RNA–Protein interactions for RNA: ENST00000590260.5

DDX39A-212, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 988 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-212ENST00000590260 NISCHQ9Y2I1 1504 aa44.92■■■■■ 4.78
DDX39A-212ENST00000590260 CCDC180Q9P1Z9 1646 aa39.98■■■■□ 3.99
DDX39A-212ENST00000590260 ABCC9O60706 1549 aa39.27■■■■□ 3.88
DDX39A-212ENST00000590260 RB1CC1Q8TDY2 1594 aa37.65■■■■□ 3.62
DDX39A-212ENST00000590260 NACADO15069 1562 aa37.59■■■■□ 3.61
DDX39A-212ENST00000590260 DCAF8L2P0C7V8 631 aa37.42■■■■□ 3.58
DDX39A-212ENST00000590260 ZCCHC6Q5VYS8 1495 aaKnown RBP37.41■■■■□ 3.58
DDX39A-212ENST00000590260 MYO15BQ96JP2 1530 aa37.33■■■■□ 3.57
DDX39A-212ENST00000590260 DCAF1Q9Y4B6 1507 aa37.13■■■■□ 3.53
DDX39A-212ENST00000590260 UNC13AQ9UPW8 1703 aa36.96■■■■□ 3.51
DDX39A-212ENST00000590260 BICRAQ9NZM4 1560 aa36.7■■■■□ 3.46
DDX39A-212ENST00000590260 PABPN1Q86U42 306 aaKnown RBP eCLIP36.66■■■■□ 3.46
DDX39A-212ENST00000590260 SCRIBQ14160 1630 aa36.49■■■■□ 3.43
DDX39A-212ENST00000590260 DNAJC5BQ9UF47 199 aa36.29■■■■□ 3.4
DDX39A-212ENST00000590260 SHROOM4Q9ULL8 1493 aa36.1■■■■□ 3.37
DDX39A-212ENST00000590260 EIF4G1Q04637 1599 aaKnown RBP35.64■■■■□ 3.3
DDX39A-212ENST00000590260 CC2D2AQ9P2K1 1620 aa35.54■■■■□ 3.28
DDX39A-212ENST00000590260 CECR2Q9BXF3 1484 aa35.27■■■■□ 3.24
DDX39A-212ENST00000590260 SMARCA4P51532 1647 aa34.9■■■■□ 3.18
DDX39A-212ENST00000590260 BAZ1AQ9NRL2 1556 aaPredicted RBP34.76■■■■□ 3.16
DDX39A-212ENST00000590260 ATAD2BQ9ULI0 1458 aa34.73■■■■□ 3.15
DDX39A-212ENST00000590260 NCAPD3P42695 1498 aa34.71■■■■□ 3.15
DDX39A-212ENST00000590260 MROH2BQ7Z745 1585 aa34.66■■■■□ 3.14
DDX39A-212ENST00000590260 SMARCA2P51531 1590 aa34.61■■■■□ 3.13
DDX39A-212ENST00000590260 PEG3Q9GZU2 1588 aa34.57■■■■□ 3.12
DDX39A-212ENST00000590260 HMGXB3Q12766 1538 aa34.53■■■■□ 3.12
DDX39A-212ENST00000590260 BAZ1BQ9UIG0 1483 aaKnown RBP34.38■■■■□ 3.09
DDX39A-212ENST00000590260 WIZO95785 1651 aa34.28■■■■□ 3.08
DDX39A-212ENST00000590260 RSF1Q96T23 1441 aaPredicted RBP34.18■■■■□ 3.06
DDX39A-212ENST00000590260 NESP48681 1621 aa34.01■■■■□ 3.03
DDX39A-212ENST00000590260 TOP2AP11388 1531 aaKnown RBP33.85■■■■□ 3.01
DDX39A-212ENST00000590260 LAMC3Q9Y6N6 1575 aa33.8■■■■□ 3
DDX39A-212ENST00000590260 ERCC6Q03468 1493 aa33.75■■■□□ 2.99
DDX39A-212ENST00000590260 CADPSQ9ULU8 1353 aa33.66■■■□□ 2.98
DDX39A-212ENST00000590260 KIF21AQ7Z4S6 1674 aa33.6■■■□□ 2.97
DDX39A-212ENST00000590260 THOC2Q8NI27 1593 aaKnown RBP33.53■■■□□ 2.96
DDX39A-212ENST00000590260 PDS5BQ9NTI5 1447 aa33.5■■■□□ 2.95
DDX39A-212ENST00000590260 CUX2O14529 1486 aa33.5■■■□□ 2.95
DDX39A-212ENST00000590260 CCDC88BA6NC98 1476 aa33.48■■■□□ 2.95
DDX39A-212ENST00000590260 CFTRP13569 1480 aa33.48■■■□□ 2.95
DDX39A-212ENST00000590260 FANCD2Q9BXW9 1451 aa33.29■■■□□ 2.92
DDX39A-212ENST00000590260 MRC2Q9UBG0 1479 aa33.25■■■□□ 2.91
DDX39A-212ENST00000590260 CEP164Q9UPV0 1460 aa33.24■■■□□ 2.91
DDX39A-212ENST00000590260 PRDM2Q13029 1718 aa33.22■■■□□ 2.91
DDX39A-212ENST00000590260 WDR62O43379 1518 aa33.18■■■□□ 2.9
DDX39A-212ENST00000590260 SUPT5HO00267 1087 aaKnown RBP33.08■■■□□ 2.89
DDX39A-212ENST00000590260 URB2Q14146 1524 aaKnown RBP33.05■■■□□ 2.88
DDX39A-212ENST00000590260 TOPBP1Q92547 1522 aa32.77■■■□□ 2.84
DDX39A-212ENST00000590260 DNMBPQ6XZF7 1577 aa32.71■■■□□ 2.83
DDX39A-212ENST00000590260 DNAJC5Q9H3Z4 198 aa32.66■■■□□ 2.82
DDX39A-212ENST00000590260 ABCC8Q09428 1581 aa32.64■■■□□ 2.82
DDX39A-212ENST00000590260 IFT140Q96RY7 1462 aa32.54■■■□□ 2.8
DDX39A-212ENST00000590260 CUX1P39880 1505 aa32.52■■■□□ 2.8
DDX39A-212ENST00000590260 ZNF608Q9ULD9 1512 aaPredicted RBP32.52■■■□□ 2.8
DDX39A-212ENST00000590260 POLA1P09884 1462 aaPredicted RBP32.49■■■□□ 2.79
DDX39A-212ENST00000590260 TARBP1Q13395 1621 aaKnown RBP32.49■■■□□ 2.79
DDX39A-212ENST00000590260 FGD5Q6ZNL6 1462 aa32.39■■■□□ 2.78
DDX39A-212ENST00000590260 RAD54L2Q9Y4B4 1467 aa32.38■■■□□ 2.77
DDX39A-212ENST00000590260 EIF4G3O43432 1585 aaKnown RBP32.36■■■□□ 2.77
DDX39A-212ENST00000590260 SOGA1O94964 1423 aa32.29■■■□□ 2.76
DDX39A-212ENST00000590260 AQRO60306 1485 aaKnown RBP eCLIP32.28■■■□□ 2.764e-7■■■■■ 56.8
DDX39A-212ENST00000590260 WDR97A6NE52 1622 aa32.21■■■□□ 2.75
DDX39A-212ENST00000590260 SYNJ1O43426 1573 aa32.2■■■□□ 2.75
DDX39A-212ENST00000590260 BIVM-ERCC5R4GMW8 1640 aa32.18■■■□□ 2.74
DDX39A-212ENST00000590260 TDRD9Q8NDG6 1382 aaKnown RBP32.17■■■□□ 2.74
DDX39A-212ENST00000590260 TOP2BQ02880 1626 aa32.16■■■□□ 2.74
DDX39A-212ENST00000590260 WRNQ14191 1432 aaPredicted RBP eCLIP32.16■■■□□ 2.743e-13■■■■■ 62.7
DDX39A-212ENST00000590260 ABCA10Q8WWZ4 1543 aa32.05■■■□□ 2.72
DDX39A-212ENST00000590260 OSCARQ8IYS5 282 aa32.02■■■□□ 2.72
DDX39A-212ENST00000590260 CHD1O14646 1710 aa31.99■■■□□ 2.71
DDX39A-212ENST00000590260 ABCA5Q8WWZ7 1642 aa31.99■■■□□ 2.71
DDX39A-212ENST00000590260 SNAPC4Q5SXM2 1469 aa31.96■■■□□ 2.71
DDX39A-212ENST00000590260 PBRM1Q86U86 1689 aa31.93■■■□□ 2.7
DDX39A-212ENST00000590260 GRIN2BQ13224 1484 aa31.93■■■□□ 2.7
DDX39A-212ENST00000590260 GAPVD1Q14C86 1478 aa31.93■■■□□ 2.7
DDX39A-212ENST00000590260 MAGI1Q96QZ7 1491 aaPredicted RBP31.86■■■□□ 2.69
DDX39A-212ENST00000590260 FBLN2P98095 1184 aa31.77■■■□□ 2.68
DDX39A-212ENST00000590260 SYNJ2O15056 1496 aa31.76■■■□□ 2.67
DDX39A-212ENST00000590260 RIMBP3CA6NJZ7 1639 aa31.67■■■□□ 2.66
DDX39A-212ENST00000590260 RIMBP3BA6NNM3 1639 aa31.67■■■□□ 2.66
DDX39A-212ENST00000590260 RIMBP3Q9UFD9 1639 aa31.67■■■□□ 2.66
DDX39A-212ENST00000590260 ADAMTS12P58397 1594 aa31.67■■■□□ 2.66
DDX39A-212ENST00000590260 CHMP7Q8WUX9 453 aaPredicted RBP31.66■■■□□ 2.66
DDX39A-212ENST00000590260 CLASP1Q7Z460 1538 aa31.65■■■□□ 2.66
DDX39A-212ENST00000590260 ERICH3Q5RHP9 1530 aa31.64■■■□□ 2.66
DDX39A-212ENST00000590260 ARHGEF11O15085 1522 aa31.62■■■□□ 2.65
DDX39A-212ENST00000590260 GRIN2AQ12879 1464 aa31.56■■■□□ 2.64
DDX39A-212ENST00000590260 FHAD1B1AJZ9 1412 aa31.54■■■□□ 2.64
DDX39A-212ENST00000590260 CEP170Q5SW79 1584 aa31.47■■■□□ 2.63
DDX39A-212ENST00000590260 TRIM41Q8WV44 630 aa31.47■■■□□ 2.63
DDX39A-212ENST00000590260 NUP160Q12769 1436 aa31.45■■■□□ 2.63
DDX39A-212ENST00000590260 KIF27Q86VH2 1401 aa31.45■■■□□ 2.63
DDX39A-212ENST00000590260 IGF1RP08069 1367 aa31.43■■■□□ 2.62
DDX39A-212ENST00000590260 ARAP1Q96P48 1450 aa31.4■■■□□ 2.62
DDX39A-212ENST00000590260 CUL7Q14999 1698 aa31.32■■■□□ 2.6
DDX39A-212ENST00000590260 RUSC2Q8N2Y8 1516 aa31.31■■■□□ 2.6
DDX39A-212ENST00000590260 ERCC6L2Q5T890 1561 aa31.27■■■□□ 2.6
DDX39A-212ENST00000590260 SHROOM2Q13796 1616 aa31.27■■■□□ 2.6
DDX39A-212ENST00000590260 CYB5RLQ6IPT4 315 aa31.25■■■□□ 2.59
DDX39A-212ENST00000590260 CARMIL1Q5VZK9 1371 aa31.18■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms