RNA–Protein interactions for RNA: ENST00000592445.1

PRKCSH-216, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 2

Gene PRKCSH, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-216ENST00000592445 NISCHQ9Y2I1 1504 aa49.72■■■■■ 5.55
PRKCSH-216ENST00000592445 ABCC9O60706 1549 aa45.33■■■■■ 4.85
PRKCSH-216ENST00000592445 CCDC180Q9P1Z9 1646 aa44.77■■■■■ 4.76
PRKCSH-216ENST00000592445 DNAJC5BQ9UF47 199 aa42.93■■■■■ 4.46
PRKCSH-216ENST00000592445 RB1CC1Q8TDY2 1594 aa42.9■■■■■ 4.46
PRKCSH-216ENST00000592445 NACADO15069 1562 aa42.48■■■■■ 4.39
PRKCSH-216ENST00000592445 DCAF8L2P0C7V8 631 aa42.34■■■■■ 4.37
PRKCSH-216ENST00000592445 PABPN1Q86U42 306 aaKnown RBP eCLIP42.18■■■■■ 4.34
PRKCSH-216ENST00000592445 UNC13AQ9UPW8 1703 aa41.85■■■■■ 4.29
PRKCSH-216ENST00000592445 MYO15BQ96JP2 1530 aa41.7■■■■■ 4.27
PRKCSH-216ENST00000592445 BICRAQ9NZM4 1560 aa41.63■■■■■ 4.25
PRKCSH-216ENST00000592445 ZCCHC6Q5VYS8 1495 aaKnown RBP41.09■■■■■ 4.17
PRKCSH-216ENST00000592445 SHROOM4Q9ULL8 1493 aa41.02■■■■■ 4.16
PRKCSH-216ENST00000592445 DCAF1Q9Y4B6 1507 aa41■■■■■ 4.15
PRKCSH-216ENST00000592445 CECR2Q9BXF3 1484 aa40.89■■■■■ 4.14
PRKCSH-216ENST00000592445 CC2D2AQ9P2K1 1620 aa40.89■■■■■ 4.14
PRKCSH-216ENST00000592445 SCRIBQ14160 1630 aa40.84■■■■■ 4.13
PRKCSH-216ENST00000592445 EIF4G1Q04637 1599 aaKnown RBP40.68■■■■■ 4.1
PRKCSH-216ENST00000592445 DNAJC5Q9H3Z4 198 aa39.79■■■■□ 3.96
PRKCSH-216ENST00000592445 CUX2O14529 1486 aa39.24■■■■□ 3.87
PRKCSH-216ENST00000592445 NCAPD3P42695 1498 aa39.24■■■■□ 3.87
PRKCSH-216ENST00000592445 ERCC6Q03468 1493 aa39.21■■■■□ 3.87
PRKCSH-216ENST00000592445 ATAD2BQ9ULI0 1458 aa39.05■■■■□ 3.84
PRKCSH-216ENST00000592445 SMARCA2P51531 1590 aa38.92■■■■□ 3.82
PRKCSH-216ENST00000592445 HMGXB3Q12766 1538 aa38.88■■■■□ 3.81
PRKCSH-216ENST00000592445 SMARCA4P51532 1647 aa38.87■■■■□ 3.81
PRKCSH-216ENST00000592445 NESP48681 1621 aa38.78■■■■□ 3.8
PRKCSH-216ENST00000592445 BAZ1BQ9UIG0 1483 aaKnown RBP38.68■■■■□ 3.78
PRKCSH-216ENST00000592445 BAZ1AQ9NRL2 1556 aaPredicted RBP38.63■■■■□ 3.77
PRKCSH-216ENST00000592445 PEG3Q9GZU2 1588 aa38.46■■■■□ 3.75
PRKCSH-216ENST00000592445 THOC2Q8NI27 1593 aaKnown RBP38.44■■■■□ 3.74
PRKCSH-216ENST00000592445 LAMC3Q9Y6N6 1575 aa38.42■■■■□ 3.74
PRKCSH-216ENST00000592445 MROH2BQ7Z745 1585 aa38.31■■■■□ 3.72
PRKCSH-216ENST00000592445 PDS5BQ9NTI5 1447 aa38.28■■■■□ 3.72
PRKCSH-216ENST00000592445 KIF21AQ7Z4S6 1674 aa38.23■■■■□ 3.71
PRKCSH-216ENST00000592445 CADPSQ9ULU8 1353 aa38.05■■■■□ 3.68
PRKCSH-216ENST00000592445 MRC2Q9UBG0 1479 aa37.94■■■■□ 3.66
PRKCSH-216ENST00000592445 TRIM41Q8WV44 630 aa37.93■■■■□ 3.66
PRKCSH-216ENST00000592445 WDR62O43379 1518 aa37.83■■■■□ 3.65
PRKCSH-216ENST00000592445 WIZO95785 1651 aa37.82■■■■□ 3.64
PRKCSH-216ENST00000592445 CEP164Q9UPV0 1460 aa37.71■■■■□ 3.63
PRKCSH-216ENST00000592445 FANCD2Q9BXW9 1451 aa37.62■■■■□ 3.61
PRKCSH-216ENST00000592445 CFTRP13569 1480 aa37.49■■■■□ 3.59
PRKCSH-216ENST00000592445 OSCARQ8IYS5 282 aa37.44■■■■□ 3.58
PRKCSH-216ENST00000592445 RSF1Q96T23 1441 aaPredicted RBP37.36■■■■□ 3.57
PRKCSH-216ENST00000592445 TOP2AP11388 1531 aaKnown RBP37.31■■■■□ 3.56
PRKCSH-216ENST00000592445 URB2Q14146 1524 aaKnown RBP37.31■■■■□ 3.56
PRKCSH-216ENST00000592445 PRDM2Q13029 1718 aa37■■■■□ 3.51
PRKCSH-216ENST00000592445 IFT140Q96RY7 1462 aa36.96■■■■□ 3.51
PRKCSH-216ENST00000592445 ZNF608Q9ULD9 1512 aaPredicted RBP36.95■■■■□ 3.5
PRKCSH-216ENST00000592445 RIMBP3CA6NJZ7 1639 aa36.92■■■■□ 3.5
PRKCSH-216ENST00000592445 RIMBP3BA6NNM3 1639 aa36.92■■■■□ 3.5
PRKCSH-216ENST00000592445 RIMBP3Q9UFD9 1639 aa36.92■■■■□ 3.5
PRKCSH-216ENST00000592445 CCDC88BA6NC98 1476 aa36.92■■■■□ 3.5
PRKCSH-216ENST00000592445 TOPBP1Q92547 1522 aa36.84■■■■□ 3.49
PRKCSH-216ENST00000592445 ARHGEF11O15085 1522 aa36.77■■■■□ 3.48
PRKCSH-216ENST00000592445 ABCC8Q09428 1581 aa36.74■■■■□ 3.47
PRKCSH-216ENST00000592445 EIF4G3O43432 1585 aaKnown RBP36.7■■■■□ 3.46
PRKCSH-216ENST00000592445 DNMBPQ6XZF7 1577 aa36.65■■■■□ 3.46
PRKCSH-216ENST00000592445 CYB5RLQ6IPT4 315 aa36.62■■■■□ 3.45
PRKCSH-216ENST00000592445 AQRO60306 1485 aaKnown RBP eCLIP36.58■■■■□ 3.459e-11■■□□□ 13.5
PRKCSH-216ENST00000592445 FBLN2P98095 1184 aa36.52■■■■□ 3.44
PRKCSH-216ENST00000592445 TARBP1Q13395 1621 aaKnown RBP36.51■■■■□ 3.43
PRKCSH-216ENST00000592445 CHD1O14646 1710 aa36.5■■■■□ 3.43
PRKCSH-216ENST00000592445 POLA1P09884 1462 aaPredicted RBP36.43■■■■□ 3.42
PRKCSH-216ENST00000592445 TRHP20396 242 aaPredicted RBP36.41■■■■□ 3.42
PRKCSH-216ENST00000592445 ARAP1Q96P48 1450 aa36.37■■■■□ 3.41
PRKCSH-216ENST00000592445 RAD54L2Q9Y4B4 1467 aa36.33■■■■□ 3.41
PRKCSH-216ENST00000592445 SOGA1O94964 1423 aa36.3■■■■□ 3.4
PRKCSH-216ENST00000592445 TDRD9Q8NDG6 1382 aaKnown RBP36.29■■■■□ 3.4
PRKCSH-216ENST00000592445 SNAPC4Q5SXM2 1469 aa36.18■■■■□ 3.38
PRKCSH-216ENST00000592445 CHMP7Q8WUX9 453 aaPredicted RBP36.15■■■■□ 3.38
PRKCSH-216ENST00000592445 FGD5Q6ZNL6 1462 aa36.14■■■■□ 3.38
PRKCSH-216ENST00000592445 WDR97A6NE52 1622 aa36.1■■■■□ 3.37
PRKCSH-216ENST00000592445 CLASP1Q7Z460 1538 aa36.07■■■■□ 3.36
PRKCSH-216ENST00000592445 MAGI1Q96QZ7 1491 aaPredicted RBP36.05■■■■□ 3.36
PRKCSH-216ENST00000592445 SYNJ1O43426 1573 aa36.05■■■■□ 3.36
PRKCSH-216ENST00000592445 CUX1P39880 1505 aa36.02■■■■□ 3.36
PRKCSH-216ENST00000592445 GRIN2BQ13224 1484 aa36.01■■■■□ 3.36
PRKCSH-216ENST00000592445 SYNJ2O15056 1496 aa35.94■■■■□ 3.34
PRKCSH-216ENST00000592445 GAPVD1Q14C86 1478 aa35.83■■■■□ 3.33
PRKCSH-216ENST00000592445 PBRM1Q86U86 1689 aa35.79■■■■□ 3.32
PRKCSH-216ENST00000592445 AEBP2Q6ZN18 517 aaPredicted RBP35.7■■■■□ 3.31
PRKCSH-216ENST00000592445 ABCA10Q8WWZ4 1543 aa35.69■■■■□ 3.3
PRKCSH-216ENST00000592445 ABCA5Q8WWZ7 1642 aa35.65■■■■□ 3.3
PRKCSH-216ENST00000592445 GRIN2AQ12879 1464 aa35.54■■■■□ 3.28
PRKCSH-216ENST00000592445 WRNQ14191 1432 aaPredicted RBP eCLIP35.5■■■■□ 3.27
PRKCSH-216ENST00000592445 ERCC6L2Q5T890 1561 aa35.49■■■■□ 3.27
PRKCSH-216ENST00000592445 SUPT5HO00267 1087 aaKnown RBP35.46■■■■□ 3.27
PRKCSH-216ENST00000592445 ADAMTS12P58397 1594 aa35.43■■■■□ 3.26
PRKCSH-216ENST00000592445 NUP160Q12769 1436 aa35.42■■■■□ 3.26
PRKCSH-216ENST00000592445 CEP170Q5SW79 1584 aa35.41■■■■□ 3.26
PRKCSH-216ENST00000592445 FHAD1B1AJZ9 1412 aa35.35■■■■□ 3.25
PRKCSH-216ENST00000592445 TOP2BQ02880 1626 aa35.3■■■■□ 3.24
PRKCSH-216ENST00000592445 SHROOM2Q13796 1616 aa35.28■■■■□ 3.24
PRKCSH-216ENST00000592445 BIVM-ERCC5R4GMW8 1640 aa35.28■■■■□ 3.24
PRKCSH-216ENST00000592445 ERICH3Q5RHP9 1530 aa35.23■■■■□ 3.23
PRKCSH-216ENST00000592445 PRG4Q92954 1404 aaPredicted RBP35.17■■■■□ 3.22
PRKCSH-216ENST00000592445 JPH4Q96JJ6 628 aa35.13■■■■□ 3.21
PRKCSH-216ENST00000592445 KIF13AQ9H1H9 1805 aa35.06■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms