RNA–Protein interactions for RNA: ENST00000594387.1

IRF3-208, Transcript of interferon regulatory factor 3, humanhuman

TSL 3

Gene IRF3, Length 800 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-208ENST00000594387 NISCHQ9Y2I1 1504 aa42.27■■■■■ 4.36
IRF3-208ENST00000594387 CCDC180Q9P1Z9 1646 aa37.79■■■■□ 3.64
IRF3-208ENST00000594387 ABCC9O60706 1549 aa37.15■■■■□ 3.54
IRF3-208ENST00000594387 RB1CC1Q8TDY2 1594 aa35.7■■■■□ 3.31
IRF3-208ENST00000594387 DCAF8L2P0C7V8 631 aa35.61■■■■□ 3.29
IRF3-208ENST00000594387 NACADO15069 1562 aa35.57■■■■□ 3.28
IRF3-208ENST00000594387 MYO15BQ96JP2 1530 aa35.21■■■■□ 3.23
IRF3-208ENST00000594387 ZCCHC6Q5VYS8 1495 aaKnown RBP35.12■■■■□ 3.21
IRF3-208ENST00000594387 DCAF1Q9Y4B6 1507 aa34.96■■■■□ 3.19
IRF3-208ENST00000594387 UNC13AQ9UPW8 1703 aa34.91■■■■□ 3.18
IRF3-208ENST00000594387 PABPN1Q86U42 306 aaKnown RBP eCLIP34.66■■■■□ 3.14
IRF3-208ENST00000594387 BICRAQ9NZM4 1560 aa34.49■■■■□ 3.11
IRF3-208ENST00000594387 SCRIBQ14160 1630 aa34.43■■■■□ 3.1
IRF3-208ENST00000594387 DNAJC5BQ9UF47 199 aa34.21■■■■□ 3.07
IRF3-208ENST00000594387 SHROOM4Q9ULL8 1493 aa34.18■■■■□ 3.06
IRF3-208ENST00000594387 EIF4G1Q04637 1599 aaKnown RBP33.67■■■□□ 2.98
IRF3-208ENST00000594387 CC2D2AQ9P2K1 1620 aa33.62■■■□□ 2.97
IRF3-208ENST00000594387 CECR2Q9BXF3 1484 aa33.42■■■□□ 2.94
IRF3-208ENST00000594387 SMARCA4P51532 1647 aa32.89■■■□□ 2.86
IRF3-208ENST00000594387 BAZ1AQ9NRL2 1556 aaPredicted RBP32.84■■■□□ 2.85
IRF3-208ENST00000594387 SMARCA2P51531 1590 aa32.76■■■□□ 2.84
IRF3-208ENST00000594387 NCAPD3P42695 1498 aa32.75■■■□□ 2.83
IRF3-208ENST00000594387 ATAD2BQ9ULI0 1458 aa32.73■■■□□ 2.83
IRF3-208ENST00000594387 HMGXB3Q12766 1538 aa32.6■■■□□ 2.81
IRF3-208ENST00000594387 MROH2BQ7Z745 1585 aa32.54■■■□□ 2.8
IRF3-208ENST00000594387 PEG3Q9GZU2 1588 aa32.53■■■□□ 2.8
IRF3-208ENST00000594387 BAZ1BQ9UIG0 1483 aaKnown RBP32.52■■■□□ 2.8
IRF3-208ENST00000594387 WIZO95785 1651 aa32.26■■■□□ 2.75
IRF3-208ENST00000594387 ERCC6Q03468 1493 aa32.13■■■□□ 2.73
IRF3-208ENST00000594387 RSF1Q96T23 1441 aaPredicted RBP32.07■■■□□ 2.72
IRF3-208ENST00000594387 NESP48681 1621 aa32.03■■■□□ 2.72
IRF3-208ENST00000594387 LAMC3Q9Y6N6 1575 aa32.01■■■□□ 2.71
IRF3-208ENST00000594387 TOP2AP11388 1531 aaKnown RBP31.87■■■□□ 2.69
IRF3-208ENST00000594387 CUX2O14529 1486 aa31.82■■■□□ 2.68
IRF3-208ENST00000594387 PDS5BQ9NTI5 1447 aa31.82■■■□□ 2.68
IRF3-208ENST00000594387 CADPSQ9ULU8 1353 aa31.81■■■□□ 2.68
IRF3-208ENST00000594387 KIF21AQ7Z4S6 1674 aa31.76■■■□□ 2.67
IRF3-208ENST00000594387 THOC2Q8NI27 1593 aaKnown RBP31.62■■■□□ 2.65
IRF3-208ENST00000594387 CFTRP13569 1480 aa31.53■■■□□ 2.64
IRF3-208ENST00000594387 CCDC88BA6NC98 1476 aa31.48■■■□□ 2.63
IRF3-208ENST00000594387 PRDM2Q13029 1718 aa31.48■■■□□ 2.63
IRF3-208ENST00000594387 CEP164Q9UPV0 1460 aa31.47■■■□□ 2.63
IRF3-208ENST00000594387 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
IRF3-208ENST00000594387 MRC2Q9UBG0 1479 aa31.46■■■□□ 2.63
IRF3-208ENST00000594387 WDR62O43379 1518 aa31.33■■■□□ 2.61
IRF3-208ENST00000594387 SUPT5HO00267 1087 aaKnown RBP31.22■■■□□ 2.59
IRF3-208ENST00000594387 DNAJC5Q9H3Z4 198 aa31.13■■■□□ 2.57
IRF3-208ENST00000594387 URB2Q14146 1524 aaKnown RBP31.1■■■□□ 2.57
IRF3-208ENST00000594387 ABCC8Q09428 1581 aa31■■■□□ 2.55
IRF3-208ENST00000594387 TOPBP1Q92547 1522 aa30.92■■■□□ 2.54
IRF3-208ENST00000594387 DNMBPQ6XZF7 1577 aa30.89■■■□□ 2.54
IRF3-208ENST00000594387 IFT140Q96RY7 1462 aa30.81■■■□□ 2.52
IRF3-208ENST00000594387 ZNF608Q9ULD9 1512 aaPredicted RBP30.62■■■□□ 2.49
IRF3-208ENST00000594387 POLA1P09884 1462 aaPredicted RBP30.61■■■□□ 2.49
IRF3-208ENST00000594387 TARBP1Q13395 1621 aaKnown RBP30.58■■■□□ 2.49
IRF3-208ENST00000594387 EIF4G3O43432 1585 aaKnown RBP30.56■■■□□ 2.48
IRF3-208ENST00000594387 CUX1P39880 1505 aa30.55■■■□□ 2.48
IRF3-208ENST00000594387 SOGA1O94964 1423 aa30.55■■■□□ 2.48
IRF3-208ENST00000594387 FGD5Q6ZNL6 1462 aa30.53■■■□□ 2.48
IRF3-208ENST00000594387 OSCARQ8IYS5 282 aa30.53■■■□□ 2.48
IRF3-208ENST00000594387 RAD54L2Q9Y4B4 1467 aa30.49■■■□□ 2.47
IRF3-208ENST00000594387 AQRO60306 1485 aaKnown RBP eCLIP30.45■■■□□ 2.472e-9■■■■□ 26.5
IRF3-208ENST00000594387 WDR97A6NE52 1622 aa30.4■■■□□ 2.46
IRF3-208ENST00000594387 TDRD9Q8NDG6 1382 aaKnown RBP30.37■■■□□ 2.45
IRF3-208ENST00000594387 WRNQ14191 1432 aaPredicted RBP eCLIP30.32■■■□□ 2.44
IRF3-208ENST00000594387 CHD1O14646 1710 aa30.3■■■□□ 2.44
IRF3-208ENST00000594387 BIVM-ERCC5R4GMW8 1640 aa30.3■■■□□ 2.44
IRF3-208ENST00000594387 TOP2BQ02880 1626 aa30.29■■■□□ 2.44
IRF3-208ENST00000594387 FBLN2P98095 1184 aa30.28■■■□□ 2.44
IRF3-208ENST00000594387 SYNJ1O43426 1573 aa30.22■■■□□ 2.43
IRF3-208ENST00000594387 PBRM1Q86U86 1689 aa30.21■■■□□ 2.43
IRF3-208ENST00000594387 GRIN2BQ13224 1484 aa30.21■■■□□ 2.43
IRF3-208ENST00000594387 ABCA10Q8WWZ4 1543 aa30.21■■■□□ 2.43
IRF3-208ENST00000594387 GAPVD1Q14C86 1478 aa30.19■■■□□ 2.42
IRF3-208ENST00000594387 SNAPC4Q5SXM2 1469 aa30.17■■■□□ 2.42
IRF3-208ENST00000594387 MAGI1Q96QZ7 1491 aaPredicted RBP30.16■■■□□ 2.42
IRF3-208ENST00000594387 CHMP7Q8WUX9 453 aaPredicted RBP30.14■■■□□ 2.42
IRF3-208ENST00000594387 ABCA5Q8WWZ7 1642 aa30.11■■■□□ 2.41
IRF3-208ENST00000594387 TRIM41Q8WV44 630 aa30.08■■■□□ 2.41
IRF3-208ENST00000594387 SYNJ2O15056 1496 aa30.04■■■□□ 2.4
IRF3-208ENST00000594387 RIMBP3CA6NJZ7 1639 aa30.01■■■□□ 2.39
IRF3-208ENST00000594387 RIMBP3BA6NNM3 1639 aa30.01■■■□□ 2.39
IRF3-208ENST00000594387 RIMBP3Q9UFD9 1639 aa30.01■■■□□ 2.39
IRF3-208ENST00000594387 ARHGEF11O15085 1522 aa29.94■■■□□ 2.38
IRF3-208ENST00000594387 ERICH3Q5RHP9 1530 aa29.88■■■□□ 2.37
IRF3-208ENST00000594387 ADAMTS12P58397 1594 aa29.85■■■□□ 2.37
IRF3-208ENST00000594387 CLASP1Q7Z460 1538 aa29.83■■■□□ 2.37
IRF3-208ENST00000594387 FHAD1B1AJZ9 1412 aa29.81■■■□□ 2.36
IRF3-208ENST00000594387 GRIN2AQ12879 1464 aa29.8■■■□□ 2.36
IRF3-208ENST00000594387 CYB5RLQ6IPT4 315 aa29.75■■■□□ 2.35
IRF3-208ENST00000594387 KIF27Q86VH2 1401 aa29.74■■■□□ 2.35
IRF3-208ENST00000594387 ARAP1Q96P48 1450 aa29.64■■■□□ 2.34
IRF3-208ENST00000594387 CEP170Q5SW79 1584 aa29.64■■■□□ 2.33
IRF3-208ENST00000594387 NUP160Q12769 1436 aa29.63■■■□□ 2.33
IRF3-208ENST00000594387 CUL7Q14999 1698 aa29.63■■■□□ 2.33
IRF3-208ENST00000594387 IGF1RP08069 1367 aa29.57■■■□□ 2.32
IRF3-208ENST00000594387 SHROOM2Q13796 1616 aa29.48■■■□□ 2.31
IRF3-208ENST00000594387 CARMIL1Q5VZK9 1371 aa29.45■■■□□ 2.31
IRF3-208ENST00000594387 JPH4Q96JJ6 628 aa29.42■■■□□ 2.3
IRF3-208ENST00000594387 RUSC2Q8N2Y8 1516 aa29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms