RNA–Protein interactions for RNA: ENST00000596708.1

CHMP2A-202, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 3

Gene CHMP2A, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-202ENST00000596708 NISCHQ9Y2I1 1504 aa26.44■■□□□ 1.82
CHMP2A-202ENST00000596708 ABCC9O60706 1549 aa23.85■■□□□ 1.41
CHMP2A-202ENST00000596708 CCDC180Q9P1Z9 1646 aa23.79■■□□□ 1.4
CHMP2A-202ENST00000596708 RB1CC1Q8TDY2 1594 aa22.67■■□□□ 1.22
CHMP2A-202ENST00000596708 NACADO15069 1562 aa22.49■■□□□ 1.19
CHMP2A-202ENST00000596708 DCAF8L2P0C7V8 631 aa22.48■■□□□ 1.19
CHMP2A-202ENST00000596708 DNAJC5BQ9UF47 199 aa22.4■■□□□ 1.18
CHMP2A-202ENST00000596708 UNC13AQ9UPW8 1703 aa22.26■■□□□ 1.15
CHMP2A-202ENST00000596708 PABPN1Q86U42 306 aaKnown RBP eCLIP22.21■■□□□ 1.15
CHMP2A-202ENST00000596708 MYO15BQ96JP2 1530 aa22.1■■□□□ 1.13
CHMP2A-202ENST00000596708 BICRAQ9NZM4 1560 aa21.99■■□□□ 1.11
CHMP2A-202ENST00000596708 ZCCHC6Q5VYS8 1495 aaKnown RBP21.89■■□□□ 1.09
CHMP2A-202ENST00000596708 DCAF1Q9Y4B6 1507 aa21.8■■□□□ 1.08
CHMP2A-202ENST00000596708 SCRIBQ14160 1630 aa21.69■■□□□ 1.06
CHMP2A-202ENST00000596708 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.05
CHMP2A-202ENST00000596708 CC2D2AQ9P2K1 1620 aa21.55■■□□□ 1.04
CHMP2A-202ENST00000596708 CECR2Q9BXF3 1484 aa21.48■■□□□ 1.03
CHMP2A-202ENST00000596708 EIF4G1Q04637 1599 aaKnown RBP21.47■■□□□ 1.03
CHMP2A-202ENST00000596708 NCAPD3P42695 1498 aa20.73■□□□□ 0.91
CHMP2A-202ENST00000596708 ATAD2BQ9ULI0 1458 aa20.68■□□□□ 0.9
CHMP2A-202ENST00000596708 SMARCA4P51532 1647 aa20.67■□□□□ 0.9
CHMP2A-202ENST00000596708 SMARCA2P51531 1590 aa20.63■□□□□ 0.89
CHMP2A-202ENST00000596708 DNAJC5Q9H3Z4 198 aa20.62■□□□□ 0.89
CHMP2A-202ENST00000596708 ERCC6Q03468 1493 aa20.62■□□□□ 0.89
CHMP2A-202ENST00000596708 HMGXB3Q12766 1538 aa20.58■□□□□ 0.88
CHMP2A-202ENST00000596708 CUX2O14529 1486 aa20.55■□□□□ 0.88
CHMP2A-202ENST00000596708 BAZ1AQ9NRL2 1556 aaPredicted RBP20.55■□□□□ 0.88
CHMP2A-202ENST00000596708 BAZ1BQ9UIG0 1483 aaKnown RBP20.5■□□□□ 0.87
CHMP2A-202ENST00000596708 NESP48681 1621 aa20.47■□□□□ 0.87
CHMP2A-202ENST00000596708 PEG3Q9GZU2 1588 aa20.42■□□□□ 0.86
CHMP2A-202ENST00000596708 MROH2BQ7Z745 1585 aa20.38■□□□□ 0.85
CHMP2A-202ENST00000596708 LAMC3Q9Y6N6 1575 aa20.31■□□□□ 0.84
CHMP2A-202ENST00000596708 KIF21AQ7Z4S6 1674 aa20.26■□□□□ 0.83
CHMP2A-202ENST00000596708 THOC2Q8NI27 1593 aaKnown RBP20.26■□□□□ 0.83
CHMP2A-202ENST00000596708 WIZO95785 1651 aa20.19■□□□□ 0.82
CHMP2A-202ENST00000596708 PDS5BQ9NTI5 1447 aa20.19■□□□□ 0.82
CHMP2A-202ENST00000596708 CADPSQ9ULU8 1353 aa20.12■□□□□ 0.81
CHMP2A-202ENST00000596708 MRC2Q9UBG0 1479 aa20.01■□□□□ 0.79
CHMP2A-202ENST00000596708 WDR62O43379 1518 aa19.95■□□□□ 0.78
CHMP2A-202ENST00000596708 CEP164Q9UPV0 1460 aa19.93■□□□□ 0.78
CHMP2A-202ENST00000596708 RSF1Q96T23 1441 aaPredicted RBP19.93■□□□□ 0.78
CHMP2A-202ENST00000596708 FANCD2Q9BXW9 1451 aa19.9■□□□□ 0.78
CHMP2A-202ENST00000596708 TOP2AP11388 1531 aaKnown RBP19.88■□□□□ 0.77
CHMP2A-202ENST00000596708 CFTRP13569 1480 aa19.86■□□□□ 0.77
CHMP2A-202ENST00000596708 PRDM2Q13029 1718 aa19.79■□□□□ 0.76
CHMP2A-202ENST00000596708 TRIM41Q8WV44 630 aa19.76■□□□□ 0.75
CHMP2A-202ENST00000596708 URB2Q14146 1524 aaKnown RBP19.73■□□□□ 0.75
CHMP2A-202ENST00000596708 CCDC88BA6NC98 1476 aa19.67■□□□□ 0.74
CHMP2A-202ENST00000596708 OSCARQ8IYS5 282 aa19.65■□□□□ 0.74
CHMP2A-202ENST00000596708 IFT140Q96RY7 1462 aa19.53■□□□□ 0.72
CHMP2A-202ENST00000596708 TOPBP1Q92547 1522 aa19.52■□□□□ 0.72
CHMP2A-202ENST00000596708 ZNF608Q9ULD9 1512 aaPredicted RBP19.51■□□□□ 0.71
CHMP2A-202ENST00000596708 ABCC8Q09428 1581 aa19.49■□□□□ 0.71
CHMP2A-202ENST00000596708 DNMBPQ6XZF7 1577 aa19.44■□□□□ 0.7
CHMP2A-202ENST00000596708 EIF4G3O43432 1585 aaKnown RBP19.41■□□□□ 0.7
CHMP2A-202ENST00000596708 RIMBP3CA6NJZ7 1639 aa19.4■□□□□ 0.7
CHMP2A-202ENST00000596708 RIMBP3BA6NNM3 1639 aa19.4■□□□□ 0.7
CHMP2A-202ENST00000596708 RIMBP3Q9UFD9 1639 aa19.4■□□□□ 0.7
CHMP2A-202ENST00000596708 CHD1O14646 1710 aa19.35■□□□□ 0.69
CHMP2A-202ENST00000596708 TARBP1Q13395 1621 aaKnown RBP19.35■□□□□ 0.69
CHMP2A-202ENST00000596708 AQRO60306 1485 aaKnown RBP eCLIP19.34■□□□□ 0.696e-6■■□□□ 13.3
CHMP2A-202ENST00000596708 POLA1P09884 1462 aaPredicted RBP19.31■□□□□ 0.68
CHMP2A-202ENST00000596708 ARHGEF11O15085 1522 aa19.3■□□□□ 0.68
CHMP2A-202ENST00000596708 FBLN2P98095 1184 aa19.29■□□□□ 0.68
CHMP2A-202ENST00000596708 RAD54L2Q9Y4B4 1467 aa19.26■□□□□ 0.67
CHMP2A-202ENST00000596708 SOGA1O94964 1423 aa19.25■□□□□ 0.67
CHMP2A-202ENST00000596708 CYB5RLQ6IPT4 315 aa19.22■□□□□ 0.67
CHMP2A-202ENST00000596708 TDRD9Q8NDG6 1382 aaKnown RBP19.21■□□□□ 0.67
CHMP2A-202ENST00000596708 FGD5Q6ZNL6 1462 aa19.19■□□□□ 0.66
CHMP2A-202ENST00000596708 CUX1P39880 1505 aa19.15■□□□□ 0.66
CHMP2A-202ENST00000596708 WDR97A6NE52 1622 aa19.14■□□□□ 0.66
CHMP2A-202ENST00000596708 SNAPC4Q5SXM2 1469 aa19.13■□□□□ 0.65
CHMP2A-202ENST00000596708 SUPT5HO00267 1087 aaKnown RBP19.11■□□□□ 0.65
CHMP2A-202ENST00000596708 CHMP7Q8WUX9 453 aaPredicted RBP19.11■□□□□ 0.65
CHMP2A-202ENST00000596708 ARAP1Q96P48 1450 aa19.09■□□□□ 0.65
CHMP2A-202ENST00000596708 GRIN2BQ13224 1484 aa19.07■□□□□ 0.64
CHMP2A-202ENST00000596708 PBRM1Q86U86 1689 aa19.06■□□□□ 0.64
CHMP2A-202ENST00000596708 MAGI1Q96QZ7 1491 aaPredicted RBP19.06■□□□□ 0.64
CHMP2A-202ENST00000596708 SYNJ1O43426 1573 aa19.06■□□□□ 0.64
CHMP2A-202ENST00000596708 TRHP20396 242 aaPredicted RBP19.05■□□□□ 0.64
CHMP2A-202ENST00000596708 CLASP1Q7Z460 1538 aa19.02■□□□□ 0.64
CHMP2A-202ENST00000596708 SYNJ2O15056 1496 aa19■□□□□ 0.63
CHMP2A-202ENST00000596708 GAPVD1Q14C86 1478 aa19■□□□□ 0.63
CHMP2A-202ENST00000596708 ABCA10Q8WWZ4 1543 aa18.95■□□□□ 0.62
CHMP2A-202ENST00000596708 ABCA5Q8WWZ7 1642 aa18.94■□□□□ 0.62
CHMP2A-202ENST00000596708 WRNQ14191 1432 aaPredicted RBP eCLIP18.88■□□□□ 0.61
CHMP2A-202ENST00000596708 BIVM-ERCC5R4GMW8 1640 aa18.86■□□□□ 0.61
CHMP2A-202ENST00000596708 TOP2BQ02880 1626 aa18.85■□□□□ 0.61
CHMP2A-202ENST00000596708 GRIN2AQ12879 1464 aa18.82■□□□□ 0.6
CHMP2A-202ENST00000596708 ADAMTS12P58397 1594 aa18.8■□□□□ 0.6
CHMP2A-202ENST00000596708 CEP170Q5SW79 1584 aa18.76■□□□□ 0.59
CHMP2A-202ENST00000596708 ERCC6L2Q5T890 1561 aa18.75■□□□□ 0.59
CHMP2A-202ENST00000596708 FHAD1B1AJZ9 1412 aa18.74■□□□□ 0.59
CHMP2A-202ENST00000596708 NUP160Q12769 1436 aa18.73■□□□□ 0.59
CHMP2A-202ENST00000596708 ERICH3Q5RHP9 1530 aa18.72■□□□□ 0.59
CHMP2A-202ENST00000596708 SHROOM2Q13796 1616 aa18.68■□□□□ 0.58
CHMP2A-202ENST00000596708 PRG4Q92954 1404 aaPredicted RBP18.6■□□□□ 0.57
CHMP2A-202ENST00000596708 JPH4Q96JJ6 628 aa18.6■□□□□ 0.57
CHMP2A-202ENST00000596708 AEBP2Q6ZN18 517 aaPredicted RBP18.56■□□□□ 0.56
CHMP2A-202ENST00000596708 KIF13AQ9H1H9 1805 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms