RNA–Protein interactions for RNA: ENST00000590098.1

PRKCSH-211, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 2

Gene PRKCSH, Length 795 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-211ENST00000590098 NISCHQ9Y2I1 1504 aa44.67■■■■■ 4.74
PRKCSH-211ENST00000590098 CCDC180Q9P1Z9 1646 aa40.05■■■■■ 4
PRKCSH-211ENST00000590098 ABCC9O60706 1549 aa40.03■■■■■ 4
PRKCSH-211ENST00000590098 RB1CC1Q8TDY2 1594 aa38.09■■■■□ 3.69
PRKCSH-211ENST00000590098 NACADO15069 1562 aa37.85■■■■□ 3.65
PRKCSH-211ENST00000590098 DCAF8L2P0C7V8 631 aa37.77■■■■□ 3.64
PRKCSH-211ENST00000590098 DNAJC5BQ9UF47 199 aa37.71■■■■□ 3.63
PRKCSH-211ENST00000590098 PABPN1Q86U42 306 aaKnown RBP eCLIP37.38■■■■□ 3.57
PRKCSH-211ENST00000590098 MYO15BQ96JP2 1530 aa37.34■■■■□ 3.57
PRKCSH-211ENST00000590098 UNC13AQ9UPW8 1703 aa37.22■■■■□ 3.55
PRKCSH-211ENST00000590098 ZCCHC6Q5VYS8 1495 aaKnown RBP37.02■■■■□ 3.52
PRKCSH-211ENST00000590098 BICRAQ9NZM4 1560 aa36.97■■■■□ 3.51
PRKCSH-211ENST00000590098 DCAF1Q9Y4B6 1507 aa36.9■■■■□ 3.5
PRKCSH-211ENST00000590098 SCRIBQ14160 1630 aa36.5■■■■□ 3.43
PRKCSH-211ENST00000590098 SHROOM4Q9ULL8 1493 aa36.47■■■■□ 3.43
PRKCSH-211ENST00000590098 CC2D2AQ9P2K1 1620 aa36.1■■■■□ 3.37
PRKCSH-211ENST00000590098 EIF4G1Q04637 1599 aaKnown RBP36.03■■■■□ 3.36
PRKCSH-211ENST00000590098 CECR2Q9BXF3 1484 aa36.02■■■■□ 3.36
PRKCSH-211ENST00000590098 NCAPD3P42695 1498 aa34.92■■■■□ 3.18
PRKCSH-211ENST00000590098 SMARCA4P51532 1647 aa34.83■■■■□ 3.17
PRKCSH-211ENST00000590098 ATAD2BQ9ULI0 1458 aa34.83■■■■□ 3.17
PRKCSH-211ENST00000590098 SMARCA2P51531 1590 aa34.77■■■■□ 3.16
PRKCSH-211ENST00000590098 BAZ1AQ9NRL2 1556 aaPredicted RBP34.69■■■■□ 3.14
PRKCSH-211ENST00000590098 HMGXB3Q12766 1538 aa34.66■■■■□ 3.14
PRKCSH-211ENST00000590098 BAZ1BQ9UIG0 1483 aaKnown RBP34.52■■■■□ 3.12
PRKCSH-211ENST00000590098 ERCC6Q03468 1493 aa34.52■■■■□ 3.12
PRKCSH-211ENST00000590098 DNAJC5Q9H3Z4 198 aa34.5■■■■□ 3.11
PRKCSH-211ENST00000590098 PEG3Q9GZU2 1588 aa34.47■■■■□ 3.11
PRKCSH-211ENST00000590098 NESP48681 1621 aa34.42■■■■□ 3.1
PRKCSH-211ENST00000590098 MROH2BQ7Z745 1585 aa34.41■■■■□ 3.1
PRKCSH-211ENST00000590098 CUX2O14529 1486 aa34.38■■■■□ 3.09
PRKCSH-211ENST00000590098 LAMC3Q9Y6N6 1575 aa34.14■■■■□ 3.06
PRKCSH-211ENST00000590098 WIZO95785 1651 aa34.03■■■■□ 3.04
PRKCSH-211ENST00000590098 PDS5BQ9NTI5 1447 aa33.96■■■■□ 3.03
PRKCSH-211ENST00000590098 THOC2Q8NI27 1593 aaKnown RBP33.94■■■■□ 3.02
PRKCSH-211ENST00000590098 KIF21AQ7Z4S6 1674 aa33.91■■■■□ 3.02
PRKCSH-211ENST00000590098 CADPSQ9ULU8 1353 aa33.88■■■■□ 3.01
PRKCSH-211ENST00000590098 RSF1Q96T23 1441 aaPredicted RBP33.75■■■□□ 2.99
PRKCSH-211ENST00000590098 MRC2Q9UBG0 1479 aa33.63■■■□□ 2.97
PRKCSH-211ENST00000590098 TOP2AP11388 1531 aaKnown RBP33.59■■■□□ 2.97
PRKCSH-211ENST00000590098 CEP164Q9UPV0 1460 aa33.53■■■□□ 2.96
PRKCSH-211ENST00000590098 WDR62O43379 1518 aa33.52■■■□□ 2.96
PRKCSH-211ENST00000590098 CFTRP13569 1480 aa33.5■■■□□ 2.95
PRKCSH-211ENST00000590098 FANCD2Q9BXW9 1451 aa33.49■■■□□ 2.95
PRKCSH-211ENST00000590098 CCDC88BA6NC98 1476 aa33.22■■■□□ 2.91
PRKCSH-211ENST00000590098 URB2Q14146 1524 aaKnown RBP33.22■■■□□ 2.91
PRKCSH-211ENST00000590098 PRDM2Q13029 1718 aa33.22■■■□□ 2.91
PRKCSH-211ENST00000590098 TRIM41Q8WV44 630 aa33.01■■■□□ 2.87
PRKCSH-211ENST00000590098 OSCARQ8IYS5 282 aa32.94■■■□□ 2.86
PRKCSH-211ENST00000590098 TOPBP1Q92547 1522 aa32.86■■■□□ 2.85
PRKCSH-211ENST00000590098 IFT140Q96RY7 1462 aa32.85■■■□□ 2.85
PRKCSH-211ENST00000590098 ABCC8Q09428 1581 aa32.84■■■□□ 2.85
PRKCSH-211ENST00000590098 ZNF608Q9ULD9 1512 aaPredicted RBP32.84■■■□□ 2.85
PRKCSH-211ENST00000590098 DNMBPQ6XZF7 1577 aa32.76■■■□□ 2.84
PRKCSH-211ENST00000590098 EIF4G3O43432 1585 aaKnown RBP32.6■■■□□ 2.81
PRKCSH-211ENST00000590098 AQRO60306 1485 aaKnown RBP eCLIP32.56■■■□□ 2.87e-7■■□□□ 13.8
PRKCSH-211ENST00000590098 TARBP1Q13395 1621 aaKnown RBP32.55■■■□□ 2.8
PRKCSH-211ENST00000590098 POLA1P09884 1462 aaPredicted RBP32.53■■■□□ 2.8
PRKCSH-211ENST00000590098 RAD54L2Q9Y4B4 1467 aa32.46■■■□□ 2.79
PRKCSH-211ENST00000590098 RIMBP3CA6NJZ7 1639 aa32.42■■■□□ 2.78
PRKCSH-211ENST00000590098 RIMBP3BA6NNM3 1639 aa32.42■■■□□ 2.78
PRKCSH-211ENST00000590098 RIMBP3Q9UFD9 1639 aa32.42■■■□□ 2.78
PRKCSH-211ENST00000590098 SOGA1O94964 1423 aa32.42■■■□□ 2.78
PRKCSH-211ENST00000590098 SUPT5HO00267 1087 aaKnown RBP32.4■■■□□ 2.78
PRKCSH-211ENST00000590098 TDRD9Q8NDG6 1382 aaKnown RBP32.38■■■□□ 2.77
PRKCSH-211ENST00000590098 CHD1O14646 1710 aa32.36■■■□□ 2.77
PRKCSH-211ENST00000590098 FBLN2P98095 1184 aa32.35■■■□□ 2.77
PRKCSH-211ENST00000590098 FGD5Q6ZNL6 1462 aa32.35■■■□□ 2.77
PRKCSH-211ENST00000590098 ARHGEF11O15085 1522 aa32.34■■■□□ 2.77
PRKCSH-211ENST00000590098 CUX1P39880 1505 aa32.33■■■□□ 2.77
PRKCSH-211ENST00000590098 WDR97A6NE52 1622 aa32.26■■■□□ 2.76
PRKCSH-211ENST00000590098 CYB5RLQ6IPT4 315 aa32.22■■■□□ 2.75
PRKCSH-211ENST00000590098 SNAPC4Q5SXM2 1469 aa32.16■■■□□ 2.74
PRKCSH-211ENST00000590098 GRIN2BQ13224 1484 aa32.11■■■□□ 2.73
PRKCSH-211ENST00000590098 CHMP7Q8WUX9 453 aaPredicted RBP32.1■■■□□ 2.73
PRKCSH-211ENST00000590098 MAGI1Q96QZ7 1491 aaPredicted RBP32.1■■■□□ 2.73
PRKCSH-211ENST00000590098 ARAP1Q96P48 1450 aa32.04■■■□□ 2.72
PRKCSH-211ENST00000590098 GAPVD1Q14C86 1478 aa32.02■■■□□ 2.72
PRKCSH-211ENST00000590098 PBRM1Q86U86 1689 aa32.01■■■□□ 2.71
PRKCSH-211ENST00000590098 SYNJ1O43426 1573 aa31.99■■■□□ 2.71
PRKCSH-211ENST00000590098 SYNJ2O15056 1496 aa31.99■■■□□ 2.71
PRKCSH-211ENST00000590098 ABCA10Q8WWZ4 1543 aa31.98■■■□□ 2.71
PRKCSH-211ENST00000590098 CLASP1Q7Z460 1538 aa31.95■■■□□ 2.7
PRKCSH-211ENST00000590098 ABCA5Q8WWZ7 1642 aa31.92■■■□□ 2.7
PRKCSH-211ENST00000590098 WRNQ14191 1432 aaPredicted RBP eCLIP31.92■■■□□ 2.7
PRKCSH-211ENST00000590098 TOP2BQ02880 1626 aa31.86■■■□□ 2.69
PRKCSH-211ENST00000590098 BIVM-ERCC5R4GMW8 1640 aa31.86■■■□□ 2.69
PRKCSH-211ENST00000590098 TRHP20396 242 aaPredicted RBP31.81■■■□□ 2.68
PRKCSH-211ENST00000590098 GRIN2AQ12879 1464 aa31.69■■■□□ 2.66
PRKCSH-211ENST00000590098 ADAMTS12P58397 1594 aa31.68■■■□□ 2.66
PRKCSH-211ENST00000590098 FHAD1B1AJZ9 1412 aa31.61■■■□□ 2.65
PRKCSH-211ENST00000590098 ERICH3Q5RHP9 1530 aa31.6■■■□□ 2.65
PRKCSH-211ENST00000590098 NUP160Q12769 1436 aa31.56■■■□□ 2.64
PRKCSH-211ENST00000590098 CEP170Q5SW79 1584 aa31.56■■■□□ 2.64
PRKCSH-211ENST00000590098 ERCC6L2Q5T890 1561 aa31.55■■■□□ 2.64
PRKCSH-211ENST00000590098 SHROOM2Q13796 1616 aa31.41■■■□□ 2.62
PRKCSH-211ENST00000590098 JPH4Q96JJ6 628 aa31.32■■■□□ 2.6
PRKCSH-211ENST00000590098 PRG4Q92954 1404 aaPredicted RBP31.28■■■□□ 2.6
PRKCSH-211ENST00000590098 KIF27Q86VH2 1401 aa31.27■■■□□ 2.6
PRKCSH-211ENST00000590098 IGF1RP08069 1367 aa31.23■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 219.9 ms