RNA–Protein interactions for RNA: ENST00000590034.2

SF3A2-205, Transcript of splicing factor 3a subunit 2, humanhuman

TSL 3

Gene SF3A2, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A2-205ENST00000590034 NISCHQ9Y2I1 1504 aa35.31■■■■□ 3.24
SF3A2-205ENST00000590034 ABCC9O60706 1549 aa31.85■■■□□ 2.69
SF3A2-205ENST00000590034 CCDC180Q9P1Z9 1646 aa31.75■■■□□ 2.67
SF3A2-205ENST00000590034 RB1CC1Q8TDY2 1594 aa30.24■■■□□ 2.43
SF3A2-205ENST00000590034 NACADO15069 1562 aa30.01■■■□□ 2.39
SF3A2-205ENST00000590034 DNAJC5BQ9UF47 199 aa30■■■□□ 2.39
SF3A2-205ENST00000590034 DCAF8L2P0C7V8 631 aa29.75■■■□□ 2.35
SF3A2-205ENST00000590034 UNC13AQ9UPW8 1703 aa29.68■■■□□ 2.34
SF3A2-205ENST00000590034 PABPN1Q86U42 306 aaKnown RBP eCLIP29.61■■■□□ 2.33
SF3A2-205ENST00000590034 MYO15BQ96JP2 1530 aa29.55■■■□□ 2.32
SF3A2-205ENST00000590034 BICRAQ9NZM4 1560 aa29.45■■■□□ 2.31
SF3A2-205ENST00000590034 ZCCHC6Q5VYS8 1495 aaKnown RBP29.26■■■□□ 2.27
SF3A2-205ENST00000590034 DCAF1Q9Y4B6 1507 aa29.15■■■□□ 2.26
SF3A2-205ENST00000590034 SHROOM4Q9ULL8 1493 aa28.95■■■□□ 2.22
SF3A2-205ENST00000590034 SCRIBQ14160 1630 aa28.94■■■□□ 2.22
SF3A2-205ENST00000590034 CC2D2AQ9P2K1 1620 aa28.79■■■□□ 2.2
SF3A2-205ENST00000590034 EIF4G1Q04637 1599 aaKnown RBP28.7■■■□□ 2.18
SF3A2-205ENST00000590034 CECR2Q9BXF3 1484 aa28.69■■■□□ 2.18
SF3A2-205ENST00000590034 NCAPD3P42695 1498 aa27.7■■■□□ 2.03
SF3A2-205ENST00000590034 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
SF3A2-205ENST00000590034 SMARCA4P51532 1647 aa27.59■■■□□ 2.01
SF3A2-205ENST00000590034 DNAJC5Q9H3Z4 198 aa27.57■■■□□ 2
SF3A2-205ENST00000590034 SMARCA2P51531 1590 aa27.52■■■□□ 2
SF3A2-205ENST00000590034 HMGXB3Q12766 1538 aa27.51■■■□□ 2
SF3A2-205ENST00000590034 CUX2O14529 1486 aa27.47■■□□□ 1.99
SF3A2-205ENST00000590034 ERCC6Q03468 1493 aa27.46■■□□□ 1.99
SF3A2-205ENST00000590034 BAZ1AQ9NRL2 1556 aaPredicted RBP27.39■■□□□ 1.98
SF3A2-205ENST00000590034 NESP48681 1621 aa27.36■■□□□ 1.97
SF3A2-205ENST00000590034 BAZ1BQ9UIG0 1483 aaKnown RBP27.33■■□□□ 1.97
SF3A2-205ENST00000590034 PEG3Q9GZU2 1588 aa27.32■■□□□ 1.96
SF3A2-205ENST00000590034 MROH2BQ7Z745 1585 aa27.22■■□□□ 1.95
SF3A2-205ENST00000590034 THOC2Q8NI27 1593 aaKnown RBP27.13■■□□□ 1.93
SF3A2-205ENST00000590034 LAMC3Q9Y6N6 1575 aa27.1■■□□□ 1.93
SF3A2-205ENST00000590034 KIF21AQ7Z4S6 1674 aa27.03■■□□□ 1.92
SF3A2-205ENST00000590034 WIZO95785 1651 aa26.92■■□□□ 1.9
SF3A2-205ENST00000590034 PDS5BQ9NTI5 1447 aa26.9■■□□□ 1.9
SF3A2-205ENST00000590034 CADPSQ9ULU8 1353 aa26.84■■□□□ 1.89
SF3A2-205ENST00000590034 MRC2Q9UBG0 1479 aa26.73■■□□□ 1.87
SF3A2-205ENST00000590034 WDR62O43379 1518 aa26.7■■□□□ 1.87
SF3A2-205ENST00000590034 RSF1Q96T23 1441 aaPredicted RBP26.59■■□□□ 1.85
SF3A2-205ENST00000590034 CEP164Q9UPV0 1460 aa26.59■■□□□ 1.85
SF3A2-205ENST00000590034 FANCD2Q9BXW9 1451 aa26.55■■□□□ 1.84
SF3A2-205ENST00000590034 CFTRP13569 1480 aa26.54■■□□□ 1.84
SF3A2-205ENST00000590034 TOP2AP11388 1531 aaKnown RBP26.53■■□□□ 1.84
SF3A2-205ENST00000590034 URB2Q14146 1524 aaKnown RBP26.39■■□□□ 1.81
SF3A2-205ENST00000590034 PRDM2Q13029 1718 aa26.32■■□□□ 1.8
SF3A2-205ENST00000590034 TRIM41Q8WV44 630 aa26.3■■□□□ 1.8
SF3A2-205ENST00000590034 CCDC88BA6NC98 1476 aa26.23■■□□□ 1.79
SF3A2-205ENST00000590034 OSCARQ8IYS5 282 aa26.14■■□□□ 1.78
SF3A2-205ENST00000590034 ZNF608Q9ULD9 1512 aaPredicted RBP26.09■■□□□ 1.77
SF3A2-205ENST00000590034 TOPBP1Q92547 1522 aa26.06■■□□□ 1.76
SF3A2-205ENST00000590034 IFT140Q96RY7 1462 aa26.05■■□□□ 1.76
SF3A2-205ENST00000590034 DNMBPQ6XZF7 1577 aa25.95■■□□□ 1.75
SF3A2-205ENST00000590034 EIF4G3O43432 1585 aaKnown RBP25.94■■□□□ 1.74
SF3A2-205ENST00000590034 RIMBP3CA6NJZ7 1639 aa25.92■■□□□ 1.74
SF3A2-205ENST00000590034 RIMBP3BA6NNM3 1639 aa25.92■■□□□ 1.74
SF3A2-205ENST00000590034 RIMBP3Q9UFD9 1639 aa25.92■■□□□ 1.74
SF3A2-205ENST00000590034 ABCC8Q09428 1581 aa25.92■■□□□ 1.74
SF3A2-205ENST00000590034 TARBP1Q13395 1621 aaKnown RBP25.87■■□□□ 1.73
SF3A2-205ENST00000590034 ARHGEF11O15085 1522 aa25.82■■□□□ 1.72
SF3A2-205ENST00000590034 AQRO60306 1485 aaKnown RBP eCLIP25.79■■□□□ 1.722e-9■■■■■ 35.8
SF3A2-205ENST00000590034 POLA1P09884 1462 aaPredicted RBP25.79■■□□□ 1.72
SF3A2-205ENST00000590034 CHD1O14646 1710 aa25.79■■□□□ 1.72
SF3A2-205ENST00000590034 RAD54L2Q9Y4B4 1467 aa25.7■■□□□ 1.7
SF3A2-205ENST00000590034 SOGA1O94964 1423 aa25.62■■□□□ 1.69
SF3A2-205ENST00000590034 FGD5Q6ZNL6 1462 aa25.61■■□□□ 1.69
SF3A2-205ENST00000590034 TDRD9Q8NDG6 1382 aaKnown RBP25.6■■□□□ 1.69
SF3A2-205ENST00000590034 CUX1P39880 1505 aa25.59■■□□□ 1.69
SF3A2-205ENST00000590034 FBLN2P98095 1184 aa25.57■■□□□ 1.68
SF3A2-205ENST00000590034 ARAP1Q96P48 1450 aa25.57■■□□□ 1.68
SF3A2-205ENST00000590034 CYB5RLQ6IPT4 315 aa25.56■■□□□ 1.68
SF3A2-205ENST00000590034 WDR97A6NE52 1622 aa25.54■■□□□ 1.68
SF3A2-205ENST00000590034 SNAPC4Q5SXM2 1469 aa25.53■■□□□ 1.68
SF3A2-205ENST00000590034 CLASP1Q7Z460 1538 aa25.47■■□□□ 1.67
SF3A2-205ENST00000590034 MAGI1Q96QZ7 1491 aaPredicted RBP25.44■■□□□ 1.66
SF3A2-205ENST00000590034 GRIN2BQ13224 1484 aa25.42■■□□□ 1.66
SF3A2-205ENST00000590034 SYNJ1O43426 1573 aa25.39■■□□□ 1.65
SF3A2-205ENST00000590034 PBRM1Q86U86 1689 aa25.39■■□□□ 1.65
SF3A2-205ENST00000590034 SYNJ2O15056 1496 aa25.36■■□□□ 1.65
SF3A2-205ENST00000590034 CHMP7Q8WUX9 453 aaPredicted RBP25.36■■□□□ 1.65
SF3A2-205ENST00000590034 GAPVD1Q14C86 1478 aa25.33■■□□□ 1.65
SF3A2-205ENST00000590034 ABCA5Q8WWZ7 1642 aa25.32■■□□□ 1.64
SF3A2-205ENST00000590034 ABCA10Q8WWZ4 1543 aa25.3■■□□□ 1.64
SF3A2-205ENST00000590034 TRHP20396 242 aaPredicted RBP25.27■■□□□ 1.64
SF3A2-205ENST00000590034 SUPT5HO00267 1087 aaKnown RBP25.26■■□□□ 1.63
SF3A2-205ENST00000590034 BIVM-ERCC5R4GMW8 1640 aa25.15■■□□□ 1.62
SF3A2-205ENST00000590034 WRNQ14191 1432 aaPredicted RBP eCLIP25.13■■□□□ 1.61
SF3A2-205ENST00000590034 TOP2BQ02880 1626 aa25.13■■□□□ 1.61
SF3A2-205ENST00000590034 ADAMTS12P58397 1594 aa25.13■■□□□ 1.61
SF3A2-205ENST00000590034 GRIN2AQ12879 1464 aa25.12■■□□□ 1.61
SF3A2-205ENST00000590034 ERCC6L2Q5T890 1561 aa25.1■■□□□ 1.61
SF3A2-205ENST00000590034 CEP170Q5SW79 1584 aa25.08■■□□□ 1.61
SF3A2-205ENST00000590034 NUP160Q12769 1436 aa25.05■■□□□ 1.6
SF3A2-205ENST00000590034 SHROOM2Q13796 1616 aa24.98■■□□□ 1.59
SF3A2-205ENST00000590034 FHAD1B1AJZ9 1412 aa24.98■■□□□ 1.59
SF3A2-205ENST00000590034 ERICH3Q5RHP9 1530 aa24.97■■□□□ 1.59
SF3A2-205ENST00000590034 RUSC2Q8N2Y8 1516 aa24.79■■□□□ 1.56
SF3A2-205ENST00000590034 PRG4Q92954 1404 aaPredicted RBP24.78■■□□□ 1.56
SF3A2-205ENST00000590034 KIF13AQ9H1H9 1805 aa24.73■■□□□ 1.55
SF3A2-205ENST00000590034 JPH4Q96JJ6 628 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms