RNA–Protein interactions for RNA: ENST00000598895.5

ZNF548-209, Transcript of zinc finger protein 548, humanhuman

TSL 4 BASIC

Gene ZNF548, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF548-209ENST00000598895 NISCHQ9Y2I1 1504 aa29.29■■■□□ 2.28
ZNF548-209ENST00000598895 CCDC180Q9P1Z9 1646 aa26.06■■□□□ 1.76
ZNF548-209ENST00000598895 ABCC9O60706 1549 aa25.62■■□□□ 1.69
ZNF548-209ENST00000598895 DCAF8L2P0C7V8 631 aa24.61■■□□□ 1.53
ZNF548-209ENST00000598895 RB1CC1Q8TDY2 1594 aa24.55■■□□□ 1.52
ZNF548-209ENST00000598895 NACADO15069 1562 aa24.48■■□□□ 1.51
ZNF548-209ENST00000598895 ZCCHC6Q5VYS8 1495 aaKnown RBP24.39■■□□□ 1.5
ZNF548-209ENST00000598895 MYO15BQ96JP2 1530 aa24.25■■□□□ 1.47
ZNF548-209ENST00000598895 DCAF1Q9Y4B6 1507 aa24.15■■□□□ 1.46
ZNF548-209ENST00000598895 UNC13AQ9UPW8 1703 aa24.09■■□□□ 1.45
ZNF548-209ENST00000598895 PABPN1Q86U42 306 aaKnown RBP eCLIP23.94■■□□□ 1.42
ZNF548-209ENST00000598895 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
ZNF548-209ENST00000598895 BICRAQ9NZM4 1560 aa23.83■■□□□ 1.41
ZNF548-209ENST00000598895 DNAJC5BQ9UF47 199 aa23.51■■□□□ 1.35
ZNF548-209ENST00000598895 SHROOM4Q9ULL8 1493 aa23.45■■□□□ 1.34
ZNF548-209ENST00000598895 EIF4G1Q04637 1599 aaKnown RBP23.2■■□□□ 1.3
ZNF548-209ENST00000598895 CC2D2AQ9P2K1 1620 aa23.15■■□□□ 1.3
ZNF548-209ENST00000598895 CECR2Q9BXF3 1484 aa22.97■■□□□ 1.27
ZNF548-209ENST00000598895 SMARCA4P51532 1647 aa22.77■■□□□ 1.24
ZNF548-209ENST00000598895 BAZ1AQ9NRL2 1556 aaPredicted RBP22.71■■□□□ 1.23
ZNF548-209ENST00000598895 MROH2BQ7Z745 1585 aa22.63■■□□□ 1.21
ZNF548-209ENST00000598895 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
ZNF548-209ENST00000598895 SMARCA2P51531 1590 aa22.58■■□□□ 1.2
ZNF548-209ENST00000598895 NCAPD3P42695 1498 aa22.57■■□□□ 1.2
ZNF548-209ENST00000598895 HMGXB3Q12766 1538 aa22.47■■□□□ 1.19
ZNF548-209ENST00000598895 PEG3Q9GZU2 1588 aa22.47■■□□□ 1.19
ZNF548-209ENST00000598895 BAZ1BQ9UIG0 1483 aaKnown RBP22.46■■□□□ 1.19
ZNF548-209ENST00000598895 WIZO95785 1651 aa22.42■■□□□ 1.18
ZNF548-209ENST00000598895 RSF1Q96T23 1441 aaPredicted RBP22.31■■□□□ 1.16
ZNF548-209ENST00000598895 NESP48681 1621 aa22.16■■□□□ 1.14
ZNF548-209ENST00000598895 TOP2AP11388 1531 aaKnown RBP22.11■■□□□ 1.13
ZNF548-209ENST00000598895 ERCC6Q03468 1493 aa22.05■■□□□ 1.12
ZNF548-209ENST00000598895 LAMC3Q9Y6N6 1575 aa22.02■■□□□ 1.12
ZNF548-209ENST00000598895 CADPSQ9ULU8 1353 aa21.93■■□□□ 1.1
ZNF548-209ENST00000598895 KIF21AQ7Z4S6 1674 aa21.91■■□□□ 1.1
ZNF548-209ENST00000598895 CCDC88BA6NC98 1476 aa21.86■■□□□ 1.09
ZNF548-209ENST00000598895 PDS5BQ9NTI5 1447 aa21.85■■□□□ 1.09
ZNF548-209ENST00000598895 SUPT5HO00267 1087 aaKnown RBP21.82■■□□□ 1.08
ZNF548-209ENST00000598895 THOC2Q8NI27 1593 aaKnown RBP21.8■■□□□ 1.08
ZNF548-209ENST00000598895 CFTRP13569 1480 aa21.79■■□□□ 1.08
ZNF548-209ENST00000598895 CUX2O14529 1486 aa21.76■■□□□ 1.07
ZNF548-209ENST00000598895 FANCD2Q9BXW9 1451 aa21.72■■□□□ 1.07
ZNF548-209ENST00000598895 CEP164Q9UPV0 1460 aa21.71■■□□□ 1.07
ZNF548-209ENST00000598895 PRDM2Q13029 1718 aa21.7■■□□□ 1.06
ZNF548-209ENST00000598895 MRC2Q9UBG0 1479 aa21.67■■□□□ 1.06
ZNF548-209ENST00000598895 WDR62O43379 1518 aa21.59■■□□□ 1.05
ZNF548-209ENST00000598895 URB2Q14146 1524 aaKnown RBP21.52■■□□□ 1.04
ZNF548-209ENST00000598895 TOPBP1Q92547 1522 aa21.38■■□□□ 1.01
ZNF548-209ENST00000598895 DNMBPQ6XZF7 1577 aa21.35■■□□□ 1.01
ZNF548-209ENST00000598895 ABCC8Q09428 1581 aa21.3■■□□□ 1
ZNF548-209ENST00000598895 CUX1P39880 1505 aa21.22■□□□□ 0.99
ZNF548-209ENST00000598895 IFT140Q96RY7 1462 aa21.21■□□□□ 0.99
ZNF548-209ENST00000598895 POLA1P09884 1462 aaPredicted RBP21.19■□□□□ 0.98
ZNF548-209ENST00000598895 ZNF608Q9ULD9 1512 aaPredicted RBP21.19■□□□□ 0.98
ZNF548-209ENST00000598895 FGD5Q6ZNL6 1462 aa21.16■□□□□ 0.98
ZNF548-209ENST00000598895 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
ZNF548-209ENST00000598895 RAD54L2Q9Y4B4 1467 aa21.14■□□□□ 0.98
ZNF548-209ENST00000598895 DNAJC5Q9H3Z4 198 aa21.13■□□□□ 0.97
ZNF548-209ENST00000598895 EIF4G3O43432 1585 aaKnown RBP21.11■□□□□ 0.97
ZNF548-209ENST00000598895 SOGA1O94964 1423 aa21.1■□□□□ 0.97
ZNF548-209ENST00000598895 AQRO60306 1485 aaKnown RBP eCLIP21.06■□□□□ 0.964e-10■■■■■ 60.8
ZNF548-209ENST00000598895 SYNJ1O43426 1573 aa21.05■□□□□ 0.96
ZNF548-209ENST00000598895 WRNQ14191 1432 aaPredicted RBP eCLIP21.04■□□□□ 0.96
ZNF548-209ENST00000598895 TDRD9Q8NDG6 1382 aaKnown RBP21.02■□□□□ 0.96
ZNF548-209ENST00000598895 BIVM-ERCC5R4GMW8 1640 aa21.02■□□□□ 0.96
ZNF548-209ENST00000598895 TOP2BQ02880 1626 aa21■□□□□ 0.95
ZNF548-209ENST00000598895 WDR97A6NE52 1622 aa21■□□□□ 0.95
ZNF548-209ENST00000598895 ABCA10Q8WWZ4 1543 aa20.89■□□□□ 0.94
ZNF548-209ENST00000598895 CHD1O14646 1710 aa20.89■□□□□ 0.93
ZNF548-209ENST00000598895 PBRM1Q86U86 1689 aa20.88■□□□□ 0.93
ZNF548-209ENST00000598895 OSCARQ8IYS5 282 aa20.87■□□□□ 0.93
ZNF548-209ENST00000598895 SNAPC4Q5SXM2 1469 aa20.87■□□□□ 0.93
ZNF548-209ENST00000598895 ABCA5Q8WWZ7 1642 aa20.86■□□□□ 0.93
ZNF548-209ENST00000598895 FBLN2P98095 1184 aa20.85■□□□□ 0.93
ZNF548-209ENST00000598895 GAPVD1Q14C86 1478 aa20.85■□□□□ 0.93
ZNF548-209ENST00000598895 GRIN2BQ13224 1484 aa20.84■□□□□ 0.93
ZNF548-209ENST00000598895 MAGI1Q96QZ7 1491 aaPredicted RBP20.77■□□□□ 0.92
ZNF548-209ENST00000598895 CHMP7Q8WUX9 453 aaPredicted RBP20.73■□□□□ 0.91
ZNF548-209ENST00000598895 SYNJ2O15056 1496 aa20.71■□□□□ 0.91
ZNF548-209ENST00000598895 ADAMTS12P58397 1594 aa20.67■□□□□ 0.9
ZNF548-209ENST00000598895 ERICH3Q5RHP9 1530 aa20.64■□□□□ 0.9
ZNF548-209ENST00000598895 RIMBP3CA6NJZ7 1639 aa20.61■□□□□ 0.89
ZNF548-209ENST00000598895 RIMBP3BA6NNM3 1639 aa20.61■□□□□ 0.89
ZNF548-209ENST00000598895 RIMBP3Q9UFD9 1639 aa20.61■□□□□ 0.89
ZNF548-209ENST00000598895 GRIN2AQ12879 1464 aa20.59■□□□□ 0.89
ZNF548-209ENST00000598895 FHAD1B1AJZ9 1412 aa20.59■□□□□ 0.89
ZNF548-209ENST00000598895 KIF27Q86VH2 1401 aa20.59■□□□□ 0.89
ZNF548-209ENST00000598895 CLASP1Q7Z460 1538 aa20.58■□□□□ 0.89
ZNF548-209ENST00000598895 ARHGEF11O15085 1522 aa20.57■□□□□ 0.88
ZNF548-209ENST00000598895 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
ZNF548-209ENST00000598895 CEP170Q5SW79 1584 aa20.53■□□□□ 0.88
ZNF548-209ENST00000598895 IGF1RP08069 1367 aa20.5■□□□□ 0.87
ZNF548-209ENST00000598895 CUL7Q14999 1698 aa20.48■□□□□ 0.87
ZNF548-209ENST00000598895 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
ZNF548-209ENST00000598895 NUP160Q12769 1436 aa20.46■□□□□ 0.87
ZNF548-209ENST00000598895 CYB5RLQ6IPT4 315 aa20.4■□□□□ 0.86
ZNF548-209ENST00000598895 ARAP1Q96P48 1450 aa20.4■□□□□ 0.86
ZNF548-209ENST00000598895 CARMIL1Q5VZK9 1371 aa20.39■□□□□ 0.85
ZNF548-209ENST00000598895 ERCC6L2Q5T890 1561 aa20.37■□□□□ 0.85
ZNF548-209ENST00000598895 SHROOM2Q13796 1616 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms