RNA–Protein interactions for RNA: ENST00000587604.1

DNMT1-213, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-213ENST00000587604 NISCHQ9Y2I1 1504 aa35.38■■■■□ 3.25
DNMT1-213ENST00000587604 ABCC9O60706 1549 aa31.89■■■□□ 2.7
DNMT1-213ENST00000587604 CCDC180Q9P1Z9 1646 aa31.78■■■□□ 2.68
DNMT1-213ENST00000587604 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.44
DNMT1-213ENST00000587604 NACADO15069 1562 aa30.11■■■□□ 2.41
DNMT1-213ENST00000587604 DNAJC5BQ9UF47 199 aa30.05■■■□□ 2.4
DNMT1-213ENST00000587604 DCAF8L2P0C7V8 631 aa29.94■■■□□ 2.38
DNMT1-213ENST00000587604 PABPN1Q86U42 306 aaKnown RBP eCLIP29.7■■■□□ 2.35
DNMT1-213ENST00000587604 MYO15BQ96JP2 1530 aa29.66■■■□□ 2.34
DNMT1-213ENST00000587604 UNC13AQ9UPW8 1703 aa29.63■■■□□ 2.33
DNMT1-213ENST00000587604 BICRAQ9NZM4 1560 aa29.43■■■□□ 2.3
DNMT1-213ENST00000587604 ZCCHC6Q5VYS8 1495 aaKnown RBP29.28■■■□□ 2.28
DNMT1-213ENST00000587604 DCAF1Q9Y4B6 1507 aa29.23■■■□□ 2.27
DNMT1-213ENST00000587604 SHROOM4Q9ULL8 1493 aa29.04■■■□□ 2.24
DNMT1-213ENST00000587604 SCRIBQ14160 1630 aa28.93■■■□□ 2.22
DNMT1-213ENST00000587604 CC2D2AQ9P2K1 1620 aa28.81■■■□□ 2.2
DNMT1-213ENST00000587604 CECR2Q9BXF3 1484 aa28.75■■■□□ 2.19
DNMT1-213ENST00000587604 EIF4G1Q04637 1599 aaKnown RBP28.72■■■□□ 2.19
DNMT1-213ENST00000587604 NCAPD3P42695 1498 aa27.81■■■□□ 2.04
DNMT1-213ENST00000587604 DNAJC5Q9H3Z4 198 aa27.71■■■□□ 2.03
DNMT1-213ENST00000587604 ATAD2BQ9ULI0 1458 aa27.69■■■□□ 2.02
DNMT1-213ENST00000587604 SMARCA4P51532 1647 aa27.6■■■□□ 2.01
DNMT1-213ENST00000587604 SMARCA2P51531 1590 aa27.6■■■□□ 2.01
DNMT1-213ENST00000587604 CUX2O14529 1486 aa27.55■■■□□ 2
DNMT1-213ENST00000587604 ERCC6Q03468 1493 aa27.55■■■□□ 2
DNMT1-213ENST00000587604 HMGXB3Q12766 1538 aa27.55■■■□□ 2
DNMT1-213ENST00000587604 BAZ1AQ9NRL2 1556 aaPredicted RBP27.47■■□□□ 1.99
DNMT1-213ENST00000587604 BAZ1BQ9UIG0 1483 aaKnown RBP27.39■■□□□ 1.98
DNMT1-213ENST00000587604 PEG3Q9GZU2 1588 aa27.36■■□□□ 1.97
DNMT1-213ENST00000587604 NESP48681 1621 aa27.36■■□□□ 1.97
DNMT1-213ENST00000587604 MROH2BQ7Z745 1585 aa27.25■■□□□ 1.95
DNMT1-213ENST00000587604 LAMC3Q9Y6N6 1575 aa27.17■■□□□ 1.94
DNMT1-213ENST00000587604 THOC2Q8NI27 1593 aaKnown RBP27.09■■□□□ 1.93
DNMT1-213ENST00000587604 PDS5BQ9NTI5 1447 aa27.04■■□□□ 1.92
DNMT1-213ENST00000587604 KIF21AQ7Z4S6 1674 aa27■■□□□ 1.91
DNMT1-213ENST00000587604 CADPSQ9ULU8 1353 aa26.96■■□□□ 1.91
DNMT1-213ENST00000587604 WIZO95785 1651 aa26.92■■□□□ 1.9
DNMT1-213ENST00000587604 MRC2Q9UBG0 1479 aa26.78■■□□□ 1.88
DNMT1-213ENST00000587604 WDR62O43379 1518 aa26.72■■□□□ 1.87
DNMT1-213ENST00000587604 RSF1Q96T23 1441 aaPredicted RBP26.66■■□□□ 1.86
DNMT1-213ENST00000587604 CEP164Q9UPV0 1460 aa26.65■■□□□ 1.86
DNMT1-213ENST00000587604 FANCD2Q9BXW9 1451 aa26.62■■□□□ 1.85
DNMT1-213ENST00000587604 CFTRP13569 1480 aa26.62■■□□□ 1.85
DNMT1-213ENST00000587604 TOP2AP11388 1531 aaKnown RBP26.56■■□□□ 1.84
DNMT1-213ENST00000587604 TRIM41Q8WV44 630 aa26.4■■□□□ 1.82
DNMT1-213ENST00000587604 URB2Q14146 1524 aaKnown RBP26.39■■□□□ 1.82
DNMT1-213ENST00000587604 PRDM2Q13029 1718 aa26.32■■□□□ 1.8
DNMT1-213ENST00000587604 OSCARQ8IYS5 282 aa26.32■■□□□ 1.8
DNMT1-213ENST00000587604 CCDC88BA6NC98 1476 aa26.29■■□□□ 1.8
DNMT1-213ENST00000587604 IFT140Q96RY7 1462 aa26.14■■□□□ 1.78
DNMT1-213ENST00000587604 TOPBP1Q92547 1522 aa26.1■■□□□ 1.77
DNMT1-213ENST00000587604 ZNF608Q9ULD9 1512 aaPredicted RBP26.09■■□□□ 1.77
DNMT1-213ENST00000587604 ABCC8Q09428 1581 aa26.07■■□□□ 1.76
DNMT1-213ENST00000587604 DNMBPQ6XZF7 1577 aa25.99■■□□□ 1.75
DNMT1-213ENST00000587604 RIMBP3CA6NJZ7 1639 aa25.92■■□□□ 1.74
DNMT1-213ENST00000587604 RIMBP3BA6NNM3 1639 aa25.92■■□□□ 1.74
DNMT1-213ENST00000587604 RIMBP3Q9UFD9 1639 aa25.92■■□□□ 1.74
DNMT1-213ENST00000587604 EIF4G3O43432 1585 aaKnown RBP25.92■■□□□ 1.74
DNMT1-213ENST00000587604 TARBP1Q13395 1621 aaKnown RBP25.88■■□□□ 1.73
DNMT1-213ENST00000587604 AQRO60306 1485 aaKnown RBP eCLIP25.85■■□□□ 1.739e-11■■■■■ 29.6
DNMT1-213ENST00000587604 ARHGEF11O15085 1522 aa25.83■■□□□ 1.73
DNMT1-213ENST00000587604 POLA1P09884 1462 aaPredicted RBP25.83■■□□□ 1.73
DNMT1-213ENST00000587604 CHD1O14646 1710 aa25.77■■□□□ 1.72
DNMT1-213ENST00000587604 RAD54L2Q9Y4B4 1467 aa25.73■■□□□ 1.71
DNMT1-213ENST00000587604 SOGA1O94964 1423 aa25.73■■□□□ 1.71
DNMT1-213ENST00000587604 FBLN2P98095 1184 aa25.73■■□□□ 1.71
DNMT1-213ENST00000587604 CYB5RLQ6IPT4 315 aa25.7■■□□□ 1.7
DNMT1-213ENST00000587604 TDRD9Q8NDG6 1382 aaKnown RBP25.69■■□□□ 1.7
DNMT1-213ENST00000587604 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
DNMT1-213ENST00000587604 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
DNMT1-213ENST00000587604 CUX1P39880 1505 aa25.6■■□□□ 1.69
DNMT1-213ENST00000587604 SNAPC4Q5SXM2 1469 aa25.57■■□□□ 1.68
DNMT1-213ENST00000587604 ARAP1Q96P48 1450 aa25.57■■□□□ 1.68
DNMT1-213ENST00000587604 CHMP7Q8WUX9 453 aaPredicted RBP25.53■■□□□ 1.68
DNMT1-213ENST00000587604 MAGI1Q96QZ7 1491 aaPredicted RBP25.52■■□□□ 1.68
DNMT1-213ENST00000587604 GRIN2BQ13224 1484 aa25.51■■□□□ 1.67
DNMT1-213ENST00000587604 CLASP1Q7Z460 1538 aa25.47■■□□□ 1.67
DNMT1-213ENST00000587604 SYNJ1O43426 1573 aa25.45■■□□□ 1.66
DNMT1-213ENST00000587604 SYNJ2O15056 1496 aa25.44■■□□□ 1.66
DNMT1-213ENST00000587604 TRHP20396 242 aaPredicted RBP25.43■■□□□ 1.66
DNMT1-213ENST00000587604 SUPT5HO00267 1087 aaKnown RBP25.41■■□□□ 1.66
DNMT1-213ENST00000587604 GAPVD1Q14C86 1478 aa25.4■■□□□ 1.66
DNMT1-213ENST00000587604 PBRM1Q86U86 1689 aa25.37■■□□□ 1.65
DNMT1-213ENST00000587604 ABCA10Q8WWZ4 1543 aa25.37■■□□□ 1.65
DNMT1-213ENST00000587604 ABCA5Q8WWZ7 1642 aa25.31■■□□□ 1.64
DNMT1-213ENST00000587604 WRNQ14191 1432 aaPredicted RBP eCLIP25.25■■□□□ 1.63
DNMT1-213ENST00000587604 GRIN2AQ12879 1464 aa25.17■■□□□ 1.62
DNMT1-213ENST00000587604 TOP2BQ02880 1626 aa25.17■■□□□ 1.62
DNMT1-213ENST00000587604 BIVM-ERCC5R4GMW8 1640 aa25.16■■□□□ 1.62
DNMT1-213ENST00000587604 ADAMTS12P58397 1594 aa25.12■■□□□ 1.61
DNMT1-213ENST00000587604 NUP160Q12769 1436 aa25.1■■□□□ 1.61
DNMT1-213ENST00000587604 FHAD1B1AJZ9 1412 aa25.09■■□□□ 1.61
DNMT1-213ENST00000587604 CEP170Q5SW79 1584 aa25.07■■□□□ 1.6
DNMT1-213ENST00000587604 ERCC6L2Q5T890 1561 aa25.05■■□□□ 1.6
DNMT1-213ENST00000587604 ERICH3Q5RHP9 1530 aa25.04■■□□□ 1.6
DNMT1-213ENST00000587604 SHROOM2Q13796 1616 aa24.99■■□□□ 1.59
DNMT1-213ENST00000587604 JPH4Q96JJ6 628 aa24.89■■□□□ 1.58
DNMT1-213ENST00000587604 PRG4Q92954 1404 aaPredicted RBP24.86■■□□□ 1.57
DNMT1-213ENST00000587604 AEBP2Q6ZN18 517 aaPredicted RBP24.78■■□□□ 1.56
DNMT1-213ENST00000587604 RUSC2Q8N2Y8 1516 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms