RNA–Protein interactions for RNA: ENST00000589214.1

ERCC1-209, Transcript of ERCC excision repair 1, endonuclease non-catalytic subunit, humanhuman

TSL 3

Gene ERCC1, Length 674 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC1-209ENST00000589214 NISCHQ9Y2I1 1504 aa37.46■■■■□ 3.59
ERCC1-209ENST00000589214 CCDC180Q9P1Z9 1646 aa33.48■■■□□ 2.95
ERCC1-209ENST00000589214 ABCC9O60706 1549 aa33.02■■■□□ 2.88
ERCC1-209ENST00000589214 RB1CC1Q8TDY2 1594 aa31.62■■■□□ 2.65
ERCC1-209ENST00000589214 NACADO15069 1562 aa31.49■■■□□ 2.63
ERCC1-209ENST00000589214 DCAF8L2P0C7V8 631 aa31.37■■■□□ 2.61
ERCC1-209ENST00000589214 ZCCHC6Q5VYS8 1495 aaKnown RBP31.18■■■□□ 2.58
ERCC1-209ENST00000589214 MYO15BQ96JP2 1530 aa31.18■■■□□ 2.58
ERCC1-209ENST00000589214 UNC13AQ9UPW8 1703 aa30.95■■■□□ 2.55
ERCC1-209ENST00000589214 DCAF1Q9Y4B6 1507 aa30.95■■■□□ 2.55
ERCC1-209ENST00000589214 PABPN1Q86U42 306 aaKnown RBP eCLIP30.75■■■□□ 2.51
ERCC1-209ENST00000589214 BICRAQ9NZM4 1560 aa30.68■■■□□ 2.5
ERCC1-209ENST00000589214 SCRIBQ14160 1630 aa30.57■■■□□ 2.48
ERCC1-209ENST00000589214 DNAJC5BQ9UF47 199 aa30.46■■■□□ 2.47
ERCC1-209ENST00000589214 SHROOM4Q9ULL8 1493 aa30.3■■■□□ 2.44
ERCC1-209ENST00000589214 EIF4G1Q04637 1599 aaKnown RBP29.9■■■□□ 2.38
ERCC1-209ENST00000589214 CC2D2AQ9P2K1 1620 aa29.85■■■□□ 2.37
ERCC1-209ENST00000589214 CECR2Q9BXF3 1484 aa29.67■■■□□ 2.34
ERCC1-209ENST00000589214 SMARCA4P51532 1647 aa29.17■■■□□ 2.26
ERCC1-209ENST00000589214 BAZ1AQ9NRL2 1556 aaPredicted RBP29.07■■■□□ 2.24
ERCC1-209ENST00000589214 ATAD2BQ9ULI0 1458 aa29.04■■■□□ 2.24
ERCC1-209ENST00000589214 NCAPD3P42695 1498 aa29.02■■■□□ 2.24
ERCC1-209ENST00000589214 SMARCA2P51531 1590 aa29.01■■■□□ 2.23
ERCC1-209ENST00000589214 HMGXB3Q12766 1538 aa28.92■■■□□ 2.22
ERCC1-209ENST00000589214 MROH2BQ7Z745 1585 aa28.89■■■□□ 2.22
ERCC1-209ENST00000589214 PEG3Q9GZU2 1588 aa28.85■■■□□ 2.21
ERCC1-209ENST00000589214 BAZ1BQ9UIG0 1483 aaKnown RBP28.81■■■□□ 2.2
ERCC1-209ENST00000589214 WIZO95785 1651 aa28.6■■■□□ 2.17
ERCC1-209ENST00000589214 NESP48681 1621 aa28.49■■■□□ 2.15
ERCC1-209ENST00000589214 ERCC6Q03468 1493 aa28.47■■■□□ 2.15
ERCC1-209ENST00000589214 RSF1Q96T23 1441 aaPredicted RBP28.42■■■□□ 2.14
ERCC1-209ENST00000589214 LAMC3Q9Y6N6 1575 aa28.36■■■□□ 2.13
ERCC1-209ENST00000589214 TOP2AP11388 1531 aaKnown RBP28.27■■■□□ 2.12
ERCC1-209ENST00000589214 CUX2O14529 1486 aa28.24■■■□□ 2.11
ERCC1-209ENST00000589214 KIF21AQ7Z4S6 1674 aa28.19■■■□□ 2.1
ERCC1-209ENST00000589214 CADPSQ9ULU8 1353 aa28.16■■■□□ 2.1
ERCC1-209ENST00000589214 THOC2Q8NI27 1593 aaKnown RBP28.16■■■□□ 2.1
ERCC1-209ENST00000589214 PDS5BQ9NTI5 1447 aa28.13■■■□□ 2.09
ERCC1-209ENST00000589214 CFTRP13569 1480 aa27.95■■■□□ 2.07
ERCC1-209ENST00000589214 MRC2Q9UBG0 1479 aa27.91■■■□□ 2.06
ERCC1-209ENST00000589214 CEP164Q9UPV0 1460 aa27.9■■■□□ 2.06
ERCC1-209ENST00000589214 FANCD2Q9BXW9 1451 aa27.89■■■□□ 2.06
ERCC1-209ENST00000589214 CCDC88BA6NC98 1476 aa27.89■■■□□ 2.05
ERCC1-209ENST00000589214 WDR62O43379 1518 aa27.84■■■□□ 2.05
ERCC1-209ENST00000589214 PRDM2Q13029 1718 aa27.83■■■□□ 2.05
ERCC1-209ENST00000589214 URB2Q14146 1524 aaKnown RBP27.65■■■□□ 2.02
ERCC1-209ENST00000589214 DNAJC5Q9H3Z4 198 aa27.61■■■□□ 2.01
ERCC1-209ENST00000589214 SUPT5HO00267 1087 aaKnown RBP27.5■■□□□ 1.99
ERCC1-209ENST00000589214 TOPBP1Q92547 1522 aa27.42■■□□□ 1.98
ERCC1-209ENST00000589214 DNMBPQ6XZF7 1577 aa27.39■■□□□ 1.97
ERCC1-209ENST00000589214 ABCC8Q09428 1581 aa27.35■■□□□ 1.97
ERCC1-209ENST00000589214 IFT140Q96RY7 1462 aa27.3■■□□□ 1.96
ERCC1-209ENST00000589214 ZNF608Q9ULD9 1512 aaPredicted RBP27.23■■□□□ 1.95
ERCC1-209ENST00000589214 POLA1P09884 1462 aaPredicted RBP27.18■■□□□ 1.94
ERCC1-209ENST00000589214 EIF4G3O43432 1585 aaKnown RBP27.16■■□□□ 1.94
ERCC1-209ENST00000589214 TARBP1Q13395 1621 aaKnown RBP27.16■■□□□ 1.94
ERCC1-209ENST00000589214 CUX1P39880 1505 aa27.13■■□□□ 1.93
ERCC1-209ENST00000589214 FGD5Q6ZNL6 1462 aa27.09■■□□□ 1.93
ERCC1-209ENST00000589214 RAD54L2Q9Y4B4 1467 aa27.06■■□□□ 1.92
ERCC1-209ENST00000589214 SOGA1O94964 1423 aa27.01■■□□□ 1.91
ERCC1-209ENST00000589214 AQRO60306 1485 aaKnown RBP eCLIP27■■□□□ 1.914e-7■■■■□ 26.3
ERCC1-209ENST00000589214 OSCARQ8IYS5 282 aa26.94■■□□□ 1.9
ERCC1-209ENST00000589214 WDR97A6NE52 1622 aa26.92■■□□□ 1.9
ERCC1-209ENST00000589214 TDRD9Q8NDG6 1382 aaKnown RBP26.91■■□□□ 1.9
ERCC1-209ENST00000589214 CHD1O14646 1710 aa26.87■■□□□ 1.89
ERCC1-209ENST00000589214 BIVM-ERCC5R4GMW8 1640 aa26.84■■□□□ 1.89
ERCC1-209ENST00000589214 SYNJ1O43426 1573 aa26.83■■□□□ 1.89
ERCC1-209ENST00000589214 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
ERCC1-209ENST00000589214 TOP2BQ02880 1626 aa26.82■■□□□ 1.88
ERCC1-209ENST00000589214 SNAPC4Q5SXM2 1469 aa26.81■■□□□ 1.88
ERCC1-209ENST00000589214 PBRM1Q86U86 1689 aa26.77■■□□□ 1.88
ERCC1-209ENST00000589214 ABCA10Q8WWZ4 1543 aa26.77■■□□□ 1.88
ERCC1-209ENST00000589214 GRIN2BQ13224 1484 aa26.75■■□□□ 1.87
ERCC1-209ENST00000589214 ABCA5Q8WWZ7 1642 aa26.75■■□□□ 1.87
ERCC1-209ENST00000589214 FBLN2P98095 1184 aa26.73■■□□□ 1.87
ERCC1-209ENST00000589214 GAPVD1Q14C86 1478 aa26.72■■□□□ 1.87
ERCC1-209ENST00000589214 MAGI1Q96QZ7 1491 aaPredicted RBP26.72■■□□□ 1.87
ERCC1-209ENST00000589214 RIMBP3CA6NJZ7 1639 aa26.68■■□□□ 1.86
ERCC1-209ENST00000589214 RIMBP3BA6NNM3 1639 aa26.68■■□□□ 1.86
ERCC1-209ENST00000589214 RIMBP3Q9UFD9 1639 aa26.68■■□□□ 1.86
ERCC1-209ENST00000589214 TRIM41Q8WV44 630 aa26.67■■□□□ 1.86
ERCC1-209ENST00000589214 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
ERCC1-209ENST00000589214 ARHGEF11O15085 1522 aa26.61■■□□□ 1.85
ERCC1-209ENST00000589214 CHMP7Q8WUX9 453 aaPredicted RBP26.58■■□□□ 1.85
ERCC1-209ENST00000589214 CLASP1Q7Z460 1538 aa26.54■■□□□ 1.84
ERCC1-209ENST00000589214 ADAMTS12P58397 1594 aa26.53■■□□□ 1.84
ERCC1-209ENST00000589214 ERICH3Q5RHP9 1530 aa26.45■■□□□ 1.83
ERCC1-209ENST00000589214 GRIN2AQ12879 1464 aa26.43■■□□□ 1.82
ERCC1-209ENST00000589214 FHAD1B1AJZ9 1412 aa26.39■■□□□ 1.82
ERCC1-209ENST00000589214 ARAP1Q96P48 1450 aa26.39■■□□□ 1.82
ERCC1-209ENST00000589214 CEP170Q5SW79 1584 aa26.35■■□□□ 1.81
ERCC1-209ENST00000589214 CYB5RLQ6IPT4 315 aa26.31■■□□□ 1.8
ERCC1-209ENST00000589214 NUP160Q12769 1436 aa26.31■■□□□ 1.8
ERCC1-209ENST00000589214 KIF27Q86VH2 1401 aa26.27■■□□□ 1.8
ERCC1-209ENST00000589214 CUL7Q14999 1698 aa26.21■■□□□ 1.79
ERCC1-209ENST00000589214 SHROOM2Q13796 1616 aa26.17■■□□□ 1.78
ERCC1-209ENST00000589214 ERCC6L2Q5T890 1561 aa26.17■■□□□ 1.78
ERCC1-209ENST00000589214 RUSC2Q8N2Y8 1516 aa26.15■■□□□ 1.78
ERCC1-209ENST00000589214 IGF1RP08069 1367 aa26.15■■□□□ 1.78
ERCC1-209ENST00000589214 CARMIL1Q5VZK9 1371 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms