 NESP48681 1621 aa42.01■■■■■ 4.32
CCDC9-204ENST00000599398 LAMC3Q9Y6N6 1575 aa41.82■■■■■ 4.29
CCDC9-204ENST00000599398 TOP2AP11388 1531 aaKnown RBP41.71■■■■■ 4.27
CCDC9-204ENST00000599398 CADPSQ9ULU8 1353 aa41.63■■■■■ 4.26
CCDC9-204ENST00000599398 CUX2O14529 1486 aa41.61■■■■■ 4.25
CCDC9-204ENST00000599398 PDS5BQ9NTI5 1447 aa41.57■■■■■ 4.25
CCDC9-204ENST00000599398 KIF21AQ7Z4S6 1674 aa41.52■■■■■ 4.24
CCDC9-204ENST00000599398 THOC2Q8NI27 1593 aaKnown RBP41.42■■■■■ 4.22
CCDC9-204ENST00000599398 CFTRP13569 1480 aa41.29■■■■■ 4.2
CCDC9-204ENST00000599398 CCDC88BA6NC98 1476 aa41.23■■■■■ 4.19
CCDC9-204ENST00000599398 FANCD2Q9BXW9 1451 aa41.18■■■■■ 4.18
CCDC9-204ENST00000599398 MRC2Q9UBG0 1479 aa41.16■■■■■ 4.18
CCDC9-204ENST00000599398 CEP164Q9UPV0 1460 aa41.16■■■■■ 4.18
CCDC9-204ENST00000599398 WDR62O43379 1518 aa41.02■■■■■ 4.16
CCDC9-204ENST00000599398 PRDM2Q13029 1718 aa41■■■■■ 4.15
CCDC9-204ENST00000599398 SUPT5HO00267 1087 aaKnown RBP40.83■■■■■ 4.13
CCDC9-204ENST00000599398 URB2Q14146 1524 aaKnown RBP40.77■■■■■ 4.12
CCDC9-204ENST00000599398 DNAJC5Q9H3Z4 198 aa40.75■■■■■ 4.11
CCDC9-204ENST00000599398 TOPBP1Q92547 1522 aa40.47■■■■■ 4.07
CCDC9-204ENST00000599398 ABCC8Q09428 1581 aa40.44■■■■■ 4.06
CCDC9-204ENST00000599398 DNMBPQ6XZF7 1577 aa40.4■■■■■ 4.06
CCDC9-204ENST00000599398 IFT140Q96RY7 1462 aa40.3■■■■■ 4.04
CCDC9-204ENST00000599398 ZNF608Q9ULD9 1512 aaPredicted RBP40.16■■■■■ 4.02
CCDC9-204ENST00000599398 POLA1P09884 1462 aaPredicted RBP40.11■■■■■ 4.01
CCDC9-204ENST00000599398 CUX1P39880 1505 aa40.04■■■■■ 4
CCDC9-204ENST00000599398 TARBP1Q13395 1621 aaKnown RBP40.04■■■■■ 4
CCDC9-204ENST00000599398 EIF4G3O43432 1585 aaKnown RBP39.99■■■■□ 3.99
CCDC9-204ENST00000599398 FGD5Q6ZNL6 1462 aa39.98■■■■□ 3.99
CCDC9-204ENST00000599398 RAD54L2Q9Y4B4 1467 aa39.96■■■■□ 3.99
CCDC9-204ENST00000599398 SOGA1O94964 1423 aa39.95■■■■□ 3.99
CCDC9-204ENST00000599398 AQRO60306 1485 aaKnown RBP eCLIP39.91■■■■□ 3.989e-8■■■■■ 27.6
CCDC9-204ENST00000599398 OSCARQ8IYS5 282 aa39.87■■■■□ 3.97
CCDC9-204ENST00000599398 TDRD9Q8NDG6 1382 aaKnown RBP39.79■■■■□ 3.96
CCDC9-204ENST00000599398 WDR97A6NE52 1622 aa39.68■■■■□ 3.94
CCDC9-204ENST00000599398 WRNQ14191 1432 aaPredicted RBP eCLIP39.67■■■■□ 3.94
CCDC9-204ENST00000599398 TOP2BQ02880 1626 aa39.6■■■■□ 3.93
CCDC9-204ENST00000599398 BIVM-ERCC5R4GMW8 1640 aa39.59■■■■□ 3.93
CCDC9-204ENST00000599398 SYNJ1O43426 1573 aa39.59■■■■□ 3.93
CCDC9-204ENST00000599398 CHD1O14646 1710 aa39.58■■■■□ 3.93
CCDC9-204ENST00000599398 FBLN2P98095 1184 aa39.58■■■■□ 3.93
CCDC9-204ENST00000599398 ABCA10Q8WWZ4 1543 aa39.54■■■■□ 3.92
CCDC9-204ENST00000599398 SNAPC4Q5SXM2 1469 aa39.53■■■■□ 3.92
CCDC9-204ENST00000599398 GRIN2BQ13224 1484 aa39.51■■■■□ 3.92
CCDC9-204ENST00000599398 GAPVD1Q14C86 1478 aa39.48■■■■□ 3.91
CCDC9-204ENST00000599398 PBRM1Q86U86 1689 aa39.44■■■■□ 3.9
CCDC9-204ENST00000599398 MAGI1Q96QZ7 1491 aaPredicted RBP39.43■■■■□ 3.9
CCDC9-204ENST00000599398 ABCA5Q8WWZ7 1642 aa39.42■■■■□ 3.9
CCDC9-204ENST00000599398 TRIM41Q8WV44 630 aa39.38■■■■□ 3.89
CCDC9-204ENST00000599398 CHMP7Q8WUX9 453 aaPredicted RBP39.37■■■■□ 3.89
CCDC9-204ENST00000599398 SYNJ2O15056 1496 aa39.3■■■■□ 3.88
CCDC9-204ENST00000599398 RIMBP3CA6NJZ7 1639 aa39.27■■■■□ 3.88
CCDC9-204ENST00000599398 RIMBP3BA6NNM3 1639 aa39.27■■■■□ 3.88
CCDC9-204ENST00000599398 RIMBP3Q9UFD9 1639 aa39.27■■■■□ 3.88
CCDC9-204ENST00000599398 ARHGEF11O15085 1522 aa39.21■■■■□ 3.87
CCDC9-204ENST00000599398 CLASP1Q7Z460 1538 aa39.09■■■■□ 3.85
CCDC9-204ENST00000599398 ADAMTS12P58397 1594 aa39.08■■■■□ 3.85
CCDC9-204ENST00000599398 ERICH3Q5RHP9 1530 aa39.06■■■■□ 3.84
CCDC9-204ENST00000599398 GRIN2AQ12879 1464 aa39.01■■■■□ 3.84
CCDC9-204ENST00000599398 FHAD1B1AJZ9 1412 aa39■■■■□ 3.83
CCDC9-204ENST00000599398 CYB5RLQ6IPT4 315 aa38.92■■■■□ 3.82
CCDC9-204ENST00000599398 KIF27Q86VH2 1401 aa38.87■■■■□ 3.81
CCDC9-204ENST00000599398 ARAP1Q96P48 1450 aa38.86■■■■□ 3.81
CCDC9-204ENST00000599398 CEP170Q5SW79 1584 aa38.83■■■■□ 3.81
CCDC9-204ENST00000599398 NUP160Q12769 1436 aa38.81■■■■□ 3.8
CCDC9-204ENST00000599398 IGF1RP08069 1367 aa38.73■■■■□ 3.79
CCDC9-204ENST00000599398 CUL7Q14999 1698 aa38.66■■■■□ 3.78
CCDC9-204ENST00000599398 SHROOM2Q13796 1616 aa38.56■■■■□ 3.76
CCDC9-204ENST00000599398 ERCC6L2Q5T890 1561 aa38.56■■■■□ 3.76
CCDC9-204ENST00000599398 CARMIL1Q5VZK9 1371 aa38.52■■■■□ 3.76
CCDC9-204ENST00000599398 RUSC2Q8N2Y8 1516 aa38.51■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms