RNA–Protein interactions for RNA: ENST00000588483.1

TPM4-209, Transcript of tropomyosin 4, humanhuman

TSL 5

Gene TPM4, Length 801 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-209ENST00000588483 NISCHQ9Y2I1 1504 aa25.92■■□□□ 1.74
TPM4-209ENST00000588483 CCDC180Q9P1Z9 1646 aa23.15■■□□□ 1.3
TPM4-209ENST00000588483 ABCC9O60706 1549 aa22.63■■□□□ 1.21
TPM4-209ENST00000588483 RB1CC1Q8TDY2 1594 aa21.8■■□□□ 1.08
TPM4-209ENST00000588483 NACADO15069 1562 aa21.78■■□□□ 1.08
TPM4-209ENST00000588483 MYO15BQ96JP2 1530 aa21.69■■□□□ 1.06
TPM4-209ENST00000588483 ZCCHC6Q5VYS8 1495 aaKnown RBP21.59■■□□□ 1.05
TPM4-209ENST00000588483 DCAF1Q9Y4B6 1507 aa21.53■■□□□ 1.04
TPM4-209ENST00000588483 DCAF8L2P0C7V8 631 aa21.48■■□□□ 1.03
TPM4-209ENST00000588483 UNC13AQ9UPW8 1703 aa21.32■■□□□ 1
TPM4-209ENST00000588483 BICRAQ9NZM4 1560 aa21.17■□□□□ 0.98
TPM4-209ENST00000588483 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.97
TPM4-209ENST00000588483 SHROOM4Q9ULL8 1493 aa21.02■□□□□ 0.96
TPM4-209ENST00000588483 SCRIBQ14160 1630 aa21■□□□□ 0.95
TPM4-209ENST00000588483 DNAJC5BQ9UF47 199 aa20.89■□□□□ 0.93
TPM4-209ENST00000588483 EIF4G1Q04637 1599 aaKnown RBP20.6■□□□□ 0.89
TPM4-209ENST00000588483 CC2D2AQ9P2K1 1620 aa20.53■□□□□ 0.88
TPM4-209ENST00000588483 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
TPM4-209ENST00000588483 SMARCA4P51532 1647 aa20.14■□□□□ 0.81
TPM4-209ENST00000588483 BAZ1AQ9NRL2 1556 aaPredicted RBP20.11■□□□□ 0.81
TPM4-209ENST00000588483 NCAPD3P42695 1498 aa20.1■□□□□ 0.81
TPM4-209ENST00000588483 ATAD2BQ9ULI0 1458 aa20.05■□□□□ 0.8
TPM4-209ENST00000588483 SMARCA2P51531 1590 aa20.04■□□□□ 0.8
TPM4-209ENST00000588483 PEG3Q9GZU2 1588 aa20.02■□□□□ 0.8
TPM4-209ENST00000588483 HMGXB3Q12766 1538 aa20.01■□□□□ 0.79
TPM4-209ENST00000588483 MROH2BQ7Z745 1585 aa19.94■□□□□ 0.78
TPM4-209ENST00000588483 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
TPM4-209ENST00000588483 WIZO95785 1651 aa19.71■□□□□ 0.75
TPM4-209ENST00000588483 RSF1Q96T23 1441 aaPredicted RBP19.68■□□□□ 0.74
TPM4-209ENST00000588483 LAMC3Q9Y6N6 1575 aa19.58■□□□□ 0.73
TPM4-209ENST00000588483 NESP48681 1621 aa19.57■□□□□ 0.72
TPM4-209ENST00000588483 TOP2AP11388 1531 aaKnown RBP19.54■□□□□ 0.72
TPM4-209ENST00000588483 ERCC6Q03468 1493 aa19.52■□□□□ 0.72
TPM4-209ENST00000588483 CADPSQ9ULU8 1353 aa19.46■□□□□ 0.71
TPM4-209ENST00000588483 CUX2O14529 1486 aa19.46■□□□□ 0.71
TPM4-209ENST00000588483 PDS5BQ9NTI5 1447 aa19.42■□□□□ 0.7
TPM4-209ENST00000588483 THOC2Q8NI27 1593 aaKnown RBP19.38■□□□□ 0.69
TPM4-209ENST00000588483 KIF21AQ7Z4S6 1674 aa19.36■□□□□ 0.69
TPM4-209ENST00000588483 CFTRP13569 1480 aa19.35■□□□□ 0.69
TPM4-209ENST00000588483 CCDC88BA6NC98 1476 aa19.27■□□□□ 0.67
TPM4-209ENST00000588483 FANCD2Q9BXW9 1451 aa19.22■□□□□ 0.67
TPM4-209ENST00000588483 MRC2Q9UBG0 1479 aa19.22■□□□□ 0.67
TPM4-209ENST00000588483 PRDM2Q13029 1718 aa19.22■□□□□ 0.67
TPM4-209ENST00000588483 CEP164Q9UPV0 1460 aa19.22■□□□□ 0.67
TPM4-209ENST00000588483 WDR62O43379 1518 aa19.2■□□□□ 0.66
TPM4-209ENST00000588483 URB2Q14146 1524 aaKnown RBP19.05■□□□□ 0.64
TPM4-209ENST00000588483 DNAJC5Q9H3Z4 198 aa18.95■□□□□ 0.62
TPM4-209ENST00000588483 ABCC8Q09428 1581 aa18.93■□□□□ 0.62
TPM4-209ENST00000588483 SUPT5HO00267 1087 aaKnown RBP18.92■□□□□ 0.62
TPM4-209ENST00000588483 TOPBP1Q92547 1522 aa18.91■□□□□ 0.62
TPM4-209ENST00000588483 DNMBPQ6XZF7 1577 aa18.9■□□□□ 0.62
TPM4-209ENST00000588483 IFT140Q96RY7 1462 aa18.84■□□□□ 0.61
TPM4-209ENST00000588483 POLA1P09884 1462 aaPredicted RBP18.75■□□□□ 0.59
TPM4-209ENST00000588483 TARBP1Q13395 1621 aaKnown RBP18.74■□□□□ 0.59
TPM4-209ENST00000588483 ZNF608Q9ULD9 1512 aaPredicted RBP18.73■□□□□ 0.59
TPM4-209ENST00000588483 CUX1P39880 1505 aa18.72■□□□□ 0.59
TPM4-209ENST00000588483 EIF4G3O43432 1585 aaKnown RBP18.68■□□□□ 0.58
TPM4-209ENST00000588483 FGD5Q6ZNL6 1462 aa18.66■□□□□ 0.58
TPM4-209ENST00000588483 WDR97A6NE52 1622 aa18.66■□□□□ 0.58
TPM4-209ENST00000588483 SOGA1O94964 1423 aa18.63■□□□□ 0.57
TPM4-209ENST00000588483 RAD54L2Q9Y4B4 1467 aa18.62■□□□□ 0.57
TPM4-209ENST00000588483 AQRO60306 1485 aaKnown RBP eCLIP18.58■□□□□ 0.57
TPM4-209ENST00000588483 BIVM-ERCC5R4GMW8 1640 aa18.56■□□□□ 0.56
TPM4-209ENST00000588483 TOP2BQ02880 1626 aa18.56■□□□□ 0.56
TPM4-209ENST00000588483 OSCARQ8IYS5 282 aa18.54■□□□□ 0.56
TPM4-209ENST00000588483 WRNQ14191 1432 aaPredicted RBP eCLIP18.54■□□□□ 0.56
TPM4-209ENST00000588483 ABCA10Q8WWZ4 1543 aa18.53■□□□□ 0.56
TPM4-209ENST00000588483 TDRD9Q8NDG6 1382 aaKnown RBP18.52■□□□□ 0.55
TPM4-209ENST00000588483 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
TPM4-209ENST00000588483 GRIN2BQ13224 1484 aa18.46■□□□□ 0.55
TPM4-209ENST00000588483 ABCA5Q8WWZ7 1642 aa18.46■□□□□ 0.55
TPM4-209ENST00000588483 MAGI1Q96QZ7 1491 aaPredicted RBP18.46■□□□□ 0.54
TPM4-209ENST00000588483 CHD1O14646 1710 aa18.45■□□□□ 0.54
TPM4-209ENST00000588483 GAPVD1Q14C86 1478 aa18.44■□□□□ 0.54
TPM4-209ENST00000588483 SNAPC4Q5SXM2 1469 aa18.43■□□□□ 0.54
TPM4-209ENST00000588483 PBRM1Q86U86 1689 aa18.42■□□□□ 0.54
TPM4-209ENST00000588483 SYNJ2O15056 1496 aa18.37■□□□□ 0.53
TPM4-209ENST00000588483 ERICH3Q5RHP9 1530 aa18.31■□□□□ 0.52
TPM4-209ENST00000588483 CLASP1Q7Z460 1538 aa18.3■□□□□ 0.52
TPM4-209ENST00000588483 RIMBP3CA6NJZ7 1639 aa18.3■□□□□ 0.52
TPM4-209ENST00000588483 RIMBP3BA6NNM3 1639 aa18.3■□□□□ 0.52
TPM4-209ENST00000588483 RIMBP3Q9UFD9 1639 aa18.3■□□□□ 0.52
TPM4-209ENST00000588483 ARHGEF11O15085 1522 aa18.29■□□□□ 0.52
TPM4-209ENST00000588483 FBLN2P98095 1184 aa18.29■□□□□ 0.52
TPM4-209ENST00000588483 ADAMTS12P58397 1594 aa18.29■□□□□ 0.52
TPM4-209ENST00000588483 CHMP7Q8WUX9 453 aaPredicted RBP18.28■□□□□ 0.52
TPM4-209ENST00000588483 FHAD1B1AJZ9 1412 aa18.23■□□□□ 0.51
TPM4-209ENST00000588483 GRIN2AQ12879 1464 aa18.23■□□□□ 0.51
TPM4-209ENST00000588483 NUP160Q12769 1436 aa18.19■□□□□ 0.5
TPM4-209ENST00000588483 KIF27Q86VH2 1401 aa18.16■□□□□ 0.5
TPM4-209ENST00000588483 CEP170Q5SW79 1584 aa18.14■□□□□ 0.49
TPM4-209ENST00000588483 TRIM41Q8WV44 630 aa18.14■□□□□ 0.49
TPM4-209ENST00000588483 ARAP1Q96P48 1450 aa18.14■□□□□ 0.49
TPM4-209ENST00000588483 IGF1RP08069 1367 aa18.11■□□□□ 0.49
TPM4-209ENST00000588483 CUL7Q14999 1698 aa18.11■□□□□ 0.49
TPM4-209ENST00000588483 SHROOM2Q13796 1616 aa18.08■□□□□ 0.48
TPM4-209ENST00000588483 RUSC2Q8N2Y8 1516 aa18.03■□□□□ 0.48
TPM4-209ENST00000588483 CYB5RLQ6IPT4 315 aa18.02■□□□□ 0.48
TPM4-209ENST00000588483 CARMIL1Q5VZK9 1371 aa17.98■□□□□ 0.47
TPM4-209ENST00000588483 ERCC6L2Q5T890 1561 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms