RNA–Protein interactions for RNA: ENST00000592883.5

RFX2-223, Transcript of regulatory factor X2, human

TSL 4

Gene RFX2, Length 589 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX2-223	ENST00000592883	NISCH	Q9Y2I1	1504 aa		38.86	■■■■□ 3.81
RFX2-223	ENST00000592883	ABCC9	O60706	1549 aa		34.96	■■■■□ 3.19
RFX2-223	ENST00000592883	CCDC180	Q9P1Z9	1646 aa		34.94	■■■■□ 3.18
RFX2-223	ENST00000592883	RB1CC1	Q8TDY2	1594 aa		33.25	■■■□□ 2.91
RFX2-223	ENST00000592883	NACAD	O15069	1562 aa		33	■■■□□ 2.87
RFX2-223	ENST00000592883	DNAJC5B	Q9UF47	199 aa		32.83	■■■□□ 2.85
RFX2-223	ENST00000592883	DCAF8L2	P0C7V8	631 aa		32.82	■■■□□ 2.84
RFX2-223	ENST00000592883	UNC13A	Q9UPW8	1703 aa		32.65	■■■□□ 2.82
RFX2-223	ENST00000592883	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.52	■■■□□ 2.8
RFX2-223	ENST00000592883	MYO15B	Q96JP2	1530 aa		32.48	■■■□□ 2.79
RFX2-223	ENST00000592883	BICRA	Q9NZM4	1560 aa		32.32	■■■□□ 2.77
RFX2-223	ENST00000592883	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.2	■■■□□ 2.75
RFX2-223	ENST00000592883	DCAF1	Q9Y4B6	1507 aa		32.06	■■■□□ 2.72
RFX2-223	ENST00000592883	SCRIB	Q14160	1630 aa		31.85	■■■□□ 2.69
RFX2-223	ENST00000592883	SHROOM4	Q9ULL8	1493 aa		31.78	■■■□□ 2.68
RFX2-223	ENST00000592883	CC2D2A	Q9P2K1	1620 aa		31.61	■■■□□ 2.65
RFX2-223	ENST00000592883	EIF4G1	Q04637	1599 aa	Known RBP	31.51	■■■□□ 2.64
RFX2-223	ENST00000592883	CECR2	Q9BXF3	1484 aa		31.47	■■■□□ 2.63
RFX2-223	ENST00000592883	NCAPD3	P42695	1498 aa		30.44	■■■□□ 2.46
RFX2-223	ENST00000592883	SMARCA4	P51532	1647 aa		30.36	■■■□□ 2.45
RFX2-223	ENST00000592883	ATAD2B	Q9ULI0	1458 aa		30.36	■■■□□ 2.45
RFX2-223	ENST00000592883	SMARCA2	P51531	1590 aa		30.27	■■■□□ 2.44
RFX2-223	ENST00000592883	HMGXB3	Q12766	1538 aa		30.23	■■■□□ 2.43
RFX2-223	ENST00000592883	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.16	■■■□□ 2.42
RFX2-223	ENST00000592883	ERCC6	Q03468	1493 aa		30.16	■■■□□ 2.42
RFX2-223	ENST00000592883	DNAJC5	Q9H3Z4	198 aa		30.14	■■■□□ 2.42
RFX2-223	ENST00000592883	CUX2	O14529	1486 aa		30.12	■■■□□ 2.41
RFX2-223	ENST00000592883	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.06	■■■□□ 2.4
RFX2-223	ENST00000592883	NES	P48681	1621 aa		30.04	■■■□□ 2.4
RFX2-223	ENST00000592883	PEG3	Q9GZU2	1588 aa		30.03	■■■□□ 2.4
RFX2-223	ENST00000592883	MROH2B	Q7Z745	1585 aa		29.97	■■■□□ 2.39
RFX2-223	ENST00000592883	LAMC3	Q9Y6N6	1575 aa		29.8	■■■□□ 2.36
RFX2-223	ENST00000592883	THOC2	Q8NI27	1593 aa	Known RBP	29.77	■■■□□ 2.36
RFX2-223	ENST00000592883	KIF21A	Q7Z4S6	1674 aa		29.72	■■■□□ 2.35
RFX2-223	ENST00000592883	WIZ	O95785	1651 aa		29.66	■■■□□ 2.34
RFX2-223	ENST00000592883	PDS5B	Q9NTI5	1447 aa		29.57	■■■□□ 2.32
RFX2-223	ENST00000592883	CADPS	Q9ULU8	1353 aa		29.51	■■■□□ 2.31
RFX2-223	ENST00000592883	MRC2	Q9UBG0	1479 aa		29.36	■■■□□ 2.29
RFX2-223	ENST00000592883	WDR62	O43379	1518 aa		29.31	■■■□□ 2.28
RFX2-223	ENST00000592883	RSF1	Q96T23	1441 aa	Predicted RBP	29.29	■■■□□ 2.28
RFX2-223	ENST00000592883	CEP164	Q9UPV0	1460 aa		29.23	■■■□□ 2.27
RFX2-223	ENST00000592883	TOP2A	P11388	1531 aa	Known RBP	29.21	■■■□□ 2.27
RFX2-223	ENST00000592883	FANCD2	Q9BXW9	1451 aa		29.2	■■■□□ 2.26
RFX2-223	ENST00000592883	CFTR	P13569	1480 aa		29.17	■■■□□ 2.26
RFX2-223	ENST00000592883	PRDM2	Q13029	1718 aa		29.02	■■■□□ 2.24
RFX2-223	ENST00000592883	URB2	Q14146	1524 aa	Known RBP	28.99	■■■□□ 2.23
RFX2-223	ENST00000592883	CCDC88B	A6NC98	1476 aa		28.88	■■■□□ 2.21
RFX2-223	ENST00000592883	TRIM41	Q8WV44	630 aa		28.84	■■■□□ 2.21
RFX2-223	ENST00000592883	OSCAR	Q8IYS5	282 aa		28.71	■■■□□ 2.19
RFX2-223	ENST00000592883	TOPBP1	Q92547	1522 aa		28.66	■■■□□ 2.18
RFX2-223	ENST00000592883	IFT140	Q96RY7	1462 aa		28.64	■■■□□ 2.17
RFX2-223	ENST00000592883	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.64	■■■□□ 2.17
RFX2-223	ENST00000592883	DNMBP	Q6XZF7	1577 aa		28.55	■■■□□ 2.16
RFX2-223	ENST00000592883	ABCC8	Q09428	1581 aa		28.54	■■■□□ 2.16
RFX2-223	ENST00000592883	EIF4G3	O43432	1585 aa	Known RBP	28.5	■■■□□ 2.15
RFX2-223	ENST00000592883	RIMBP3C	A6NJZ7	1639 aa		28.44	■■■□□ 2.14
RFX2-223	ENST00000592883	RIMBP3B	A6NNM3	1639 aa		28.44	■■■□□ 2.14
RFX2-223	ENST00000592883	RIMBP3	Q9UFD9	1639 aa		28.44	■■■□□ 2.14
RFX2-223	ENST00000592883	TARBP1	Q13395	1621 aa	Known RBP	28.43	■■■□□ 2.14
RFX2-223	ENST00000592883	AQR	O60306	1485 aa	Known RBP eCLIP	28.36	■■■□□ 2.13
RFX2-223	ENST00000592883	CHD1	O14646	1710 aa		28.36	■■■□□ 2.13
RFX2-223	ENST00000592883	POLA1	P09884	1462 aa	Predicted RBP	28.35	■■■□□ 2.13
RFX2-223	ENST00000592883	ARHGEF11	O15085	1522 aa		28.3	■■■□□ 2.12
RFX2-223	ENST00000592883	RAD54L2	Q9Y4B4	1467 aa		28.27	■■■□□ 2.12
RFX2-223	ENST00000592883	SOGA1	O94964	1423 aa		28.2	■■■□□ 2.11
RFX2-223	ENST00000592883	FGD5	Q6ZNL6	1462 aa		28.18	■■■□□ 2.1
RFX2-223	ENST00000592883	TDRD9	Q8NDG6	1382 aa	Known RBP	28.16	■■■□□ 2.1
RFX2-223	ENST00000592883	FBLN2	P98095	1184 aa		28.16	■■■□□ 2.1
RFX2-223	ENST00000592883	CUX1	P39880	1505 aa		28.16	■■■□□ 2.1
RFX2-223	ENST00000592883	WDR97	A6NE52	1622 aa		28.1	■■■□□ 2.09
RFX2-223	ENST00000592883	SNAPC4	Q5SXM2	1469 aa		28.08	■■■□□ 2.09
RFX2-223	ENST00000592883	CYB5RL	Q6IPT4	315 aa		28.07	■■■□□ 2.08
RFX2-223	ENST00000592883	ARAP1	Q96P48	1450 aa		28.02	■■■□□ 2.08
RFX2-223	ENST00000592883	SUPT5H	O00267	1087 aa	Known RBP	27.97	■■■□□ 2.07
RFX2-223	ENST00000592883	PBRM1	Q86U86	1689 aa		27.97	■■■□□ 2.07
RFX2-223	ENST00000592883	GRIN2B	Q13224	1484 aa		27.96	■■■□□ 2.07
RFX2-223	ENST00000592883	MAGI1	Q96QZ7	1491 aa	Predicted RBP	27.96	■■■□□ 2.07
RFX2-223	ENST00000592883	CLASP1	Q7Z460	1538 aa		27.95	■■■□□ 2.06
RFX2-223	ENST00000592883	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.93	■■■□□ 2.06
RFX2-223	ENST00000592883	SYNJ1	O43426	1573 aa		27.92	■■■□□ 2.06
RFX2-223	ENST00000592883	SYNJ2	O15056	1496 aa		27.88	■■■□□ 2.05
RFX2-223	ENST00000592883	GAPVD1	Q14C86	1478 aa		27.87	■■■□□ 2.05
RFX2-223	ENST00000592883	ABCA5	Q8WWZ7	1642 aa		27.85	■■■□□ 2.05
RFX2-223	ENST00000592883	ABCA10	Q8WWZ4	1543 aa		27.83	■■■□□ 2.05
RFX2-223	ENST00000592883	TRH	P20396	242 aa	Predicted RBP	27.77	■■■□□ 2.04
RFX2-223	ENST00000592883	BIVM-ERCC5	R4GMW8	1640 aa		27.73	■■■□□ 2.03
RFX2-223	ENST00000592883	TOP2B	Q02880	1626 aa		27.69	■■■□□ 2.02
RFX2-223	ENST00000592883	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.68	■■■□□ 2.02
RFX2-223	ENST00000592883	ADAMTS12	P58397	1594 aa		27.64	■■■□□ 2.01
RFX2-223	ENST00000592883	GRIN2A	Q12879	1464 aa		27.62	■■■□□ 2.01
RFX2-223	ENST00000592883	CEP170	Q5SW79	1584 aa		27.56	■■■□□ 2
RFX2-223	ENST00000592883	ERCC6L2	Q5T890	1561 aa		27.55	■■■□□ 2
RFX2-223	ENST00000592883	NUP160	Q12769	1436 aa		27.52	■■■□□ 2
RFX2-223	ENST00000592883	FHAD1	B1AJZ9	1412 aa		27.5	■■□□□ 1.99
RFX2-223	ENST00000592883	ERICH3	Q5RHP9	1530 aa		27.49	■■□□□ 1.99
RFX2-223	ENST00000592883	SHROOM2	Q13796	1616 aa		27.45	■■□□□ 1.99
RFX2-223	ENST00000592883	PRG4	Q92954	1404 aa	Predicted RBP	27.25	■■□□□ 1.95
RFX2-223	ENST00000592883	RUSC2	Q8N2Y8	1516 aa		27.25	■■□□□ 1.95
RFX2-223	ENST00000592883	JPH4	Q96JJ6	628 aa		27.22	■■□□□ 1.95
RFX2-223	ENST00000592883	KIF13A	Q9H1H9	1805 aa		27.18	■■□□□ 1.94

Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms