RNA–Protein interactions for RNA: ENST00000590627.5

GCDH-213, Transcript of glutaryl-CoA dehydrogenase, humanhuman

TSL 1 (best)

Gene GCDH, Length 1,051 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCDH-213ENST00000590627 NISCHQ9Y2I1 1504 aa39.95■■■■□ 3.99
GCDH-213ENST00000590627 CCDC180Q9P1Z9 1646 aa35.91■■■■□ 3.34
GCDH-213ENST00000590627 ABCC9O60706 1549 aa35.85■■■■□ 3.33
GCDH-213ENST00000590627 RB1CC1Q8TDY2 1594 aa34.18■■■■□ 3.06
GCDH-213ENST00000590627 NACADO15069 1562 aa33.95■■■■□ 3.03
GCDH-213ENST00000590627 DCAF8L2P0C7V8 631 aa33.64■■■□□ 2.98
GCDH-213ENST00000590627 DNAJC5BQ9UF47 199 aa33.64■■■□□ 2.98
GCDH-213ENST00000590627 MYO15BQ96JP2 1530 aa33.52■■■□□ 2.96
GCDH-213ENST00000590627 UNC13AQ9UPW8 1703 aa33.38■■■□□ 2.93
GCDH-213ENST00000590627 PABPN1Q86U42 306 aaKnown RBP eCLIP33.34■■■□□ 2.93
GCDH-213ENST00000590627 BICRAQ9NZM4 1560 aa33.16■■■□□ 2.9
GCDH-213ENST00000590627 ZCCHC6Q5VYS8 1495 aaKnown RBP33.11■■■□□ 2.89
GCDH-213ENST00000590627 DCAF1Q9Y4B6 1507 aa33.06■■■□□ 2.88
GCDH-213ENST00000590627 SHROOM4Q9ULL8 1493 aa32.8■■■□□ 2.84
GCDH-213ENST00000590627 SCRIBQ14160 1630 aa32.62■■■□□ 2.81
GCDH-213ENST00000590627 CC2D2AQ9P2K1 1620 aa32.42■■■□□ 2.78
GCDH-213ENST00000590627 EIF4G1Q04637 1599 aaKnown RBP32.36■■■□□ 2.77
GCDH-213ENST00000590627 CECR2Q9BXF3 1484 aa32.33■■■□□ 2.77
GCDH-213ENST00000590627 NCAPD3P42695 1498 aa31.34■■■□□ 2.61
GCDH-213ENST00000590627 ATAD2BQ9ULI0 1458 aa31.21■■■□□ 2.59
GCDH-213ENST00000590627 SMARCA4P51532 1647 aa31.17■■■□□ 2.58
GCDH-213ENST00000590627 SMARCA2P51531 1590 aa31.15■■■□□ 2.58
GCDH-213ENST00000590627 HMGXB3Q12766 1538 aa31.11■■■□□ 2.57
GCDH-213ENST00000590627 BAZ1AQ9NRL2 1556 aaPredicted RBP31.03■■■□□ 2.56
GCDH-213ENST00000590627 CUX2O14529 1486 aa31■■■□□ 2.55
GCDH-213ENST00000590627 ERCC6Q03468 1493 aa30.98■■■□□ 2.55
GCDH-213ENST00000590627 DNAJC5Q9H3Z4 198 aa30.98■■■□□ 2.55
GCDH-213ENST00000590627 PEG3Q9GZU2 1588 aa30.91■■■□□ 2.54
GCDH-213ENST00000590627 BAZ1BQ9UIG0 1483 aaKnown RBP30.9■■■□□ 2.54
GCDH-213ENST00000590627 NESP48681 1621 aa30.78■■■□□ 2.52
GCDH-213ENST00000590627 MROH2BQ7Z745 1585 aa30.75■■■□□ 2.51
GCDH-213ENST00000590627 LAMC3Q9Y6N6 1575 aa30.65■■■□□ 2.5
GCDH-213ENST00000590627 THOC2Q8NI27 1593 aaKnown RBP30.53■■■□□ 2.48
GCDH-213ENST00000590627 PDS5BQ9NTI5 1447 aa30.46■■■□□ 2.47
GCDH-213ENST00000590627 KIF21AQ7Z4S6 1674 aa30.41■■■□□ 2.46
GCDH-213ENST00000590627 WIZO95785 1651 aa30.37■■■□□ 2.45
GCDH-213ENST00000590627 CADPSQ9ULU8 1353 aa30.37■■■□□ 2.45
GCDH-213ENST00000590627 MRC2Q9UBG0 1479 aa30.18■■■□□ 2.42
GCDH-213ENST00000590627 WDR62O43379 1518 aa30.12■■■□□ 2.41
GCDH-213ENST00000590627 RSF1Q96T23 1441 aaPredicted RBP30.11■■■□□ 2.41
GCDH-213ENST00000590627 CEP164Q9UPV0 1460 aa30.06■■■□□ 2.4
GCDH-213ENST00000590627 TOP2AP11388 1531 aaKnown RBP30.02■■■□□ 2.4
GCDH-213ENST00000590627 CFTRP13569 1480 aa30.02■■■□□ 2.4
GCDH-213ENST00000590627 FANCD2Q9BXW9 1451 aa30■■■□□ 2.39
GCDH-213ENST00000590627 URB2Q14146 1524 aaKnown RBP29.75■■■□□ 2.35
GCDH-213ENST00000590627 PRDM2Q13029 1718 aa29.73■■■□□ 2.35
GCDH-213ENST00000590627 CCDC88BA6NC98 1476 aa29.66■■■□□ 2.34
GCDH-213ENST00000590627 SUPT5HO00267 1087 aaKnown RBP29.6■■■□□ 2.33
GCDH-213ENST00000590627 OSCARQ8IYS5 282 aa29.54■■■□□ 2.32
GCDH-213ENST00000590627 TRIM41Q8WV44 630 aa29.54■■■□□ 2.32
GCDH-213ENST00000590627 IFT140Q96RY7 1462 aa29.46■■■□□ 2.31
GCDH-213ENST00000590627 TOPBP1Q92547 1522 aa29.43■■■□□ 2.3
GCDH-213ENST00000590627 ABCC8Q09428 1581 aa29.43■■■□□ 2.3
GCDH-213ENST00000590627 ZNF608Q9ULD9 1512 aaPredicted RBP29.36■■■□□ 2.29
GCDH-213ENST00000590627 DNMBPQ6XZF7 1577 aa29.34■■■□□ 2.29
GCDH-213ENST00000590627 EIF4G3O43432 1585 aaKnown RBP29.23■■■□□ 2.27
GCDH-213ENST00000590627 TARBP1Q13395 1621 aaKnown RBP29.19■■■□□ 2.26
GCDH-213ENST00000590627 RIMBP3CA6NJZ7 1639 aa29.14■■■□□ 2.26
GCDH-213ENST00000590627 RIMBP3BA6NNM3 1639 aa29.14■■■□□ 2.26
GCDH-213ENST00000590627 RIMBP3Q9UFD9 1639 aa29.14■■■□□ 2.26
GCDH-213ENST00000590627 POLA1P09884 1462 aaPredicted RBP29.13■■■□□ 2.25
GCDH-213ENST00000590627 AQRO60306 1485 aaKnown RBP eCLIP29.1■■■□□ 2.25
GCDH-213ENST00000590627 ARHGEF11O15085 1522 aa29.06■■■□□ 2.24
GCDH-213ENST00000590627 CHD1O14646 1710 aa29.01■■■□□ 2.23
GCDH-213ENST00000590627 SOGA1O94964 1423 aa28.99■■■□□ 2.23
GCDH-213ENST00000590627 RAD54L2Q9Y4B4 1467 aa28.98■■■□□ 2.23
GCDH-213ENST00000590627 WDR97A6NE52 1622 aa28.95■■■□□ 2.23
GCDH-213ENST00000590627 FGD5Q6ZNL6 1462 aa28.93■■■□□ 2.22
GCDH-213ENST00000590627 TDRD9Q8NDG6 1382 aaKnown RBP28.91■■■□□ 2.22
GCDH-213ENST00000590627 FBLN2P98095 1184 aa28.9■■■□□ 2.22
GCDH-213ENST00000590627 CUX1P39880 1505 aa28.89■■■□□ 2.22
GCDH-213ENST00000590627 SNAPC4Q5SXM2 1469 aa28.82■■■□□ 2.2
GCDH-213ENST00000590627 CYB5RLQ6IPT4 315 aa28.81■■■□□ 2.2
GCDH-213ENST00000590627 MAGI1Q96QZ7 1491 aaPredicted RBP28.78■■■□□ 2.2
GCDH-213ENST00000590627 GRIN2BQ13224 1484 aa28.77■■■□□ 2.2
GCDH-213ENST00000590627 ARAP1Q96P48 1450 aa28.76■■■□□ 2.19
GCDH-213ENST00000590627 CHMP7Q8WUX9 453 aaPredicted RBP28.71■■■□□ 2.19
GCDH-213ENST00000590627 CLASP1Q7Z460 1538 aa28.7■■■□□ 2.19
GCDH-213ENST00000590627 SYNJ1O43426 1573 aa28.7■■■□□ 2.18
GCDH-213ENST00000590627 SYNJ2O15056 1496 aa28.68■■■□□ 2.18
GCDH-213ENST00000590627 GAPVD1Q14C86 1478 aa28.65■■■□□ 2.18
GCDH-213ENST00000590627 PBRM1Q86U86 1689 aa28.64■■■□□ 2.17
GCDH-213ENST00000590627 ABCA10Q8WWZ4 1543 aa28.64■■■□□ 2.17
GCDH-213ENST00000590627 ABCA5Q8WWZ7 1642 aa28.59■■■□□ 2.17
GCDH-213ENST00000590627 WRNQ14191 1432 aaPredicted RBP eCLIP28.5■■■□□ 2.15
GCDH-213ENST00000590627 TRHP20396 242 aaPredicted RBP28.49■■■□□ 2.15
GCDH-213ENST00000590627 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
GCDH-213ENST00000590627 TOP2BQ02880 1626 aa28.46■■■□□ 2.15
GCDH-213ENST00000590627 GRIN2AQ12879 1464 aa28.39■■■□□ 2.13
GCDH-213ENST00000590627 ADAMTS12P58397 1594 aa28.37■■■□□ 2.13
GCDH-213ENST00000590627 NUP160Q12769 1436 aa28.31■■■□□ 2.12
GCDH-213ENST00000590627 FHAD1B1AJZ9 1412 aa28.29■■■□□ 2.12
GCDH-213ENST00000590627 ERICH3Q5RHP9 1530 aa28.28■■■□□ 2.12
GCDH-213ENST00000590627 CEP170Q5SW79 1584 aa28.28■■■□□ 2.12
GCDH-213ENST00000590627 ERCC6L2Q5T890 1561 aa28.2■■■□□ 2.11
GCDH-213ENST00000590627 SHROOM2Q13796 1616 aa28.19■■■□□ 2.1
GCDH-213ENST00000590627 CHIC1Q5VXU3 224 aa28.1■■■□□ 2.09
GCDH-213ENST00000590627 PRG4Q92954 1404 aaPredicted RBP28.01■■■□□ 2.07
GCDH-213ENST00000590627 JPH4Q96JJ6 628 aa27.99■■■□□ 2.07
GCDH-213ENST00000590627 RUSC2Q8N2Y8 1516 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms