RNA–Protein interactions for RNA: ENST00000589709.1

VAT1-206, Transcript of vesicle amine transport 1, humanhuman

TSL 4

Gene VAT1, Length 570 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-206ENST00000589709 NISCHQ9Y2I1 1504 aa30.42■■■□□ 2.46
VAT1-206ENST00000589709 CCDC180Q9P1Z9 1646 aa27.19■■□□□ 1.94
VAT1-206ENST00000589709 ABCC9O60706 1549 aa27.06■■□□□ 1.92
VAT1-206ENST00000589709 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
VAT1-206ENST00000589709 NACADO15069 1562 aa25.73■■□□□ 1.71
VAT1-206ENST00000589709 DCAF8L2P0C7V8 631 aa25.6■■□□□ 1.69
VAT1-206ENST00000589709 MYO15BQ96JP2 1530 aa25.47■■□□□ 1.67
VAT1-206ENST00000589709 DNAJC5BQ9UF47 199 aa25.32■■□□□ 1.64
VAT1-206ENST00000589709 PABPN1Q86U42 306 aaKnown RBP eCLIP25.24■■□□□ 1.63
VAT1-206ENST00000589709 ZCCHC6Q5VYS8 1495 aaKnown RBP25.21■■□□□ 1.63
VAT1-206ENST00000589709 DCAF1Q9Y4B6 1507 aa25.17■■□□□ 1.62
VAT1-206ENST00000589709 UNC13AQ9UPW8 1703 aa25.16■■□□□ 1.62
VAT1-206ENST00000589709 BICRAQ9NZM4 1560 aa25.07■■□□□ 1.6
VAT1-206ENST00000589709 SHROOM4Q9ULL8 1493 aa24.82■■□□□ 1.56
VAT1-206ENST00000589709 SCRIBQ14160 1630 aa24.74■■□□□ 1.55
VAT1-206ENST00000589709 CC2D2AQ9P2K1 1620 aa24.45■■□□□ 1.5
VAT1-206ENST00000589709 EIF4G1Q04637 1599 aaKnown RBP24.45■■□□□ 1.5
VAT1-206ENST00000589709 CECR2Q9BXF3 1484 aa24.39■■□□□ 1.5
VAT1-206ENST00000589709 NCAPD3P42695 1498 aa23.78■■□□□ 1.4
VAT1-206ENST00000589709 ATAD2BQ9ULI0 1458 aa23.69■■□□□ 1.38
VAT1-206ENST00000589709 SMARCA4P51532 1647 aa23.66■■□□□ 1.38
VAT1-206ENST00000589709 SMARCA2P51531 1590 aa23.62■■□□□ 1.37
VAT1-206ENST00000589709 BAZ1AQ9NRL2 1556 aaPredicted RBP23.59■■□□□ 1.37
VAT1-206ENST00000589709 HMGXB3Q12766 1538 aa23.57■■□□□ 1.36
VAT1-206ENST00000589709 PEG3Q9GZU2 1588 aa23.48■■□□□ 1.35
VAT1-206ENST00000589709 BAZ1BQ9UIG0 1483 aaKnown RBP23.44■■□□□ 1.34
VAT1-206ENST00000589709 MROH2BQ7Z745 1585 aa23.41■■□□□ 1.34
VAT1-206ENST00000589709 ERCC6Q03468 1493 aa23.36■■□□□ 1.33
VAT1-206ENST00000589709 CUX2O14529 1486 aa23.31■■□□□ 1.32
VAT1-206ENST00000589709 NESP48681 1621 aa23.28■■□□□ 1.32
VAT1-206ENST00000589709 DNAJC5Q9H3Z4 198 aa23.2■■□□□ 1.3
VAT1-206ENST00000589709 LAMC3Q9Y6N6 1575 aa23.17■■□□□ 1.3
VAT1-206ENST00000589709 WIZO95785 1651 aa23.09■■□□□ 1.29
VAT1-206ENST00000589709 PDS5BQ9NTI5 1447 aa23.08■■□□□ 1.28
VAT1-206ENST00000589709 CADPSQ9ULU8 1353 aa23.06■■□□□ 1.28
VAT1-206ENST00000589709 RSF1Q96T23 1441 aaPredicted RBP23.01■■□□□ 1.27
VAT1-206ENST00000589709 THOC2Q8NI27 1593 aaKnown RBP23■■□□□ 1.27
VAT1-206ENST00000589709 KIF21AQ7Z4S6 1674 aa22.93■■□□□ 1.26
VAT1-206ENST00000589709 TOP2AP11388 1531 aaKnown RBP22.85■■□□□ 1.25
VAT1-206ENST00000589709 MRC2Q9UBG0 1479 aa22.83■■□□□ 1.25
VAT1-206ENST00000589709 CFTRP13569 1480 aa22.81■■□□□ 1.24
VAT1-206ENST00000589709 WDR62O43379 1518 aa22.76■■□□□ 1.23
VAT1-206ENST00000589709 FANCD2Q9BXW9 1451 aa22.75■■□□□ 1.23
VAT1-206ENST00000589709 CEP164Q9UPV0 1460 aa22.75■■□□□ 1.23
VAT1-206ENST00000589709 CCDC88BA6NC98 1476 aa22.61■■□□□ 1.21
VAT1-206ENST00000589709 URB2Q14146 1524 aaKnown RBP22.54■■□□□ 1.2
VAT1-206ENST00000589709 PRDM2Q13029 1718 aa22.48■■□□□ 1.19
VAT1-206ENST00000589709 ABCC8Q09428 1581 aa22.35■■□□□ 1.17
VAT1-206ENST00000589709 TOPBP1Q92547 1522 aa22.33■■□□□ 1.17
VAT1-206ENST00000589709 IFT140Q96RY7 1462 aa22.33■■□□□ 1.16
VAT1-206ENST00000589709 OSCARQ8IYS5 282 aa22.31■■□□□ 1.16
VAT1-206ENST00000589709 DNMBPQ6XZF7 1577 aa22.25■■□□□ 1.15
VAT1-206ENST00000589709 ZNF608Q9ULD9 1512 aaPredicted RBP22.23■■□□□ 1.15
VAT1-206ENST00000589709 TRIM41Q8WV44 630 aa22.15■■□□□ 1.14
VAT1-206ENST00000589709 POLA1P09884 1462 aaPredicted RBP22.11■■□□□ 1.13
VAT1-206ENST00000589709 TARBP1Q13395 1621 aaKnown RBP22.11■■□□□ 1.13
VAT1-206ENST00000589709 EIF4G3O43432 1585 aaKnown RBP22.08■■□□□ 1.13
VAT1-206ENST00000589709 AQRO60306 1485 aaKnown RBP eCLIP22.07■■□□□ 1.127e-15■■■■□ 21.7
VAT1-206ENST00000589709 SUPT5HO00267 1087 aaKnown RBP22.06■■□□□ 1.12
VAT1-206ENST00000589709 SOGA1O94964 1423 aa22.05■■□□□ 1.12
VAT1-206ENST00000589709 RAD54L2Q9Y4B4 1467 aa22.02■■□□□ 1.12
VAT1-206ENST00000589709 FGD5Q6ZNL6 1462 aa21.98■■□□□ 1.11
VAT1-206ENST00000589709 CUX1P39880 1505 aa21.98■■□□□ 1.11
VAT1-206ENST00000589709 TDRD9Q8NDG6 1382 aaKnown RBP21.97■■□□□ 1.11
VAT1-206ENST00000589709 WDR97A6NE52 1622 aa21.93■■□□□ 1.1
VAT1-206ENST00000589709 RIMBP3CA6NJZ7 1639 aa21.9■■□□□ 1.1
VAT1-206ENST00000589709 RIMBP3BA6NNM3 1639 aa21.9■■□□□ 1.1
VAT1-206ENST00000589709 RIMBP3Q9UFD9 1639 aa21.9■■□□□ 1.1
VAT1-206ENST00000589709 FBLN2P98095 1184 aa21.89■■□□□ 1.09
VAT1-206ENST00000589709 ARHGEF11O15085 1522 aa21.88■■□□□ 1.09
VAT1-206ENST00000589709 CHD1O14646 1710 aa21.86■■□□□ 1.09
VAT1-206ENST00000589709 GRIN2BQ13224 1484 aa21.83■■□□□ 1.08
VAT1-206ENST00000589709 SNAPC4Q5SXM2 1469 aa21.83■■□□□ 1.08
VAT1-206ENST00000589709 MAGI1Q96QZ7 1491 aaPredicted RBP21.82■■□□□ 1.08
VAT1-206ENST00000589709 CHMP7Q8WUX9 453 aaPredicted RBP21.8■■□□□ 1.08
VAT1-206ENST00000589709 ABCA10Q8WWZ4 1543 aa21.77■■□□□ 1.08
VAT1-206ENST00000589709 GAPVD1Q14C86 1478 aa21.77■■□□□ 1.07
VAT1-206ENST00000589709 CYB5RLQ6IPT4 315 aa21.75■■□□□ 1.07
VAT1-206ENST00000589709 SYNJ2O15056 1496 aa21.74■■□□□ 1.07
VAT1-206ENST00000589709 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
VAT1-206ENST00000589709 CLASP1Q7Z460 1538 aa21.69■■□□□ 1.06
VAT1-206ENST00000589709 SYNJ1O43426 1573 aa21.69■■□□□ 1.06
VAT1-206ENST00000589709 ABCA5Q8WWZ7 1642 aa21.68■■□□□ 1.06
VAT1-206ENST00000589709 TOP2BQ02880 1626 aa21.67■■□□□ 1.06
VAT1-206ENST00000589709 ARAP1Q96P48 1450 aa21.67■■□□□ 1.06
VAT1-206ENST00000589709 PBRM1Q86U86 1689 aa21.65■■□□□ 1.06
VAT1-206ENST00000589709 BIVM-ERCC5R4GMW8 1640 aa21.65■■□□□ 1.06
VAT1-206ENST00000589709 GRIN2AQ12879 1464 aa21.53■■□□□ 1.04
VAT1-206ENST00000589709 FHAD1B1AJZ9 1412 aa21.51■■□□□ 1.03
VAT1-206ENST00000589709 ADAMTS12P58397 1594 aa21.5■■□□□ 1.03
VAT1-206ENST00000589709 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
VAT1-206ENST00000589709 NUP160Q12769 1436 aa21.48■■□□□ 1.03
VAT1-206ENST00000589709 TRHP20396 242 aaPredicted RBP21.44■■□□□ 1.02
VAT1-206ENST00000589709 CEP170Q5SW79 1584 aa21.41■■□□□ 1.02
VAT1-206ENST00000589709 SHROOM2Q13796 1616 aa21.33■■□□□ 1.01
VAT1-206ENST00000589709 ERCC6L2Q5T890 1561 aa21.33■■□□□ 1.01
VAT1-206ENST00000589709 KIF27Q86VH2 1401 aa21.29■■□□□ 1
VAT1-206ENST00000589709 IGF1RP08069 1367 aa21.29■■□□□ 1
VAT1-206ENST00000589709 JPH4Q96JJ6 628 aa21.29■■□□□ 1
VAT1-206ENST00000589709 PRG4Q92954 1404 aaPredicted RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms