RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 NISCHQ9Y2I1 1504 aa24.15■■□□□ 1.46
BRCA1-227ENST00000591849 CCDC180Q9P1Z9 1646 aa21.55■■□□□ 1.04
BRCA1-227ENST00000591849 ABCC9O60706 1549 aa21.39■■□□□ 1.01
BRCA1-227ENST00000591849 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
BRCA1-227ENST00000591849 RB1CC1Q8TDY2 1594 aa20.46■□□□□ 0.87
BRCA1-227ENST00000591849 NACADO15069 1562 aa20.29■□□□□ 0.84
BRCA1-227ENST00000591849 UNC13AQ9UPW8 1703 aa20.07■□□□□ 0.8
BRCA1-227ENST00000591849 ZCCHC6Q5VYS8 1495 aaKnown RBP20.07■□□□□ 0.8
BRCA1-227ENST00000591849 MYO15BQ96JP2 1530 aa20.02■□□□□ 0.8
BRCA1-227ENST00000591849 DNAJC5BQ9UF47 199 aa20■□□□□ 0.79
BRCA1-227ENST00000591849 DCAF1Q9Y4B6 1507 aa19.93■□□□□ 0.78
BRCA1-227ENST00000591849 PABPN1Q86U42 306 aaKnown RBP eCLIP19.85■□□□□ 0.77
BRCA1-227ENST00000591849 BICRAQ9NZM4 1560 aa19.83■□□□□ 0.76
BRCA1-227ENST00000591849 SHROOM4Q9ULL8 1493 aa19.67■□□□□ 0.74
BRCA1-227ENST00000591849 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
BRCA1-227ENST00000591849 CC2D2AQ9P2K1 1620 aa19.4■□□□□ 0.7
BRCA1-227ENST00000591849 EIF4G1Q04637 1599 aaKnown RBP19.35■□□□□ 0.69
BRCA1-227ENST00000591849 CECR2Q9BXF3 1484 aa19.3■□□□□ 0.68
BRCA1-227ENST00000591849 BAZ1AQ9NRL2 1556 aaPredicted RBP18.73■□□□□ 0.59
BRCA1-227ENST00000591849 SMARCA4P51532 1647 aa18.71■□□□□ 0.59
BRCA1-227ENST00000591849 NCAPD3P42695 1498 aa18.68■□□□□ 0.58
BRCA1-227ENST00000591849 ATAD2BQ9ULI0 1458 aa18.68■□□□□ 0.58
BRCA1-227ENST00000591849 SMARCA2P51531 1590 aa18.65■□□□□ 0.58
BRCA1-227ENST00000591849 HMGXB3Q12766 1538 aa18.62■□□□□ 0.57
BRCA1-227ENST00000591849 MROH2BQ7Z745 1585 aa18.61■□□□□ 0.57
BRCA1-227ENST00000591849 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
BRCA1-227ENST00000591849 CUX2O14529 1486 aa18.56■□□□□ 0.56
BRCA1-227ENST00000591849 ERCC6Q03468 1493 aa18.51■□□□□ 0.55
BRCA1-227ENST00000591849 PEG3Q9GZU2 1588 aa18.48■□□□□ 0.55
BRCA1-227ENST00000591849 DNAJC5Q9H3Z4 198 aa18.48■□□□□ 0.55
BRCA1-227ENST00000591849 RSF1Q96T23 1441 aaPredicted RBP18.42■□□□□ 0.54
BRCA1-227ENST00000591849 WIZO95785 1651 aa18.38■□□□□ 0.53
BRCA1-227ENST00000591849 NESP48681 1621 aa18.35■□□□□ 0.53
BRCA1-227ENST00000591849 LAMC3Q9Y6N6 1575 aa18.34■□□□□ 0.53
BRCA1-227ENST00000591849 THOC2Q8NI27 1593 aaKnown RBP18.31■□□□□ 0.52
BRCA1-227ENST00000591849 KIF21AQ7Z4S6 1674 aa18.25■□□□□ 0.51
BRCA1-227ENST00000591849 TOP2AP11388 1531 aaKnown RBP18.2■□□□□ 0.5
BRCA1-227ENST00000591849 CADPSQ9ULU8 1353 aa18.19■□□□□ 0.5
BRCA1-227ENST00000591849 PDS5BQ9NTI5 1447 aa18.15■□□□□ 0.5
BRCA1-227ENST00000591849 SUPT5HO00267 1087 aaKnown RBP18.13■□□□□ 0.49
BRCA1-227ENST00000591849 CCDC88BA6NC98 1476 aa18.04■□□□□ 0.48
BRCA1-227ENST00000591849 MRC2Q9UBG0 1479 aa18.03■□□□□ 0.48
BRCA1-227ENST00000591849 WDR62O43379 1518 aa18.02■□□□□ 0.47
BRCA1-227ENST00000591849 CFTRP13569 1480 aa18.01■□□□□ 0.47
BRCA1-227ENST00000591849 FANCD2Q9BXW9 1451 aa17.95■□□□□ 0.46
BRCA1-227ENST00000591849 CEP164Q9UPV0 1460 aa17.95■□□□□ 0.46
BRCA1-227ENST00000591849 PRDM2Q13029 1718 aa17.92■□□□□ 0.46
BRCA1-227ENST00000591849 URB2Q14146 1524 aaKnown RBP17.75■□□□□ 0.43
BRCA1-227ENST00000591849 ABCC8Q09428 1581 aa17.67■□□□□ 0.42
BRCA1-227ENST00000591849 TOPBP1Q92547 1522 aa17.63■□□□□ 0.41
BRCA1-227ENST00000591849 TRIM41Q8WV44 630 aa17.59■□□□□ 0.41
BRCA1-227ENST00000591849 DNMBPQ6XZF7 1577 aa17.58■□□□□ 0.41
BRCA1-227ENST00000591849 IFT140Q96RY7 1462 aa17.58■□□□□ 0.41
BRCA1-227ENST00000591849 OSCARQ8IYS5 282 aa17.56■□□□□ 0.4
BRCA1-227ENST00000591849 EIF4G3O43432 1585 aaKnown RBP17.52■□□□□ 0.39
BRCA1-227ENST00000591849 SOGA1O94964 1423 aa17.5■□□□□ 0.39
BRCA1-227ENST00000591849 ZNF608Q9ULD9 1512 aaPredicted RBP17.5■□□□□ 0.39
BRCA1-227ENST00000591849 POLA1P09884 1462 aaPredicted RBP17.48■□□□□ 0.39
BRCA1-227ENST00000591849 RIMBP3CA6NJZ7 1639 aa17.47■□□□□ 0.39
BRCA1-227ENST00000591849 RIMBP3BA6NNM3 1639 aa17.47■□□□□ 0.39
BRCA1-227ENST00000591849 RIMBP3Q9UFD9 1639 aa17.47■□□□□ 0.39
BRCA1-227ENST00000591849 TARBP1Q13395 1621 aaKnown RBP17.46■□□□□ 0.39
BRCA1-227ENST00000591849 CUX1P39880 1505 aa17.46■□□□□ 0.39
BRCA1-227ENST00000591849 FGD5Q6ZNL6 1462 aa17.44■□□□□ 0.38
BRCA1-227ENST00000591849 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
BRCA1-227ENST00000591849 CHD1O14646 1710 aa17.43■□□□□ 0.38
BRCA1-227ENST00000591849 AQRO60306 1485 aaKnown RBP eCLIP17.42■□□□□ 0.384e-10■■■■■ 36.9
BRCA1-227ENST00000591849 TDRD9Q8NDG6 1382 aaKnown RBP17.41■□□□□ 0.38
BRCA1-227ENST00000591849 WRNQ14191 1432 aaPredicted RBP eCLIP17.41■□□□□ 0.381e-6■■■■■ 58.5
BRCA1-227ENST00000591849 ARHGEF11O15085 1522 aa17.39■□□□□ 0.37
BRCA1-227ENST00000591849 FBLN2P98095 1184 aa17.37■□□□□ 0.37
BRCA1-227ENST00000591849 WDR97A6NE52 1622 aa17.36■□□□□ 0.37
BRCA1-227ENST00000591849 CHMP7Q8WUX9 453 aaPredicted RBP17.28■□□□□ 0.36
BRCA1-227ENST00000591849 TOP2BQ02880 1626 aa17.27■□□□□ 0.36
BRCA1-227ENST00000591849 SYNJ1O43426 1573 aa17.27■□□□□ 0.35
BRCA1-227ENST00000591849 GRIN2BQ13224 1484 aa17.25■□□□□ 0.35
BRCA1-227ENST00000591849 ABCA10Q8WWZ4 1543 aa17.25■□□□□ 0.35
BRCA1-227ENST00000591849 GAPVD1Q14C86 1478 aa17.24■□□□□ 0.35
BRCA1-227ENST00000591849 BIVM-ERCC5R4GMW8 1640 aa17.23■□□□□ 0.35
BRCA1-227ENST00000591849 SNAPC4Q5SXM2 1469 aa17.22■□□□□ 0.35
BRCA1-227ENST00000591849 MAGI1Q96QZ7 1491 aaPredicted RBP17.2■□□□□ 0.34
BRCA1-227ENST00000591849 ARAP1Q96P48 1450 aa17.19■□□□□ 0.34
BRCA1-227ENST00000591849 PBRM1Q86U86 1689 aa17.19■□□□□ 0.34
BRCA1-227ENST00000591849 CLASP1Q7Z460 1538 aa17.18■□□□□ 0.34
BRCA1-227ENST00000591849 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
BRCA1-227ENST00000591849 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
BRCA1-227ENST00000591849 CYB5RLQ6IPT4 315 aa17.11■□□□□ 0.33
BRCA1-227ENST00000591849 KIF27Q86VH2 1401 aa17.08■□□□□ 0.32
BRCA1-227ENST00000591849 FHAD1B1AJZ9 1412 aa17.06■□□□□ 0.32
BRCA1-227ENST00000591849 ERICH3Q5RHP9 1530 aa17.04■□□□□ 0.32
BRCA1-227ENST00000591849 IGF1RP08069 1367 aa17■□□□□ 0.31
BRCA1-227ENST00000591849 GRIN2AQ12879 1464 aa16.99■□□□□ 0.31
BRCA1-227ENST00000591849 ADAMTS12P58397 1594 aa16.98■□□□□ 0.31
BRCA1-227ENST00000591849 TRHP20396 242 aaPredicted RBP16.94■□□□□ 0.3
BRCA1-227ENST00000591849 CARMIL1Q5VZK9 1371 aa16.93■□□□□ 0.3
BRCA1-227ENST00000591849 NUP160Q12769 1436 aa16.9■□□□□ 0.3
BRCA1-227ENST00000591849 CEP170Q5SW79 1584 aa16.89■□□□□ 0.3
BRCA1-227ENST00000591849 SHROOM2Q13796 1616 aa16.89■□□□□ 0.29
BRCA1-227ENST00000591849 JPH4Q96JJ6 628 aa16.88■□□□□ 0.29
BRCA1-227ENST00000591849 RUSC2Q8N2Y8 1516 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms