RNA–Protein interactions for RNA: ENST00000589990.1

PRKCSH-210, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 2

Gene PRKCSH, Length 567 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-210ENST00000589990 NISCHQ9Y2I1 1504 aa32.89■■■□□ 2.86
PRKCSH-210ENST00000589990 ABCC9O60706 1549 aa30.26■■■□□ 2.43
PRKCSH-210ENST00000589990 CCDC180Q9P1Z9 1646 aa29.67■■■□□ 2.34
PRKCSH-210ENST00000589990 DNAJC5BQ9UF47 199 aa28.89■■■□□ 2.22
PRKCSH-210ENST00000589990 RB1CC1Q8TDY2 1594 aa28.47■■■□□ 2.15
PRKCSH-210ENST00000589990 NACADO15069 1562 aa28.15■■■□□ 2.1
PRKCSH-210ENST00000589990 PABPN1Q86U42 306 aaKnown RBP eCLIP28.11■■■□□ 2.09
PRKCSH-210ENST00000589990 DCAF8L2P0C7V8 631 aa28■■■□□ 2.07
PRKCSH-210ENST00000589990 UNC13AQ9UPW8 1703 aa27.95■■■□□ 2.07
PRKCSH-210ENST00000589990 BICRAQ9NZM4 1560 aa27.78■■■□□ 2.04
PRKCSH-210ENST00000589990 MYO15BQ96JP2 1530 aa27.56■■■□□ 2
PRKCSH-210ENST00000589990 CC2D2AQ9P2K1 1620 aa27.28■■□□□ 1.96
PRKCSH-210ENST00000589990 CECR2Q9BXF3 1484 aa27.25■■□□□ 1.95
PRKCSH-210ENST00000589990 ZCCHC6Q5VYS8 1495 aaKnown RBP27.16■■□□□ 1.94
PRKCSH-210ENST00000589990 SHROOM4Q9ULL8 1493 aa27.14■■□□□ 1.94
PRKCSH-210ENST00000589990 SCRIBQ14160 1630 aa27.12■■□□□ 1.93
PRKCSH-210ENST00000589990 EIF4G1Q04637 1599 aaKnown RBP27.09■■□□□ 1.93
PRKCSH-210ENST00000589990 DCAF1Q9Y4B6 1507 aa27.06■■□□□ 1.92
PRKCSH-210ENST00000589990 DNAJC5Q9H3Z4 198 aa26.73■■□□□ 1.87
PRKCSH-210ENST00000589990 CUX2O14529 1486 aa26.15■■□□□ 1.78
PRKCSH-210ENST00000589990 ERCC6Q03468 1493 aa26.07■■□□□ 1.76
PRKCSH-210ENST00000589990 NCAPD3P42695 1498 aa26.02■■□□□ 1.76
PRKCSH-210ENST00000589990 ATAD2BQ9ULI0 1458 aa25.91■■□□□ 1.74
PRKCSH-210ENST00000589990 NESP48681 1621 aa25.89■■□□□ 1.74
PRKCSH-210ENST00000589990 HMGXB3Q12766 1538 aa25.78■■□□□ 1.72
PRKCSH-210ENST00000589990 SMARCA4P51532 1647 aa25.77■■□□□ 1.72
PRKCSH-210ENST00000589990 SMARCA2P51531 1590 aa25.74■■□□□ 1.71
PRKCSH-210ENST00000589990 THOC2Q8NI27 1593 aaKnown RBP25.68■■□□□ 1.7
PRKCSH-210ENST00000589990 BAZ1BQ9UIG0 1483 aaKnown RBP25.61■■□□□ 1.69
PRKCSH-210ENST00000589990 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
PRKCSH-210ENST00000589990 KIF21AQ7Z4S6 1674 aa25.52■■□□□ 1.68
PRKCSH-210ENST00000589990 LAMC3Q9Y6N6 1575 aa25.49■■□□□ 1.67
PRKCSH-210ENST00000589990 PEG3Q9GZU2 1588 aa25.48■■□□□ 1.67
PRKCSH-210ENST00000589990 TRIM41Q8WV44 630 aa25.43■■□□□ 1.66
PRKCSH-210ENST00000589990 MROH2BQ7Z745 1585 aa25.4■■□□□ 1.66
PRKCSH-210ENST00000589990 PDS5BQ9NTI5 1447 aa25.33■■□□□ 1.65
PRKCSH-210ENST00000589990 MRC2Q9UBG0 1479 aa25.21■■□□□ 1.63
PRKCSH-210ENST00000589990 CADPSQ9ULU8 1353 aa25.2■■□□□ 1.63
PRKCSH-210ENST00000589990 WDR62O43379 1518 aa25.17■■□□□ 1.62
PRKCSH-210ENST00000589990 WIZO95785 1651 aa25.08■■□□□ 1.61
PRKCSH-210ENST00000589990 CEP164Q9UPV0 1460 aa25■■□□□ 1.59
PRKCSH-210ENST00000589990 FANCD2Q9BXW9 1451 aa24.96■■□□□ 1.59
PRKCSH-210ENST00000589990 OSCARQ8IYS5 282 aa24.88■■□□□ 1.57
PRKCSH-210ENST00000589990 CFTRP13569 1480 aa24.83■■□□□ 1.57
PRKCSH-210ENST00000589990 URB2Q14146 1524 aaKnown RBP24.83■■□□□ 1.57
PRKCSH-210ENST00000589990 RIMBP3CA6NJZ7 1639 aa24.71■■□□□ 1.55
PRKCSH-210ENST00000589990 RIMBP3BA6NNM3 1639 aa24.71■■□□□ 1.55
PRKCSH-210ENST00000589990 RIMBP3Q9UFD9 1639 aa24.71■■□□□ 1.55
PRKCSH-210ENST00000589990 RSF1Q96T23 1441 aaPredicted RBP24.66■■□□□ 1.54
PRKCSH-210ENST00000589990 TOP2AP11388 1531 aaKnown RBP24.66■■□□□ 1.54
PRKCSH-210ENST00000589990 ZNF608Q9ULD9 1512 aaPredicted RBP24.63■■□□□ 1.53
PRKCSH-210ENST00000589990 ARHGEF11O15085 1522 aa24.56■■□□□ 1.52
PRKCSH-210ENST00000589990 PRDM2Q13029 1718 aa24.54■■□□□ 1.52
PRKCSH-210ENST00000589990 IFT140Q96RY7 1462 aa24.5■■□□□ 1.51
PRKCSH-210ENST00000589990 TOPBP1Q92547 1522 aa24.45■■□□□ 1.5
PRKCSH-210ENST00000589990 CCDC88BA6NC98 1476 aa24.43■■□□□ 1.5
PRKCSH-210ENST00000589990 EIF4G3O43432 1585 aaKnown RBP24.42■■□□□ 1.5
PRKCSH-210ENST00000589990 CYB5RLQ6IPT4 315 aa24.41■■□□□ 1.5
PRKCSH-210ENST00000589990 CHD1O14646 1710 aa24.35■■□□□ 1.49
PRKCSH-210ENST00000589990 AQRO60306 1485 aaKnown RBP eCLIP24.32■■□□□ 1.48
PRKCSH-210ENST00000589990 ARAP1Q96P48 1450 aa24.32■■□□□ 1.48
PRKCSH-210ENST00000589990 DNMBPQ6XZF7 1577 aa24.29■■□□□ 1.48
PRKCSH-210ENST00000589990 TARBP1Q13395 1621 aaKnown RBP24.28■■□□□ 1.48
PRKCSH-210ENST00000589990 TRHP20396 242 aaPredicted RBP24.26■■□□□ 1.47
PRKCSH-210ENST00000589990 ABCC8Q09428 1581 aa24.22■■□□□ 1.47
PRKCSH-210ENST00000589990 FBLN2P98095 1184 aa24.21■■□□□ 1.47
PRKCSH-210ENST00000589990 POLA1P09884 1462 aaPredicted RBP24.17■■□□□ 1.46
PRKCSH-210ENST00000589990 RAD54L2Q9Y4B4 1467 aa24.14■■□□□ 1.46
PRKCSH-210ENST00000589990 TDRD9Q8NDG6 1382 aaKnown RBP24.09■■□□□ 1.45
PRKCSH-210ENST00000589990 CLASP1Q7Z460 1538 aa24.04■■□□□ 1.44
PRKCSH-210ENST00000589990 SNAPC4Q5SXM2 1469 aa24.03■■□□□ 1.44
PRKCSH-210ENST00000589990 SOGA1O94964 1423 aa24.01■■□□□ 1.43
PRKCSH-210ENST00000589990 FGD5Q6ZNL6 1462 aa23.95■■□□□ 1.42
PRKCSH-210ENST00000589990 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
PRKCSH-210ENST00000589990 CHMP7Q8WUX9 453 aaPredicted RBP23.9■■□□□ 1.42
PRKCSH-210ENST00000589990 CUX1P39880 1505 aa23.89■■□□□ 1.41
PRKCSH-210ENST00000589990 MAGI1Q96QZ7 1491 aaPredicted RBP23.87■■□□□ 1.41
PRKCSH-210ENST00000589990 WDR97A6NE52 1622 aa23.85■■□□□ 1.41
PRKCSH-210ENST00000589990 AEBP2Q6ZN18 517 aaPredicted RBP23.85■■□□□ 1.41
PRKCSH-210ENST00000589990 GRIN2BQ13224 1484 aa23.84■■□□□ 1.41
PRKCSH-210ENST00000589990 SYNJ2O15056 1496 aa23.82■■□□□ 1.4
PRKCSH-210ENST00000589990 GAPVD1Q14C86 1478 aa23.79■■□□□ 1.4
PRKCSH-210ENST00000589990 PBRM1Q86U86 1689 aa23.77■■□□□ 1.4
PRKCSH-210ENST00000589990 ERCC6L2Q5T890 1561 aa23.73■■□□□ 1.39
PRKCSH-210ENST00000589990 ABCA5Q8WWZ7 1642 aa23.66■■□□□ 1.38
PRKCSH-210ENST00000589990 ABCA10Q8WWZ4 1543 aa23.61■■□□□ 1.37
PRKCSH-210ENST00000589990 GRIN2AQ12879 1464 aa23.57■■□□□ 1.36
PRKCSH-210ENST00000589990 CEP170Q5SW79 1584 aa23.56■■□□□ 1.36
PRKCSH-210ENST00000589990 ADAMTS12P58397 1594 aa23.52■■□□□ 1.36
PRKCSH-210ENST00000589990 NUP160Q12769 1436 aa23.5■■□□□ 1.35
PRKCSH-210ENST00000589990 SHROOM2Q13796 1616 aa23.47■■□□□ 1.35
PRKCSH-210ENST00000589990 KIF13AQ9H1H9 1805 aa23.46■■□□□ 1.35
PRKCSH-210ENST00000589990 WRNQ14191 1432 aaPredicted RBP eCLIP23.39■■□□□ 1.33
PRKCSH-210ENST00000589990 FHAD1B1AJZ9 1412 aa23.37■■□□□ 1.33
PRKCSH-210ENST00000589990 BIVM-ERCC5R4GMW8 1640 aa23.33■■□□□ 1.32
PRKCSH-210ENST00000589990 PRG4Q92954 1404 aaPredicted RBP23.33■■□□□ 1.32
PRKCSH-210ENST00000589990 TOP2BQ02880 1626 aa23.31■■□□□ 1.32
PRKCSH-210ENST00000589990 ERICH3Q5RHP9 1530 aa23.28■■□□□ 1.32
PRKCSH-210ENST00000589990 SUPT5HO00267 1087 aaKnown RBP23.24■■□□□ 1.31
PRKCSH-210ENST00000589990 JPH4Q96JJ6 628 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms