RNA–Protein interactions for RNA: ENST00000588228.5

NFIX-210, Transcript of nuclear factor I X, humanhuman

TSL 2 BASIC

Gene NFIX, Length 1,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIX-210ENST00000588228 NISCHQ9Y2I1 1504 aa37.25■■■■□ 3.55
NFIX-210ENST00000588228 CCDC180Q9P1Z9 1646 aa32.41■■■□□ 2.78
NFIX-210ENST00000588228 ZCCHC6Q5VYS8 1495 aaKnown RBP31.33■■■□□ 2.61
NFIX-210ENST00000588228 DCAF1Q9Y4B6 1507 aa30.83■■■□□ 2.53
NFIX-210ENST00000588228 DCAF8L2P0C7V8 631 aa30.69■■■□□ 2.5
NFIX-210ENST00000588228 ABCC9O60706 1549 aa30.55■■■□□ 2.48
NFIX-210ENST00000588228 MYO15BQ96JP2 1530 aa30.45■■■□□ 2.46
NFIX-210ENST00000588228 SHROOM4Q9ULL8 1493 aa30.42■■■□□ 2.46
NFIX-210ENST00000588228 NACADO15069 1562 aa30.19■■■□□ 2.42
NFIX-210ENST00000588228 RB1CC1Q8TDY2 1594 aa29.9■■■□□ 2.38
NFIX-210ENST00000588228 SCRIBQ14160 1630 aa29.8■■■□□ 2.36
NFIX-210ENST00000588228 SUPT5HO00267 1087 aaKnown RBP29.33■■■□□ 2.29
NFIX-210ENST00000588228 UNC13AQ9UPW8 1703 aa29.2■■■□□ 2.27
NFIX-210ENST00000588228 BICRAQ9NZM4 1560 aa28.97■■■□□ 2.23
NFIX-210ENST00000588228 RSF1Q96T23 1441 aaPredicted RBP28.95■■■□□ 2.22
NFIX-210ENST00000588228 CECR2Q9BXF3 1484 aa28.92■■■□□ 2.22
NFIX-210ENST00000588228 PABPN1Q86U42 306 aaKnown RBP eCLIP28.84■■■□□ 2.21
NFIX-210ENST00000588228 MROH2BQ7Z745 1585 aa28.76■■■□□ 2.2
NFIX-210ENST00000588228 BAZ1AQ9NRL2 1556 aaPredicted RBP28.76■■■□□ 2.2
NFIX-210ENST00000588228 SMARCA4P51532 1647 aa28.59■■■□□ 2.17
NFIX-210ENST00000588228 WIZO95785 1651 aa28.5■■■□□ 2.15
NFIX-210ENST00000588228 PEG3Q9GZU2 1588 aa28.27■■■□□ 2.12
NFIX-210ENST00000588228 TOP2AP11388 1531 aaKnown RBP28.26■■■□□ 2.11
NFIX-210ENST00000588228 CHIC1Q5VXU3 224 aa28.15■■■□□ 2.1
NFIX-210ENST00000588228 ATAD2BQ9ULI0 1458 aa28.13■■■□□ 2.09
NFIX-210ENST00000588228 SMARCA2P51531 1590 aa28.11■■■□□ 2.09
NFIX-210ENST00000588228 EIF4G1Q04637 1599 aaKnown RBP28.11■■■□□ 2.09
NFIX-210ENST00000588228 CCDC88BA6NC98 1476 aa27.97■■■□□ 2.07
NFIX-210ENST00000588228 BAZ1BQ9UIG0 1483 aaKnown RBP27.97■■■□□ 2.07
NFIX-210ENST00000588228 NCAPD3P42695 1498 aa27.88■■■□□ 2.05
NFIX-210ENST00000588228 HMGXB3Q12766 1538 aa27.84■■■□□ 2.05
NFIX-210ENST00000588228 CC2D2AQ9P2K1 1620 aa27.65■■■□□ 2.02
NFIX-210ENST00000588228 TRIM41Q8WV44 630 aa27.59■■■□□ 2.01
NFIX-210ENST00000588228 ABCC8Q09428 1581 aa27.38■■□□□ 1.97
NFIX-210ENST00000588228 CFTRP13569 1480 aa27.29■■□□□ 1.96
NFIX-210ENST00000588228 WRNQ14191 1432 aaPredicted RBP eCLIP27.24■■□□□ 1.95
NFIX-210ENST00000588228 CADPSQ9ULU8 1353 aa27.17■■□□□ 1.94
NFIX-210ENST00000588228 SYNJ1O43426 1573 aa27.09■■□□□ 1.93
NFIX-210ENST00000588228 PRDM2Q13029 1718 aa27.06■■□□□ 1.92
NFIX-210ENST00000588228 FAM9AQ8IZU1 332 aaPredicted RBP27.05■■□□□ 1.92
NFIX-210ENST00000588228 LOC105371045A0A1W2PR82 267 aa27.05■■□□□ 1.92
NFIX-210ENST00000588228 TOP2BQ02880 1626 aa26.99■■□□□ 1.91
NFIX-210ENST00000588228 BIVM-ERCC5R4GMW8 1640 aa26.95■■□□□ 1.9
NFIX-210ENST00000588228 EEA1Q15075 1411 aa26.94■■□□□ 1.9
NFIX-210ENST00000588228 SOGA1O94964 1423 aa26.92■■□□□ 1.9
NFIX-210ENST00000588228 DNAJC5BQ9UF47 199 aa26.9■■□□□ 1.9
NFIX-210ENST00000588228 LAMC3Q9Y6N6 1575 aa26.9■■□□□ 1.9
NFIX-210ENST00000588228 CUX1P39880 1505 aa26.89■■□□□ 1.9
NFIX-210ENST00000588228 FANCD2Q9BXW9 1451 aa26.86■■□□□ 1.89
NFIX-210ENST00000588228 NESP48681 1621 aa26.85■■□□□ 1.89
NFIX-210ENST00000588228 RUSC2Q8N2Y8 1516 aa26.79■■□□□ 1.88
NFIX-210ENST00000588228 CSRNP3Q8WYN3 585 aa26.76■■□□□ 1.87
NFIX-210ENST00000588228 PDS5BQ9NTI5 1447 aa26.7■■□□□ 1.87
NFIX-210ENST00000588228 CEP164Q9UPV0 1460 aa26.68■■□□□ 1.86
NFIX-210ENST00000588228 EHMT2Q96KQ7 1210 aa26.63■■□□□ 1.85
NFIX-210ENST00000588228 DNMBPQ6XZF7 1577 aa26.63■■□□□ 1.85
NFIX-210ENST00000588228 FGD5Q6ZNL6 1462 aa26.59■■□□□ 1.85
NFIX-210ENST00000588228 TOPBP1Q92547 1522 aa26.58■■□□□ 1.84
NFIX-210ENST00000588228 KIF27Q86VH2 1401 aa26.55■■□□□ 1.84
NFIX-210ENST00000588228 GOLGA3Q08378 1498 aa26.54■■□□□ 1.84
NFIX-210ENST00000588228 KIF21BO75037 1637 aa26.54■■□□□ 1.84
NFIX-210ENST00000588228 URB2Q14146 1524 aaKnown RBP26.51■■□□□ 1.83
NFIX-210ENST00000588228 TNIKQ9UKE5 1360 aa26.5■■□□□ 1.83
NFIX-210ENST00000588228 KIF21AQ7Z4S6 1674 aa26.49■■□□□ 1.83
NFIX-210ENST00000588228 POLA1P09884 1462 aaPredicted RBP26.46■■□□□ 1.83
NFIX-210ENST00000588228 CUX2O14529 1486 aa26.44■■□□□ 1.82
NFIX-210ENST00000588228 PRXQ9BXM0 1461 aa26.4■■□□□ 1.82
NFIX-210ENST00000588228 UBTFP17480 764 aaKnown RBP26.4■■□□□ 1.82
NFIX-210ENST00000588228 ABCA10Q8WWZ4 1543 aa26.39■■□□□ 1.81
NFIX-210ENST00000588228 RAPGEF2Q9Y4G8 1499 aa26.37■■□□□ 1.81
NFIX-210ENST00000588228 ERICH3Q5RHP9 1530 aa26.36■■□□□ 1.81
NFIX-210ENST00000588228 RAD54L2Q9Y4B4 1467 aa26.35■■□□□ 1.81
NFIX-210ENST00000588228 MRC2Q9UBG0 1479 aa26.35■■□□□ 1.81
NFIX-210ENST00000588228 CEP162Q5TB80 1403 aa26.34■■□□□ 1.81
NFIX-210ENST00000588228 IGF1RP08069 1367 aa26.31■■□□□ 1.8
NFIX-210ENST00000588228 WDR97A6NE52 1622 aa26.23■■□□□ 1.79
NFIX-210ENST00000588228 ERCC6Q03468 1493 aa26.2■■□□□ 1.78
NFIX-210ENST00000588228 WDR62O43379 1518 aa26.19■■□□□ 1.78
NFIX-210ENST00000588228 CARMIL1Q5VZK9 1371 aa26.18■■□□□ 1.78
NFIX-210ENST00000588228 TARBP1Q13395 1621 aaKnown RBP26.15■■□□□ 1.78
NFIX-210ENST00000588228 ABCA5Q8WWZ7 1642 aa26.13■■□□□ 1.77
NFIX-210ENST00000588228 CLIP1P30622 1438 aa26.12■■□□□ 1.77
NFIX-210ENST00000588228 TDRD9Q8NDG6 1382 aaKnown RBP26.09■■□□□ 1.77
NFIX-210ENST00000588228 GAPVD1Q14C86 1478 aa26.09■■□□□ 1.77
NFIX-210ENST00000588228 THOC2Q8NI27 1593 aaKnown RBP26.07■■□□□ 1.76
NFIX-210ENST00000588228 CUL7Q14999 1698 aa26.07■■□□□ 1.76
NFIX-210ENST00000588228 IFT140Q96RY7 1462 aa26.05■■□□□ 1.76
NFIX-210ENST00000588228 TRIM26Q12899 539 aaPredicted RBP25.93■■□□□ 1.74
NFIX-210ENST00000588228 PCGF6Q9BYE7 350 aa25.92■■□□□ 1.74
NFIX-210ENST00000588228 VPS8Q8N3P4 1428 aa25.91■■□□□ 1.74
NFIX-210ENST00000588228 AQRO60306 1485 aaKnown RBP eCLIP25.91■■□□□ 1.748e-7■■■■□ 22.8
NFIX-210ENST00000588228 RANGAP1P46060 587 aaPredicted RBP25.9■■□□□ 1.74
NFIX-210ENST00000588228 GRIN2BQ13224 1484 aa25.88■■□□□ 1.73
NFIX-210ENST00000588228 PBRM1Q86U86 1689 aa25.87■■□□□ 1.73
NFIX-210ENST00000588228 ZNF608Q9ULD9 1512 aaPredicted RBP25.87■■□□□ 1.73
NFIX-210ENST00000588228 ARAP1Q96P48 1450 aa25.84■■□□□ 1.73
NFIX-210ENST00000588228 FHAD1B1AJZ9 1412 aa25.83■■□□□ 1.72
NFIX-210ENST00000588228 ARHGAP35Q9NRY4 1499 aa25.82■■□□□ 1.72
NFIX-210ENST00000588228 ADAMTS12P58397 1594 aa25.79■■□□□ 1.72
NFIX-210ENST00000588228 EIF4G3O43432 1585 aaKnown RBP25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms