RNA–Protein interactions for RNA: ENST00000591226.1

TPM4-213, Transcript of tropomyosin 4, humanhuman

Gene TPM4, Length 2,672 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-213ENST00000591226 NISCHQ9Y2I1 1504 aa24.85■■□□□ 1.57
TPM4-213ENST00000591226 CCDC180Q9P1Z9 1646 aa21.47■■□□□ 1.03
TPM4-213ENST00000591226 ZCCHC6Q5VYS8 1495 aaKnown RBP20.95■□□□□ 0.94
TPM4-213ENST00000591226 SHROOM4Q9ULL8 1493 aa20.65■□□□□ 0.9
TPM4-213ENST00000591226 DCAF8L2P0C7V8 631 aa20.54■□□□□ 0.88
TPM4-213ENST00000591226 DCAF1Q9Y4B6 1507 aa20.48■□□□□ 0.87
TPM4-213ENST00000591226 ABCC9O60706 1549 aa20.15■□□□□ 0.82
TPM4-213ENST00000591226 MYO15BQ96JP2 1530 aa20.09■□□□□ 0.81
TPM4-213ENST00000591226 SUPT5HO00267 1087 aaKnown RBP19.99■□□□□ 0.79
TPM4-213ENST00000591226 NACADO15069 1562 aa19.93■□□□□ 0.78
TPM4-213ENST00000591226 SCRIBQ14160 1630 aa19.91■□□□□ 0.78
TPM4-213ENST00000591226 RB1CC1Q8TDY2 1594 aa19.7■□□□□ 0.74
TPM4-213ENST00000591226 CHIC1Q5VXU3 224 aa19.51■□□□□ 0.71
TPM4-213ENST00000591226 RSF1Q96T23 1441 aaPredicted RBP19.43■□□□□ 0.7
TPM4-213ENST00000591226 UNC13AQ9UPW8 1703 aa19.38■□□□□ 0.69
TPM4-213ENST00000591226 CECR2Q9BXF3 1484 aa19.36■□□□□ 0.69
TPM4-213ENST00000591226 MROH2BQ7Z745 1585 aa19.26■□□□□ 0.67
TPM4-213ENST00000591226 BICRAQ9NZM4 1560 aa19.16■□□□□ 0.66
TPM4-213ENST00000591226 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
TPM4-213ENST00000591226 WIZO95785 1651 aa19.13■□□□□ 0.65
TPM4-213ENST00000591226 PABPN1Q86U42 306 aaKnown RBP eCLIP19.1■□□□□ 0.65
TPM4-213ENST00000591226 SMARCA4P51532 1647 aa19.05■□□□□ 0.64
TPM4-213ENST00000591226 TOP2AP11388 1531 aaKnown RBP18.88■□□□□ 0.61
TPM4-213ENST00000591226 PEG3Q9GZU2 1588 aa18.75■□□□□ 0.59
TPM4-213ENST00000591226 SMARCA2P51531 1590 aa18.75■□□□□ 0.59
TPM4-213ENST00000591226 CCDC88BA6NC98 1476 aa18.73■□□□□ 0.59
TPM4-213ENST00000591226 EIF4G1Q04637 1599 aaKnown RBP18.73■□□□□ 0.59
TPM4-213ENST00000591226 TRIM41Q8WV44 630 aa18.71■□□□□ 0.59
TPM4-213ENST00000591226 ATAD2BQ9ULI0 1458 aa18.66■□□□□ 0.58
TPM4-213ENST00000591226 AEBP2Q6ZN18 517 aaPredicted RBP18.62■□□□□ 0.57
TPM4-213ENST00000591226 LOC105371045A0A1W2PR82 267 aa18.59■□□□□ 0.57
TPM4-213ENST00000591226 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.56
TPM4-213ENST00000591226 ABCC8Q09428 1581 aa18.49■□□□□ 0.55
TPM4-213ENST00000591226 FAM9AQ8IZU1 332 aaPredicted RBP18.47■□□□□ 0.55
TPM4-213ENST00000591226 NCAPD3P42695 1498 aa18.4■□□□□ 0.54
TPM4-213ENST00000591226 SLC24A1O60721 1099 aa18.4■□□□□ 0.54
TPM4-213ENST00000591226 HMGXB3Q12766 1538 aa18.4■□□□□ 0.54
TPM4-213ENST00000591226 WRNQ14191 1432 aaPredicted RBP eCLIP18.27■□□□□ 0.52
TPM4-213ENST00000591226 EHMT2Q96KQ7 1210 aa18.26■□□□□ 0.51
TPM4-213ENST00000591226 SYNJ1O43426 1573 aa18.22■□□□□ 0.51
TPM4-213ENST00000591226 CC2D2AQ9P2K1 1620 aa18.21■□□□□ 0.5
TPM4-213ENST00000591226 SOGA1O94964 1423 aa18.2■□□□□ 0.5
TPM4-213ENST00000591226 RUSC2Q8N2Y8 1516 aa18.13■□□□□ 0.49
TPM4-213ENST00000591226 EEA1Q15075 1411 aa18.11■□□□□ 0.49
TPM4-213ENST00000591226 CFTRP13569 1480 aa18.11■□□□□ 0.49
TPM4-213ENST00000591226 TOP2BQ02880 1626 aa18.07■□□□□ 0.48
TPM4-213ENST00000591226 PCGF6Q9BYE7 350 aa18.06■□□□□ 0.48
TPM4-213ENST00000591226 CSRNP3Q8WYN3 585 aa18.05■□□□□ 0.48
TPM4-213ENST00000591226 BIVM-ERCC5R4GMW8 1640 aa18.04■□□□□ 0.48
TPM4-213ENST00000591226 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
TPM4-213ENST00000591226 CUX1P39880 1505 aa17.98■□□□□ 0.47
TPM4-213ENST00000591226 CADPSQ9ULU8 1353 aa17.98■□□□□ 0.47
TPM4-213ENST00000591226 GOLGA3Q08378 1498 aa17.93■□□□□ 0.46
TPM4-213ENST00000591226 TNIKQ9UKE5 1360 aa17.93■□□□□ 0.46
TPM4-213ENST00000591226 TRIM26Q12899 539 aaPredicted RBP17.91■□□□□ 0.46
TPM4-213ENST00000591226 CEP162Q5TB80 1403 aa17.9■□□□□ 0.46
TPM4-213ENST00000591226 KIF21BO75037 1637 aa17.9■□□□□ 0.46
TPM4-213ENST00000591226 CEP164Q9UPV0 1460 aa17.89■□□□□ 0.46
TPM4-213ENST00000591226 UBTFP17480 764 aaKnown RBP17.88■□□□□ 0.45
TPM4-213ENST00000591226 FANCD2Q9BXW9 1451 aa17.81■□□□□ 0.44
TPM4-213ENST00000591226 NESP48681 1621 aa17.81■□□□□ 0.44
TPM4-213ENST00000591226 RAPGEF2Q9Y4G8 1499 aa17.8■□□□□ 0.44
TPM4-213ENST00000591226 KIF27Q86VH2 1401 aa17.76■□□□□ 0.43
TPM4-213ENST00000591226 HRCP23327 699 aa17.76■□□□□ 0.43
TPM4-213ENST00000591226 DNAJC5BQ9UF47 199 aa17.75■□□□□ 0.43
TPM4-213ENST00000591226 PPARGC1BQ86YN6 1023 aaKnown RBP17.75■□□□□ 0.43
TPM4-213ENST00000591226 FGD5Q6ZNL6 1462 aa17.73■□□□□ 0.43
TPM4-213ENST00000591226 PRXQ9BXM0 1461 aa17.73■□□□□ 0.43
TPM4-213ENST00000591226 LAMC3Q9Y6N6 1575 aa17.73■□□□□ 0.43
TPM4-213ENST00000591226 ERICH3Q5RHP9 1530 aa17.71■□□□□ 0.43
TPM4-213ENST00000591226 CUX2O14529 1486 aa17.69■□□□□ 0.42
TPM4-213ENST00000591226 DNMBPQ6XZF7 1577 aa17.68■□□□□ 0.42
TPM4-213ENST00000591226 CLIP1P30622 1438 aa17.68■□□□□ 0.42
TPM4-213ENST00000591226 PHF23Q9BUL5 403 aaPredicted RBP17.66■□□□□ 0.42
TPM4-213ENST00000591226 TOPBP1Q92547 1522 aa17.65■□□□□ 0.42
TPM4-213ENST00000591226 POLA1P09884 1462 aaPredicted RBP17.6■□□□□ 0.41
TPM4-213ENST00000591226 IGF1RP08069 1367 aa17.59■□□□□ 0.41
TPM4-213ENST00000591226 URB2Q14146 1524 aaKnown RBP17.59■□□□□ 0.41
TPM4-213ENST00000591226 RANGAP1P46060 587 aaPredicted RBP17.59■□□□□ 0.41
TPM4-213ENST00000591226 PDS5BQ9NTI5 1447 aa17.59■□□□□ 0.41
TPM4-213ENST00000591226 RAD54L2Q9Y4B4 1467 aa17.58■□□□□ 0.4
TPM4-213ENST00000591226 TTBK1Q5TCY1 1321 aaPredicted RBP17.56■□□□□ 0.4
TPM4-213ENST00000591226 KIF21AQ7Z4S6 1674 aa17.56■□□□□ 0.4
TPM4-213ENST00000591226 VPS8Q8N3P4 1428 aa17.55■□□□□ 0.4
TPM4-213ENST00000591226 ABCA10Q8WWZ4 1543 aa17.55■□□□□ 0.4
TPM4-213ENST00000591226 CARMIL1Q5VZK9 1371 aa17.51■□□□□ 0.39
TPM4-213ENST00000591226 ARAP1Q96P48 1450 aa17.48■□□□□ 0.39
TPM4-213ENST00000591226 WDR97A6NE52 1622 aa17.47■□□□□ 0.39
TPM4-213ENST00000591226 ARHGAP35Q9NRY4 1499 aa17.41■□□□□ 0.38
TPM4-213ENST00000591226 ABCA5Q8WWZ7 1642 aa17.39■□□□□ 0.37
TPM4-213ENST00000591226 CUL7Q14999 1698 aa17.39■□□□□ 0.37
TPM4-213ENST00000591226 PLPPR3Q6T4P5 718 aa17.39■□□□□ 0.37
TPM4-213ENST00000591226 TDRD9Q8NDG6 1382 aaKnown RBP17.38■□□□□ 0.37
TPM4-213ENST00000591226 APLP2Q06481 763 aa17.38■□□□□ 0.37
TPM4-213ENST00000591226 PELP1Q8IZL8 1130 aaKnown RBP17.38■□□□□ 0.37
TPM4-213ENST00000591226 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
TPM4-213ENST00000591226 TARBP1Q13395 1621 aaKnown RBP17.36■□□□□ 0.37
TPM4-213ENST00000591226 GAPVD1Q14C86 1478 aa17.35■□□□□ 0.37
TPM4-213ENST00000591226 ZEB1P37275 1124 aaPredicted RBP17.3■□□□□ 0.36
TPM4-213ENST00000591226 CTTNBP2Q8WZ74 1663 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms