RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 NISCHQ9Y2I1 1504 aa22.82■■□□□ 1.24
VPS25-203ENST00000589520 CCDC180Q9P1Z9 1646 aa19.76■□□□□ 0.75
VPS25-203ENST00000589520 ZCCHC6Q5VYS8 1495 aaKnown RBP19.2■□□□□ 0.66
VPS25-203ENST00000589520 ABCC9O60706 1549 aa19.1■□□□□ 0.65
VPS25-203ENST00000589520 DCAF1Q9Y4B6 1507 aa18.96■□□□□ 0.63
VPS25-203ENST00000589520 DNAJC5BQ9UF47 199 aa18.86■□□□□ 0.61
VPS25-203ENST00000589520 DCAF8L2P0C7V8 631 aa18.75■□□□□ 0.59
VPS25-203ENST00000589520 MYO15BQ96JP2 1530 aa18.69■□□□□ 0.58
VPS25-203ENST00000589520 SHROOM4Q9ULL8 1493 aa18.64■□□□□ 0.57
VPS25-203ENST00000589520 NACADO15069 1562 aa18.43■□□□□ 0.54
VPS25-203ENST00000589520 RB1CC1Q8TDY2 1594 aa18.17■□□□□ 0.5
VPS25-203ENST00000589520 SUPT5HO00267 1087 aaKnown RBP18.14■□□□□ 0.49
VPS25-203ENST00000589520 SCRIBQ14160 1630 aa18.09■□□□□ 0.49
VPS25-203ENST00000589520 DNAJC5Q9H3Z4 198 aa18■□□□□ 0.47
VPS25-203ENST00000589520 RSF1Q96T23 1441 aaPredicted RBP17.79■□□□□ 0.44
VPS25-203ENST00000589520 CECR2Q9BXF3 1484 aa17.63■□□□□ 0.41
VPS25-203ENST00000589520 BAZ1AQ9NRL2 1556 aaPredicted RBP17.62■□□□□ 0.41
VPS25-203ENST00000589520 UNC13AQ9UPW8 1703 aa17.6■□□□□ 0.41
VPS25-203ENST00000589520 CHIC1Q5VXU3 224 aa17.56■□□□□ 0.4
VPS25-203ENST00000589520 MROH2BQ7Z745 1585 aa17.56■□□□□ 0.4
VPS25-203ENST00000589520 PABPN1Q86U42 306 aaKnown RBP eCLIP17.55■□□□□ 0.4
VPS25-203ENST00000589520 BICRAQ9NZM4 1560 aa17.51■□□□□ 0.39
VPS25-203ENST00000589520 SMARCA4P51532 1647 aa17.43■□□□□ 0.38
VPS25-203ENST00000589520 WIZO95785 1651 aa17.38■□□□□ 0.37
VPS25-203ENST00000589520 TOP2AP11388 1531 aaKnown RBP17.31■□□□□ 0.36
VPS25-203ENST00000589520 PEG3Q9GZU2 1588 aa17.28■□□□□ 0.36
VPS25-203ENST00000589520 CC2D2AQ9P2K1 1620 aa17.21■□□□□ 0.35
VPS25-203ENST00000589520 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
VPS25-203ENST00000589520 TRIM41Q8WV44 630 aa17.16■□□□□ 0.34
VPS25-203ENST00000589520 ATAD2BQ9ULI0 1458 aa17.15■□□□□ 0.34
VPS25-203ENST00000589520 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
VPS25-203ENST00000589520 BAZ1BQ9UIG0 1483 aaKnown RBP17.06■□□□□ 0.32
VPS25-203ENST00000589520 NCAPD3P42695 1498 aa17.03■□□□□ 0.32
VPS25-203ENST00000589520 EIF4G1Q04637 1599 aaKnown RBP17.01■□□□□ 0.31
VPS25-203ENST00000589520 HMGXB3Q12766 1538 aa16.97■□□□□ 0.31
VPS25-203ENST00000589520 LOC105371045A0A1W2PR82 267 aa16.81■□□□□ 0.28
VPS25-203ENST00000589520 CUX2O14529 1486 aa16.78■□□□□ 0.28
VPS25-203ENST00000589520 WRNQ14191 1432 aaPredicted RBP eCLIP16.76■□□□□ 0.27
VPS25-203ENST00000589520 EEA1Q15075 1411 aa16.76■□□□□ 0.27
VPS25-203ENST00000589520 ABCC8Q09428 1581 aa16.73■□□□□ 0.27
VPS25-203ENST00000589520 FAM9AQ8IZU1 332 aaPredicted RBP16.7■□□□□ 0.26
VPS25-203ENST00000589520 CFTRP13569 1480 aa16.67■□□□□ 0.26
VPS25-203ENST00000589520 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
VPS25-203ENST00000589520 CSRNP3Q8WYN3 585 aa16.6■□□□□ 0.25
VPS25-203ENST00000589520 TOP2BQ02880 1626 aa16.56■□□□□ 0.24
VPS25-203ENST00000589520 SYNJ1O43426 1573 aa16.55■□□□□ 0.24
VPS25-203ENST00000589520 SOGA1O94964 1423 aa16.55■□□□□ 0.24
VPS25-203ENST00000589520 ERCC6Q03468 1493 aa16.51■□□□□ 0.23
VPS25-203ENST00000589520 BIVM-ERCC5R4GMW8 1640 aa16.51■□□□□ 0.23
VPS25-203ENST00000589520 TNIKQ9UKE5 1360 aa16.49■□□□□ 0.23
VPS25-203ENST00000589520 PRDM2Q13029 1718 aa16.48■□□□□ 0.23
VPS25-203ENST00000589520 GOLGA3Q08378 1498 aa16.44■□□□□ 0.22
VPS25-203ENST00000589520 CEP164Q9UPV0 1460 aa16.43■□□□□ 0.22
VPS25-203ENST00000589520 RUSC2Q8N2Y8 1516 aa16.42■□□□□ 0.22
VPS25-203ENST00000589520 CUX1P39880 1505 aa16.41■□□□□ 0.22
VPS25-203ENST00000589520 TRIM26Q12899 539 aaPredicted RBP16.4■□□□□ 0.22
VPS25-203ENST00000589520 KIF21BO75037 1637 aa16.39■□□□□ 0.21
VPS25-203ENST00000589520 UBTFP17480 764 aaKnown RBP16.37■□□□□ 0.21
VPS25-203ENST00000589520 KIF27Q86VH2 1401 aa16.36■□□□□ 0.21
VPS25-203ENST00000589520 LAMC3Q9Y6N6 1575 aa16.36■□□□□ 0.21
VPS25-203ENST00000589520 EHMT2Q96KQ7 1210 aa16.35■□□□□ 0.21
VPS25-203ENST00000589520 FANCD2Q9BXW9 1451 aa16.35■□□□□ 0.21
VPS25-203ENST00000589520 PCGF6Q9BYE7 350 aa16.33■□□□□ 0.2
VPS25-203ENST00000589520 CEP162Q5TB80 1403 aa16.31■□□□□ 0.2
VPS25-203ENST00000589520 PDS5BQ9NTI5 1447 aa16.29■□□□□ 0.2
VPS25-203ENST00000589520 ERICH3Q5RHP9 1530 aa16.28■□□□□ 0.2
VPS25-203ENST00000589520 PRXQ9BXM0 1461 aa16.27■□□□□ 0.19
VPS25-203ENST00000589520 DNMBPQ6XZF7 1577 aa16.25■□□□□ 0.19
VPS25-203ENST00000589520 FGD5Q6ZNL6 1462 aa16.22■□□□□ 0.19
VPS25-203ENST00000589520 RAPGEF2Q9Y4G8 1499 aa16.21■□□□□ 0.19
VPS25-203ENST00000589520 NESP48681 1621 aa16.19■□□□□ 0.18
VPS25-203ENST00000589520 THOC2Q8NI27 1593 aaKnown RBP16.19■□□□□ 0.18
VPS25-203ENST00000589520 TOPBP1Q92547 1522 aa16.19■□□□□ 0.18
VPS25-203ENST00000589520 IGF1RP08069 1367 aa16.17■□□□□ 0.18
VPS25-203ENST00000589520 CLIP1P30622 1438 aa16.17■□□□□ 0.18
VPS25-203ENST00000589520 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.18
VPS25-203ENST00000589520 HRCP23327 699 aa16.12■□□□□ 0.17
VPS25-203ENST00000589520 POLA1P09884 1462 aaPredicted RBP16.11■□□□□ 0.17
VPS25-203ENST00000589520 CARMIL1Q5VZK9 1371 aa16.11■□□□□ 0.17
VPS25-203ENST00000589520 AEBP2Q6ZN18 517 aaPredicted RBP16.08■□□□□ 0.16
VPS25-203ENST00000589520 VPS8Q8N3P4 1428 aa16.08■□□□□ 0.16
VPS25-203ENST00000589520 URB2Q14146 1524 aaKnown RBP16.08■□□□□ 0.16
VPS25-203ENST00000589520 APLP2Q06481 763 aa16.04■□□□□ 0.16
VPS25-203ENST00000589520 RAD54L2Q9Y4B4 1467 aa16.03■□□□□ 0.16
VPS25-203ENST00000589520 MRC2Q9UBG0 1479 aa16■□□□□ 0.15
VPS25-203ENST00000589520 ZEB1P37275 1124 aaPredicted RBP16■□□□□ 0.15
VPS25-203ENST00000589520 CUL7Q14999 1698 aa15.98■□□□□ 0.15
VPS25-203ENST00000589520 KIF21AQ7Z4S6 1674 aa15.97■□□□□ 0.15
VPS25-203ENST00000589520 GAPVD1Q14C86 1478 aa15.94■□□□□ 0.14
VPS25-203ENST00000589520 WDR97A6NE52 1622 aa15.94■□□□□ 0.14
VPS25-203ENST00000589520 PPARGC1BQ86YN6 1023 aaKnown RBP15.92■□□□□ 0.14
VPS25-203ENST00000589520 RIMBP3CA6NJZ7 1639 aa15.92■□□□□ 0.14
VPS25-203ENST00000589520 RIMBP3BA6NNM3 1639 aa15.92■□□□□ 0.14
VPS25-203ENST00000589520 RIMBP3Q9UFD9 1639 aa15.92■□□□□ 0.14
VPS25-203ENST00000589520 ARAP1Q96P48 1450 aa15.91■□□□□ 0.14
VPS25-203ENST00000589520 ABCA5Q8WWZ7 1642 aa15.9■□□□□ 0.14
VPS25-203ENST00000589520 IFT140Q96RY7 1462 aa15.89■□□□□ 0.13
VPS25-203ENST00000589520 ARHGAP35Q9NRY4 1499 aa15.89■□□□□ 0.13
VPS25-203ENST00000589520 TDRD9Q8NDG6 1382 aaKnown RBP15.88■□□□□ 0.13
VPS25-203ENST00000589520 TARBP1Q13395 1621 aaKnown RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms