RNA–Protein interactions for RNA: ENST00000598580.1

GRAMD1A-209, Transcript of GRAM domain containing 1A, humanhuman

TSL 3

Gene GRAMD1A, Length 400 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRAMD1A-209ENST00000598580 NISCHQ9Y2I1 1504 aa27.84■■■□□ 2.05
GRAMD1A-209ENST00000598580 ABCC9O60706 1549 aa25.07■■□□□ 1.6
GRAMD1A-209ENST00000598580 CCDC180Q9P1Z9 1646 aa24.84■■□□□ 1.57
GRAMD1A-209ENST00000598580 DNAJC5BQ9UF47 199 aa23.76■■□□□ 1.39
GRAMD1A-209ENST00000598580 RB1CC1Q8TDY2 1594 aa23.71■■□□□ 1.39
GRAMD1A-209ENST00000598580 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.37
GRAMD1A-209ENST00000598580 NACADO15069 1562 aa23.57■■□□□ 1.36
GRAMD1A-209ENST00000598580 PABPN1Q86U42 306 aaKnown RBP eCLIP23.43■■□□□ 1.341e-6■■□□□ 12.4
GRAMD1A-209ENST00000598580 MYO15BQ96JP2 1530 aa23.23■■□□□ 1.31
GRAMD1A-209ENST00000598580 UNC13AQ9UPW8 1703 aa23.19■■□□□ 1.3
GRAMD1A-209ENST00000598580 BICRAQ9NZM4 1560 aa23.16■■□□□ 1.3
GRAMD1A-209ENST00000598580 ZCCHC6Q5VYS8 1495 aaKnown RBP23.05■■□□□ 1.28
GRAMD1A-209ENST00000598580 DCAF1Q9Y4B6 1507 aa22.94■■□□□ 1.26
GRAMD1A-209ENST00000598580 SCRIBQ14160 1630 aa22.74■■□□□ 1.23
GRAMD1A-209ENST00000598580 SHROOM4Q9ULL8 1493 aa22.67■■□□□ 1.22
GRAMD1A-209ENST00000598580 CC2D2AQ9P2K1 1620 aa22.59■■□□□ 1.21
GRAMD1A-209ENST00000598580 CECR2Q9BXF3 1484 aa22.56■■□□□ 1.2
GRAMD1A-209ENST00000598580 EIF4G1Q04637 1599 aaKnown RBP22.53■■□□□ 1.2
GRAMD1A-209ENST00000598580 NCAPD3P42695 1498 aa21.85■■□□□ 1.09
GRAMD1A-209ENST00000598580 ATAD2BQ9ULI0 1458 aa21.78■■□□□ 1.08
GRAMD1A-209ENST00000598580 DNAJC5Q9H3Z4 198 aa21.72■■□□□ 1.07
GRAMD1A-209ENST00000598580 SMARCA4P51532 1647 aa21.68■■□□□ 1.06
GRAMD1A-209ENST00000598580 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
GRAMD1A-209ENST00000598580 HMGXB3Q12766 1538 aa21.59■■□□□ 1.05
GRAMD1A-209ENST00000598580 NESP48681 1621 aa21.58■■□□□ 1.04
GRAMD1A-209ENST00000598580 ERCC6Q03468 1493 aa21.55■■□□□ 1.04
GRAMD1A-209ENST00000598580 BAZ1AQ9NRL2 1556 aaPredicted RBP21.54■■□□□ 1.04
GRAMD1A-209ENST00000598580 CUX2O14529 1486 aa21.53■■□□□ 1.04
GRAMD1A-209ENST00000598580 MROH2BQ7Z745 1585 aa21.51■■□□□ 1.03
GRAMD1A-209ENST00000598580 BAZ1BQ9UIG0 1483 aaKnown RBP21.5■■□□□ 1.03
GRAMD1A-209ENST00000598580 PEG3Q9GZU2 1588 aa21.47■■□□□ 1.03
GRAMD1A-209ENST00000598580 LAMC3Q9Y6N6 1575 aa21.25■□□□□ 0.99
GRAMD1A-209ENST00000598580 THOC2Q8NI27 1593 aaKnown RBP21.24■□□□□ 0.99
GRAMD1A-209ENST00000598580 WIZO95785 1651 aa21.19■□□□□ 0.98
GRAMD1A-209ENST00000598580 CADPSQ9ULU8 1353 aa21.19■□□□□ 0.98
GRAMD1A-209ENST00000598580 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
GRAMD1A-209ENST00000598580 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
GRAMD1A-209ENST00000598580 RSF1Q96T23 1441 aaPredicted RBP21.06■□□□□ 0.96
GRAMD1A-209ENST00000598580 MRC2Q9UBG0 1479 aa21.01■□□□□ 0.95
GRAMD1A-209ENST00000598580 WDR62O43379 1518 aa20.95■□□□□ 0.94
GRAMD1A-209ENST00000598580 CFTRP13569 1480 aa20.93■□□□□ 0.94
GRAMD1A-209ENST00000598580 FANCD2Q9BXW9 1451 aa20.92■□□□□ 0.94
GRAMD1A-209ENST00000598580 CEP164Q9UPV0 1460 aa20.88■□□□□ 0.93
GRAMD1A-209ENST00000598580 TOP2AP11388 1531 aaKnown RBP20.88■□□□□ 0.93
GRAMD1A-209ENST00000598580 URB2Q14146 1524 aaKnown RBP20.79■□□□□ 0.92
GRAMD1A-209ENST00000598580 CCDC88BA6NC98 1476 aa20.74■□□□□ 0.91
GRAMD1A-209ENST00000598580 TRIM41Q8WV44 630 aa20.71■□□□□ 0.91
GRAMD1A-209ENST00000598580 OSCARQ8IYS5 282 aa20.63■□□□□ 0.89
GRAMD1A-209ENST00000598580 ZNF608Q9ULD9 1512 aaPredicted RBP20.58■□□□□ 0.88
GRAMD1A-209ENST00000598580 TOPBP1Q92547 1522 aa20.53■□□□□ 0.88
GRAMD1A-209ENST00000598580 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
GRAMD1A-209ENST00000598580 PRDM2Q13029 1718 aa20.5■□□□□ 0.87
GRAMD1A-209ENST00000598580 DNMBPQ6XZF7 1577 aa20.38■□□□□ 0.85
GRAMD1A-209ENST00000598580 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.857e-7■■■■■ 34.4
GRAMD1A-209ENST00000598580 ABCC8Q09428 1581 aa20.38■□□□□ 0.85
GRAMD1A-209ENST00000598580 TARBP1Q13395 1621 aaKnown RBP20.33■□□□□ 0.84
GRAMD1A-209ENST00000598580 EIF4G3O43432 1585 aaKnown RBP20.32■□□□□ 0.84
GRAMD1A-209ENST00000598580 POLA1P09884 1462 aaPredicted RBP20.31■□□□□ 0.84
GRAMD1A-209ENST00000598580 RIMBP3CA6NJZ7 1639 aa20.31■□□□□ 0.84
GRAMD1A-209ENST00000598580 RIMBP3BA6NNM3 1639 aa20.31■□□□□ 0.84
GRAMD1A-209ENST00000598580 RIMBP3Q9UFD9 1639 aa20.31■□□□□ 0.84
GRAMD1A-209ENST00000598580 RAD54L2Q9Y4B4 1467 aa20.3■□□□□ 0.84
GRAMD1A-209ENST00000598580 TDRD9Q8NDG6 1382 aaKnown RBP20.26■□□□□ 0.83
GRAMD1A-209ENST00000598580 ARHGEF11O15085 1522 aa20.26■□□□□ 0.83
GRAMD1A-209ENST00000598580 SOGA1O94964 1423 aa20.24■□□□□ 0.83
GRAMD1A-209ENST00000598580 FBLN2P98095 1184 aa20.21■□□□□ 0.83
GRAMD1A-209ENST00000598580 CYB5RLQ6IPT4 315 aa20.19■□□□□ 0.82
GRAMD1A-209ENST00000598580 CUX1P39880 1505 aa20.18■□□□□ 0.82
GRAMD1A-209ENST00000598580 FGD5Q6ZNL6 1462 aa20.18■□□□□ 0.82
GRAMD1A-209ENST00000598580 CHD1O14646 1710 aa20.16■□□□□ 0.82
GRAMD1A-209ENST00000598580 SUPT5HO00267 1087 aaKnown RBP20.11■□□□□ 0.81
GRAMD1A-209ENST00000598580 SNAPC4Q5SXM2 1469 aa20.1■□□□□ 0.81
GRAMD1A-209ENST00000598580 ARAP1Q96P48 1450 aa20.1■□□□□ 0.81
GRAMD1A-209ENST00000598580 CHMP7Q8WUX9 453 aaPredicted RBP20.04■□□□□ 0.8
GRAMD1A-209ENST00000598580 GRIN2BQ13224 1484 aa20.01■□□□□ 0.79
GRAMD1A-209ENST00000598580 CLASP1Q7Z460 1538 aa20■□□□□ 0.79
GRAMD1A-209ENST00000598580 MAGI1Q96QZ7 1491 aaPredicted RBP19.99■□□□□ 0.79
GRAMD1A-209ENST00000598580 WDR97A6NE52 1622 aa19.98■□□□□ 0.79
GRAMD1A-209ENST00000598580 SYNJ2O15056 1496 aa19.96■□□□□ 0.79
GRAMD1A-209ENST00000598580 GAPVD1Q14C86 1478 aa19.96■□□□□ 0.79
GRAMD1A-209ENST00000598580 ABCA10Q8WWZ4 1543 aa19.93■□□□□ 0.78
GRAMD1A-209ENST00000598580 TRHP20396 242 aaPredicted RBP19.91■□□□□ 0.78
GRAMD1A-209ENST00000598580 SYNJ1O43426 1573 aa19.89■□□□□ 0.77
GRAMD1A-209ENST00000598580 ABCA5Q8WWZ7 1642 aa19.87■□□□□ 0.77
GRAMD1A-209ENST00000598580 PBRM1Q86U86 1689 aa19.84■□□□□ 0.77
GRAMD1A-209ENST00000598580 WRNQ14191 1432 aaPredicted RBP eCLIP19.84■□□□□ 0.77
GRAMD1A-209ENST00000598580 TOP2BQ02880 1626 aa19.77■□□□□ 0.76
GRAMD1A-209ENST00000598580 GRIN2AQ12879 1464 aa19.77■□□□□ 0.76
GRAMD1A-209ENST00000598580 ERCC6L2Q5T890 1561 aa19.77■□□□□ 0.76
GRAMD1A-209ENST00000598580 BIVM-ERCC5R4GMW8 1640 aa19.74■□□□□ 0.75
GRAMD1A-209ENST00000598580 NUP160Q12769 1436 aa19.74■□□□□ 0.75
GRAMD1A-209ENST00000598580 ADAMTS12P58397 1594 aa19.72■□□□□ 0.75
GRAMD1A-209ENST00000598580 CEP170Q5SW79 1584 aa19.72■□□□□ 0.75
GRAMD1A-209ENST00000598580 FHAD1B1AJZ9 1412 aa19.7■□□□□ 0.74
GRAMD1A-209ENST00000598580 ERICH3Q5RHP9 1530 aa19.63■□□□□ 0.73
GRAMD1A-209ENST00000598580 SHROOM2Q13796 1616 aa19.6■□□□□ 0.73
GRAMD1A-209ENST00000598580 JPH4Q96JJ6 628 aa19.58■□□□□ 0.72
GRAMD1A-209ENST00000598580 PRG4Q92954 1404 aaPredicted RBP19.56■□□□□ 0.72
GRAMD1A-209ENST00000598580 IGF1RP08069 1367 aa19.53■□□□□ 0.72
GRAMD1A-209ENST00000598580 RUSC2Q8N2Y8 1516 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms