RNA–Protein interactions for RNA: ENST00000596399.1

LIM2-202, Transcript of lens intrinsic membrane protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIM2, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2-202ENST00000596399 NISCHQ9Y2I1 1504 aa40.38■■■■■ 4.06
LIM2-202ENST00000596399 ABCC9O60706 1549 aa36.31■■■■□ 3.4
LIM2-202ENST00000596399 CCDC180Q9P1Z9 1646 aa36.14■■■■□ 3.38
LIM2-202ENST00000596399 RB1CC1Q8TDY2 1594 aa34.44■■■■□ 3.1
LIM2-202ENST00000596399 DCAF8L2P0C7V8 631 aa34.21■■■■□ 3.07
LIM2-202ENST00000596399 NACADO15069 1562 aa34.19■■■■□ 3.06
LIM2-202ENST00000596399 DNAJC5BQ9UF47 199 aa34.14■■■■□ 3.06
LIM2-202ENST00000596399 PABPN1Q86U42 306 aaKnown RBP eCLIP33.86■■■■□ 3.01
LIM2-202ENST00000596399 UNC13AQ9UPW8 1703 aa33.73■■■□□ 2.99
LIM2-202ENST00000596399 MYO15BQ96JP2 1530 aa33.66■■■□□ 2.98
LIM2-202ENST00000596399 BICRAQ9NZM4 1560 aa33.52■■■□□ 2.96
LIM2-202ENST00000596399 ZCCHC6Q5VYS8 1495 aaKnown RBP33.45■■■□□ 2.95
LIM2-202ENST00000596399 DCAF1Q9Y4B6 1507 aa33.26■■■□□ 2.91
LIM2-202ENST00000596399 SCRIBQ14160 1630 aa33.07■■■□□ 2.88
LIM2-202ENST00000596399 SHROOM4Q9ULL8 1493 aa32.88■■■□□ 2.85
LIM2-202ENST00000596399 CC2D2AQ9P2K1 1620 aa32.75■■■□□ 2.83
LIM2-202ENST00000596399 EIF4G1Q04637 1599 aaKnown RBP32.66■■■□□ 2.82
LIM2-202ENST00000596399 CECR2Q9BXF3 1484 aa32.66■■■□□ 2.82
LIM2-202ENST00000596399 NCAPD3P42695 1498 aa31.59■■■□□ 2.65
LIM2-202ENST00000596399 ATAD2BQ9ULI0 1458 aa31.53■■■□□ 2.64
LIM2-202ENST00000596399 SMARCA4P51532 1647 aa31.49■■■□□ 2.63
LIM2-202ENST00000596399 SMARCA2P51531 1590 aa31.39■■■□□ 2.61
LIM2-202ENST00000596399 HMGXB3Q12766 1538 aa31.34■■■□□ 2.61
LIM2-202ENST00000596399 BAZ1AQ9NRL2 1556 aaPredicted RBP31.3■■■□□ 2.6
LIM2-202ENST00000596399 ERCC6Q03468 1493 aa31.28■■■□□ 2.6
LIM2-202ENST00000596399 DNAJC5Q9H3Z4 198 aa31.24■■■□□ 2.59
LIM2-202ENST00000596399 NESP48681 1621 aa31.22■■■□□ 2.59
LIM2-202ENST00000596399 BAZ1BQ9UIG0 1483 aaKnown RBP31.21■■■□□ 2.59
LIM2-202ENST00000596399 CUX2O14529 1486 aa31.17■■■□□ 2.58
LIM2-202ENST00000596399 MROH2BQ7Z745 1585 aa31.17■■■□□ 2.58
LIM2-202ENST00000596399 PEG3Q9GZU2 1588 aa31.13■■■□□ 2.57
LIM2-202ENST00000596399 LAMC3Q9Y6N6 1575 aa30.86■■■□□ 2.53
LIM2-202ENST00000596399 THOC2Q8NI27 1593 aaKnown RBP30.82■■■□□ 2.52
LIM2-202ENST00000596399 WIZO95785 1651 aa30.8■■■□□ 2.52
LIM2-202ENST00000596399 KIF21AQ7Z4S6 1674 aa30.76■■■□□ 2.51
LIM2-202ENST00000596399 PDS5BQ9NTI5 1447 aa30.69■■■□□ 2.5
LIM2-202ENST00000596399 CADPSQ9ULU8 1353 aa30.66■■■□□ 2.5
LIM2-202ENST00000596399 RSF1Q96T23 1441 aaPredicted RBP30.51■■■□□ 2.47
LIM2-202ENST00000596399 MRC2Q9UBG0 1479 aa30.45■■■□□ 2.47
LIM2-202ENST00000596399 WDR62O43379 1518 aa30.37■■■□□ 2.45
LIM2-202ENST00000596399 TOP2AP11388 1531 aaKnown RBP30.33■■■□□ 2.45
LIM2-202ENST00000596399 FANCD2Q9BXW9 1451 aa30.32■■■□□ 2.44
LIM2-202ENST00000596399 CEP164Q9UPV0 1460 aa30.32■■■□□ 2.44
LIM2-202ENST00000596399 CFTRP13569 1480 aa30.31■■■□□ 2.44
LIM2-202ENST00000596399 URB2Q14146 1524 aaKnown RBP30.11■■■□□ 2.41
LIM2-202ENST00000596399 CCDC88BA6NC98 1476 aa30.06■■■□□ 2.4
LIM2-202ENST00000596399 TRIM41Q8WV44 630 aa29.95■■■□□ 2.39
LIM2-202ENST00000596399 PRDM2Q13029 1718 aa29.93■■■□□ 2.38
LIM2-202ENST00000596399 OSCARQ8IYS5 282 aa29.81■■■□□ 2.36
LIM2-202ENST00000596399 ZNF608Q9ULD9 1512 aaPredicted RBP29.76■■■□□ 2.36
LIM2-202ENST00000596399 TOPBP1Q92547 1522 aa29.76■■■□□ 2.35
LIM2-202ENST00000596399 IFT140Q96RY7 1462 aa29.71■■■□□ 2.35
LIM2-202ENST00000596399 DNMBPQ6XZF7 1577 aa29.61■■■□□ 2.33
LIM2-202ENST00000596399 ABCC8Q09428 1581 aa29.59■■■□□ 2.33
LIM2-202ENST00000596399 EIF4G3O43432 1585 aaKnown RBP29.54■■■□□ 2.32
LIM2-202ENST00000596399 AQRO60306 1485 aaKnown RBP eCLIP29.49■■■□□ 2.31
LIM2-202ENST00000596399 TARBP1Q13395 1621 aaKnown RBP29.49■■■□□ 2.31
LIM2-202ENST00000596399 POLA1P09884 1462 aaPredicted RBP29.45■■■□□ 2.31
LIM2-202ENST00000596399 RIMBP3CA6NJZ7 1639 aa29.44■■■□□ 2.3
LIM2-202ENST00000596399 RIMBP3BA6NNM3 1639 aa29.44■■■□□ 2.3
LIM2-202ENST00000596399 RIMBP3Q9UFD9 1639 aa29.44■■■□□ 2.3
LIM2-202ENST00000596399 RAD54L2Q9Y4B4 1467 aa29.41■■■□□ 2.3
LIM2-202ENST00000596399 ARHGEF11O15085 1522 aa29.34■■■□□ 2.29
LIM2-202ENST00000596399 CHD1O14646 1710 aa29.34■■■□□ 2.29
LIM2-202ENST00000596399 SOGA1O94964 1423 aa29.32■■■□□ 2.28
LIM2-202ENST00000596399 TDRD9Q8NDG6 1382 aaKnown RBP29.32■■■□□ 2.28
LIM2-202ENST00000596399 FBLN2P98095 1184 aa29.31■■■□□ 2.28
LIM2-202ENST00000596399 FGD5Q6ZNL6 1462 aa29.28■■■□□ 2.28
LIM2-202ENST00000596399 CUX1P39880 1505 aa29.27■■■□□ 2.28
LIM2-202ENST00000596399 SUPT5HO00267 1087 aaKnown RBP29.24■■■□□ 2.27
LIM2-202ENST00000596399 CYB5RLQ6IPT4 315 aa29.18■■■□□ 2.26
LIM2-202ENST00000596399 SNAPC4Q5SXM2 1469 aa29.16■■■□□ 2.26
LIM2-202ENST00000596399 ARAP1Q96P48 1450 aa29.07■■■□□ 2.24
LIM2-202ENST00000596399 WDR97A6NE52 1622 aa29.05■■■□□ 2.24
LIM2-202ENST00000596399 CHMP7Q8WUX9 453 aaPredicted RBP29.04■■■□□ 2.24
LIM2-202ENST00000596399 GRIN2BQ13224 1484 aa29.03■■■□□ 2.24
LIM2-202ENST00000596399 MAGI1Q96QZ7 1491 aaPredicted RBP29■■■□□ 2.23
LIM2-202ENST00000596399 CLASP1Q7Z460 1538 aa28.97■■■□□ 2.23
LIM2-202ENST00000596399 GAPVD1Q14C86 1478 aa28.95■■■□□ 2.22
LIM2-202ENST00000596399 PBRM1Q86U86 1689 aa28.93■■■□□ 2.22
LIM2-202ENST00000596399 SYNJ2O15056 1496 aa28.93■■■□□ 2.22
LIM2-202ENST00000596399 SYNJ1O43426 1573 aa28.92■■■□□ 2.22
LIM2-202ENST00000596399 ABCA10Q8WWZ4 1543 aa28.9■■■□□ 2.22
LIM2-202ENST00000596399 ABCA5Q8WWZ7 1642 aa28.87■■■□□ 2.21
LIM2-202ENST00000596399 TRHP20396 242 aaPredicted RBP28.85■■■□□ 2.21
LIM2-202ENST00000596399 WRNQ14191 1432 aaPredicted RBP eCLIP28.79■■■□□ 2.2
LIM2-202ENST00000596399 TOP2BQ02880 1626 aa28.75■■■□□ 2.19
LIM2-202ENST00000596399 BIVM-ERCC5R4GMW8 1640 aa28.74■■■□□ 2.19
LIM2-202ENST00000596399 GRIN2AQ12879 1464 aa28.67■■■□□ 2.18
LIM2-202ENST00000596399 ADAMTS12P58397 1594 aa28.66■■■□□ 2.18
LIM2-202ENST00000596399 ERCC6L2Q5T890 1561 aa28.62■■■□□ 2.17
LIM2-202ENST00000596399 CEP170Q5SW79 1584 aa28.61■■■□□ 2.17
LIM2-202ENST00000596399 NUP160Q12769 1436 aa28.57■■■□□ 2.16
LIM2-202ENST00000596399 FHAD1B1AJZ9 1412 aa28.56■■■□□ 2.16
LIM2-202ENST00000596399 ERICH3Q5RHP9 1530 aa28.52■■■□□ 2.16
LIM2-202ENST00000596399 SHROOM2Q13796 1616 aa28.43■■■□□ 2.14
LIM2-202ENST00000596399 PRG4Q92954 1404 aaPredicted RBP28.34■■■□□ 2.13
LIM2-202ENST00000596399 JPH4Q96JJ6 628 aa28.31■■■□□ 2.12
LIM2-202ENST00000596399 RUSC2Q8N2Y8 1516 aa28.25■■■□□ 2.11
LIM2-202ENST00000596399 IGF1RP08069 1367 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms