RNA–Protein interactions for RNA: ENST00000588200.1

PKN1-211, Transcript of protein kinase N1, humanhuman

TSL 3

Gene PKN1, Length 548 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKN1-211ENST00000588200 NISCHQ9Y2I1 1504 aa33.49■■■□□ 2.95
PKN1-211ENST00000588200 CCDC180Q9P1Z9 1646 aa30.06■■■□□ 2.4
PKN1-211ENST00000588200 ABCC9O60706 1549 aa29.78■■■□□ 2.36
PKN1-211ENST00000588200 RB1CC1Q8TDY2 1594 aa28.52■■■□□ 2.16
PKN1-211ENST00000588200 NACADO15069 1562 aa28.4■■■□□ 2.14
PKN1-211ENST00000588200 MYO15BQ96JP2 1530 aa28.16■■■□□ 2.1
PKN1-211ENST00000588200 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
PKN1-211ENST00000588200 DNAJC5BQ9UF47 199 aa27.89■■■□□ 2.06
PKN1-211ENST00000588200 UNC13AQ9UPW8 1703 aa27.86■■■□□ 2.05
PKN1-211ENST00000588200 DCAF1Q9Y4B6 1507 aa27.8■■■□□ 2.04
PKN1-211ENST00000588200 ZCCHC6Q5VYS8 1495 aaKnown RBP27.78■■■□□ 2.04
PKN1-211ENST00000588200 PABPN1Q86U42 306 aaKnown RBP eCLIP27.7■■■□□ 2.02
PKN1-211ENST00000588200 BICRAQ9NZM4 1560 aa27.69■■■□□ 2.02
PKN1-211ENST00000588200 SHROOM4Q9ULL8 1493 aa27.46■■□□□ 1.99
PKN1-211ENST00000588200 SCRIBQ14160 1630 aa27.22■■□□□ 1.95
PKN1-211ENST00000588200 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
PKN1-211ENST00000588200 EIF4G1Q04637 1599 aaKnown RBP26.98■■□□□ 1.91
PKN1-211ENST00000588200 CECR2Q9BXF3 1484 aa26.88■■□□□ 1.89
PKN1-211ENST00000588200 NCAPD3P42695 1498 aa26.23■■□□□ 1.79
PKN1-211ENST00000588200 ATAD2BQ9ULI0 1458 aa26.11■■□□□ 1.77
PKN1-211ENST00000588200 SMARCA4P51532 1647 aa26.08■■□□□ 1.77
PKN1-211ENST00000588200 SMARCA2P51531 1590 aa26.05■■□□□ 1.76
PKN1-211ENST00000588200 HMGXB3Q12766 1538 aa26.03■■□□□ 1.76
PKN1-211ENST00000588200 BAZ1AQ9NRL2 1556 aaPredicted RBP26■■□□□ 1.75
PKN1-211ENST00000588200 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.74
PKN1-211ENST00000588200 BAZ1BQ9UIG0 1483 aaKnown RBP25.8■■□□□ 1.72
PKN1-211ENST00000588200 CUX2O14529 1486 aa25.77■■□□□ 1.72
PKN1-211ENST00000588200 MROH2BQ7Z745 1585 aa25.75■■□□□ 1.71
PKN1-211ENST00000588200 ERCC6Q03468 1493 aa25.72■■□□□ 1.71
PKN1-211ENST00000588200 DNAJC5Q9H3Z4 198 aa25.62■■□□□ 1.69
PKN1-211ENST00000588200 NESP48681 1621 aa25.62■■□□□ 1.69
PKN1-211ENST00000588200 LAMC3Q9Y6N6 1575 aa25.61■■□□□ 1.69
PKN1-211ENST00000588200 THOC2Q8NI27 1593 aaKnown RBP25.43■■□□□ 1.66
PKN1-211ENST00000588200 PDS5BQ9NTI5 1447 aa25.42■■□□□ 1.66
PKN1-211ENST00000588200 WIZO95785 1651 aa25.42■■□□□ 1.66
PKN1-211ENST00000588200 CADPSQ9ULU8 1353 aa25.39■■□□□ 1.65
PKN1-211ENST00000588200 KIF21AQ7Z4S6 1674 aa25.33■■□□□ 1.65
PKN1-211ENST00000588200 RSF1Q96T23 1441 aaPredicted RBP25.29■■□□□ 1.64
PKN1-211ENST00000588200 TOP2AP11388 1531 aaKnown RBP25.17■■□□□ 1.62
PKN1-211ENST00000588200 MRC2Q9UBG0 1479 aa25.15■■□□□ 1.62
PKN1-211ENST00000588200 CFTRP13569 1480 aa25.14■■□□□ 1.61
PKN1-211ENST00000588200 WDR62O43379 1518 aa25.13■■□□□ 1.61
PKN1-211ENST00000588200 CEP164Q9UPV0 1460 aa25.07■■□□□ 1.6
PKN1-211ENST00000588200 FANCD2Q9BXW9 1451 aa25.05■■□□□ 1.6
PKN1-211ENST00000588200 PRDM2Q13029 1718 aa24.89■■□□□ 1.57
PKN1-211ENST00000588200 CCDC88BA6NC98 1476 aa24.86■■□□□ 1.57
PKN1-211ENST00000588200 URB2Q14146 1524 aaKnown RBP24.83■■□□□ 1.57
PKN1-211ENST00000588200 ABCC8Q09428 1581 aa24.65■■□□□ 1.54
PKN1-211ENST00000588200 IFT140Q96RY7 1462 aa24.6■■□□□ 1.53
PKN1-211ENST00000588200 TOPBP1Q92547 1522 aa24.59■■□□□ 1.53
PKN1-211ENST00000588200 OSCARQ8IYS5 282 aa24.56■■□□□ 1.52
PKN1-211ENST00000588200 DNMBPQ6XZF7 1577 aa24.53■■□□□ 1.52
PKN1-211ENST00000588200 ZNF608Q9ULD9 1512 aaPredicted RBP24.47■■□□□ 1.51
PKN1-211ENST00000588200 TARBP1Q13395 1621 aaKnown RBP24.4■■□□□ 1.5
PKN1-211ENST00000588200 EIF4G3O43432 1585 aaKnown RBP24.37■■□□□ 1.49
PKN1-211ENST00000588200 POLA1P09884 1462 aaPredicted RBP24.35■■□□□ 1.49
PKN1-211ENST00000588200 TRIM41Q8WV44 630 aa24.33■■□□□ 1.49
PKN1-211ENST00000588200 AQRO60306 1485 aaKnown RBP eCLIP24.26■■□□□ 1.473e-7■■■■■ 30.5
PKN1-211ENST00000588200 WDR97A6NE52 1622 aa24.26■■□□□ 1.47
PKN1-211ENST00000588200 SOGA1O94964 1423 aa24.23■■□□□ 1.47
PKN1-211ENST00000588200 RIMBP3CA6NJZ7 1639 aa24.2■■□□□ 1.46
PKN1-211ENST00000588200 RIMBP3BA6NNM3 1639 aa24.2■■□□□ 1.46
PKN1-211ENST00000588200 RIMBP3Q9UFD9 1639 aa24.2■■□□□ 1.46
PKN1-211ENST00000588200 RAD54L2Q9Y4B4 1467 aa24.19■■□□□ 1.46
PKN1-211ENST00000588200 CUX1P39880 1505 aa24.19■■□□□ 1.46
PKN1-211ENST00000588200 FGD5Q6ZNL6 1462 aa24.18■■□□□ 1.46
PKN1-211ENST00000588200 CHD1O14646 1710 aa24.15■■□□□ 1.46
PKN1-211ENST00000588200 ARHGEF11O15085 1522 aa24.15■■□□□ 1.46
PKN1-211ENST00000588200 TDRD9Q8NDG6 1382 aaKnown RBP24.12■■□□□ 1.45
PKN1-211ENST00000588200 MAGI1Q96QZ7 1491 aaPredicted RBP24.06■■□□□ 1.44
PKN1-211ENST00000588200 SUPT5HO00267 1087 aaKnown RBP24.05■■□□□ 1.44
PKN1-211ENST00000588200 GRIN2BQ13224 1484 aa24.04■■□□□ 1.44
PKN1-211ENST00000588200 SNAPC4Q5SXM2 1469 aa24.02■■□□□ 1.44
PKN1-211ENST00000588200 ABCA10Q8WWZ4 1543 aa24■■□□□ 1.43
PKN1-211ENST00000588200 FBLN2P98095 1184 aa23.99■■□□□ 1.43
PKN1-211ENST00000588200 CLASP1Q7Z460 1538 aa23.95■■□□□ 1.43
PKN1-211ENST00000588200 SYNJ2O15056 1496 aa23.95■■□□□ 1.42
PKN1-211ENST00000588200 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
PKN1-211ENST00000588200 CHMP7Q8WUX9 453 aaPredicted RBP23.93■■□□□ 1.42
PKN1-211ENST00000588200 SYNJ1O43426 1573 aa23.92■■□□□ 1.42
PKN1-211ENST00000588200 ABCA5Q8WWZ7 1642 aa23.92■■□□□ 1.42
PKN1-211ENST00000588200 ARAP1Q96P48 1450 aa23.91■■□□□ 1.42
PKN1-211ENST00000588200 PBRM1Q86U86 1689 aa23.91■■□□□ 1.42
PKN1-211ENST00000588200 CYB5RLQ6IPT4 315 aa23.9■■□□□ 1.42
PKN1-211ENST00000588200 BIVM-ERCC5R4GMW8 1640 aa23.88■■□□□ 1.41
PKN1-211ENST00000588200 WRNQ14191 1432 aaPredicted RBP eCLIP23.88■■□□□ 1.41
PKN1-211ENST00000588200 TOP2BQ02880 1626 aa23.88■■□□□ 1.41
PKN1-211ENST00000588200 GRIN2AQ12879 1464 aa23.71■■□□□ 1.39
PKN1-211ENST00000588200 ADAMTS12P58397 1594 aa23.7■■□□□ 1.38
PKN1-211ENST00000588200 ERICH3Q5RHP9 1530 aa23.7■■□□□ 1.38
PKN1-211ENST00000588200 FHAD1B1AJZ9 1412 aa23.67■■□□□ 1.38
PKN1-211ENST00000588200 NUP160Q12769 1436 aa23.67■■□□□ 1.38
PKN1-211ENST00000588200 CEP170Q5SW79 1584 aa23.6■■□□□ 1.37
PKN1-211ENST00000588200 SHROOM2Q13796 1616 aa23.57■■□□□ 1.36
PKN1-211ENST00000588200 TRHP20396 242 aaPredicted RBP23.55■■□□□ 1.36
PKN1-211ENST00000588200 ERCC6L2Q5T890 1561 aa23.48■■□□□ 1.35
PKN1-211ENST00000588200 IGF1RP08069 1367 aa23.4■■□□□ 1.34
PKN1-211ENST00000588200 JPH4Q96JJ6 628 aa23.39■■□□□ 1.33
PKN1-211ENST00000588200 KIF27Q86VH2 1401 aa23.39■■□□□ 1.33
PKN1-211ENST00000588200 RUSC2Q8N2Y8 1516 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms