RNA–Protein interactions for RNA: ENST00000587429.1

PKN1-210, Transcript of protein kinase N1, humanhuman

TSL 4

Gene PKN1, Length 562 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKN1-210ENST00000587429 NISCHQ9Y2I1 1504 aa53.47■■■■■ 6.15
PKN1-210ENST00000587429 CCDC180Q9P1Z9 1646 aa47.7■■■■■ 5.23
PKN1-210ENST00000587429 ABCC9O60706 1549 aa47.38■■■■■ 5.18
PKN1-210ENST00000587429 RB1CC1Q8TDY2 1594 aa45.21■■■■■ 4.83
PKN1-210ENST00000587429 DCAF8L2P0C7V8 631 aa45.05■■■■■ 4.8
PKN1-210ENST00000587429 NACADO15069 1562 aa45.01■■■■■ 4.8
PKN1-210ENST00000587429 MYO15BQ96JP2 1530 aa44.5■■■■■ 4.71
PKN1-210ENST00000587429 ZCCHC6Q5VYS8 1495 aaKnown RBP44.39■■■■■ 4.7
PKN1-210ENST00000587429 UNC13AQ9UPW8 1703 aa44.28■■■■■ 4.68
PKN1-210ENST00000587429 PABPN1Q86U42 306 aaKnown RBP eCLIP44.25■■■■■ 4.67
PKN1-210ENST00000587429 DCAF1Q9Y4B6 1507 aa44.13■■■■■ 4.65
PKN1-210ENST00000587429 DNAJC5BQ9UF47 199 aa44.12■■■■■ 4.65
PKN1-210ENST00000587429 BICRAQ9NZM4 1560 aa43.95■■■■■ 4.63
PKN1-210ENST00000587429 SCRIBQ14160 1630 aa43.6■■■■■ 4.57
PKN1-210ENST00000587429 SHROOM4Q9ULL8 1493 aa43.24■■■■■ 4.51
PKN1-210ENST00000587429 EIF4G1Q04637 1599 aaKnown RBP42.79■■■■■ 4.44
PKN1-210ENST00000587429 CC2D2AQ9P2K1 1620 aa42.79■■■■■ 4.44
PKN1-210ENST00000587429 CECR2Q9BXF3 1484 aa42.59■■■■■ 4.41
PKN1-210ENST00000587429 SMARCA4P51532 1647 aa41.61■■■■■ 4.25
PKN1-210ENST00000587429 NCAPD3P42695 1498 aa41.58■■■■■ 4.25
PKN1-210ENST00000587429 ATAD2BQ9ULI0 1458 aa41.54■■■■■ 4.24
PKN1-210ENST00000587429 BAZ1AQ9NRL2 1556 aaPredicted RBP41.43■■■■■ 4.22
PKN1-210ENST00000587429 SMARCA2P51531 1590 aa41.4■■■■■ 4.22
PKN1-210ENST00000587429 HMGXB3Q12766 1538 aa41.27■■■■■ 4.2
PKN1-210ENST00000587429 MROH2BQ7Z745 1585 aa41.25■■■■■ 4.19
PKN1-210ENST00000587429 PEG3Q9GZU2 1588 aa41.16■■■■■ 4.18
PKN1-210ENST00000587429 BAZ1BQ9UIG0 1483 aaKnown RBP41.15■■■■■ 4.18
PKN1-210ENST00000587429 NESP48681 1621 aa40.85■■■■■ 4.13
PKN1-210ENST00000587429 ERCC6Q03468 1493 aa40.82■■■■■ 4.12
PKN1-210ENST00000587429 WIZO95785 1651 aa40.78■■■■■ 4.12
PKN1-210ENST00000587429 RSF1Q96T23 1441 aaPredicted RBP40.56■■■■■ 4.08
PKN1-210ENST00000587429 CUX2O14529 1486 aa40.54■■■■■ 4.08
PKN1-210ENST00000587429 LAMC3Q9Y6N6 1575 aa40.53■■■■■ 4.08
PKN1-210ENST00000587429 CADPSQ9ULU8 1353 aa40.35■■■■■ 4.05
PKN1-210ENST00000587429 KIF21AQ7Z4S6 1674 aa40.31■■■■■ 4.04
PKN1-210ENST00000587429 PDS5BQ9NTI5 1447 aa40.3■■■■■ 4.04
PKN1-210ENST00000587429 THOC2Q8NI27 1593 aaKnown RBP40.27■■■■■ 4.04
PKN1-210ENST00000587429 TOP2AP11388 1531 aaKnown RBP40.23■■■■■ 4.03
PKN1-210ENST00000587429 DNAJC5Q9H3Z4 198 aa40.09■■■■■ 4.01
PKN1-210ENST00000587429 CFTRP13569 1480 aa39.98■■■■□ 3.99
PKN1-210ENST00000587429 MRC2Q9UBG0 1479 aa39.94■■■■□ 3.98
PKN1-210ENST00000587429 FANCD2Q9BXW9 1451 aa39.89■■■■□ 3.98
PKN1-210ENST00000587429 CEP164Q9UPV0 1460 aa39.87■■■■□ 3.97
PKN1-210ENST00000587429 CCDC88BA6NC98 1476 aa39.83■■■■□ 3.97
PKN1-210ENST00000587429 WDR62O43379 1518 aa39.81■■■■□ 3.96
PKN1-210ENST00000587429 PRDM2Q13029 1718 aa39.6■■■■□ 3.93
PKN1-210ENST00000587429 URB2Q14146 1524 aaKnown RBP39.56■■■■□ 3.92
PKN1-210ENST00000587429 SUPT5HO00267 1087 aaKnown RBP39.2■■■■□ 3.87
PKN1-210ENST00000587429 TOPBP1Q92547 1522 aa39.19■■■■□ 3.86
PKN1-210ENST00000587429 ABCC8Q09428 1581 aa39.08■■■■□ 3.85
PKN1-210ENST00000587429 DNMBPQ6XZF7 1577 aa39.07■■■■□ 3.84
PKN1-210ENST00000587429 IFT140Q96RY7 1462 aa39.05■■■■□ 3.84
PKN1-210ENST00000587429 ZNF608Q9ULD9 1512 aaPredicted RBP39.02■■■■□ 3.84
PKN1-210ENST00000587429 OSCARQ8IYS5 282 aa38.85■■■■□ 3.81
PKN1-210ENST00000587429 POLA1P09884 1462 aaPredicted RBP38.83■■■■□ 3.81
PKN1-210ENST00000587429 TARBP1Q13395 1621 aaKnown RBP38.81■■■■□ 3.8
PKN1-210ENST00000587429 EIF4G3O43432 1585 aaKnown RBP38.77■■■■□ 3.8
PKN1-210ENST00000587429 AQRO60306 1485 aaKnown RBP eCLIP38.73■■■■□ 3.791e-6■■■■■ 27.8
PKN1-210ENST00000587429 RAD54L2Q9Y4B4 1467 aa38.73■■■■□ 3.79
PKN1-210ENST00000587429 CUX1P39880 1505 aa38.72■■■■□ 3.79
PKN1-210ENST00000587429 SOGA1O94964 1423 aa38.68■■■■□ 3.78
PKN1-210ENST00000587429 FGD5Q6ZNL6 1462 aa38.66■■■■□ 3.78
PKN1-210ENST00000587429 TDRD9Q8NDG6 1382 aaKnown RBP38.58■■■■□ 3.77
PKN1-210ENST00000587429 TRIM41Q8WV44 630 aa38.57■■■■□ 3.76
PKN1-210ENST00000587429 CHD1O14646 1710 aa38.43■■■■□ 3.74
PKN1-210ENST00000587429 FBLN2P98095 1184 aa38.4■■■■□ 3.74
PKN1-210ENST00000587429 WDR97A6NE52 1622 aa38.34■■■■□ 3.73
PKN1-210ENST00000587429 SNAPC4Q5SXM2 1469 aa38.3■■■■□ 3.72
PKN1-210ENST00000587429 RIMBP3CA6NJZ7 1639 aa38.28■■■■□ 3.72
PKN1-210ENST00000587429 RIMBP3BA6NNM3 1639 aa38.28■■■■□ 3.72
PKN1-210ENST00000587429 RIMBP3Q9UFD9 1639 aa38.28■■■■□ 3.72
PKN1-210ENST00000587429 GRIN2BQ13224 1484 aa38.25■■■■□ 3.71
PKN1-210ENST00000587429 WRNQ14191 1432 aaPredicted RBP eCLIP38.22■■■■□ 3.718e-8■■■■■ 37.6
PKN1-210ENST00000587429 ABCA10Q8WWZ4 1543 aa38.22■■■■□ 3.71
PKN1-210ENST00000587429 GAPVD1Q14C86 1478 aa38.2■■■■□ 3.71
PKN1-210ENST00000587429 SYNJ1O43426 1573 aa38.19■■■■□ 3.7
PKN1-210ENST00000587429 ARHGEF11O15085 1522 aa38.19■■■■□ 3.7
PKN1-210ENST00000587429 MAGI1Q96QZ7 1491 aaPredicted RBP38.18■■■■□ 3.7
PKN1-210ENST00000587429 TOP2BQ02880 1626 aa38.18■■■■□ 3.7
PKN1-210ENST00000587429 BIVM-ERCC5R4GMW8 1640 aa38.18■■■■□ 3.7
PKN1-210ENST00000587429 CHMP7Q8WUX9 453 aaPredicted RBP38.16■■■■□ 3.7
PKN1-210ENST00000587429 PBRM1Q86U86 1689 aa38.15■■■■□ 3.7
PKN1-210ENST00000587429 ABCA5Q8WWZ7 1642 aa38.12■■■■□ 3.69
PKN1-210ENST00000587429 SYNJ2O15056 1496 aa38.06■■■■□ 3.68
PKN1-210ENST00000587429 CYB5RLQ6IPT4 315 aa37.96■■■■□ 3.67
PKN1-210ENST00000587429 CLASP1Q7Z460 1538 aa37.96■■■■□ 3.67
PKN1-210ENST00000587429 ARAP1Q96P48 1450 aa37.87■■■■□ 3.65
PKN1-210ENST00000587429 ADAMTS12P58397 1594 aa37.79■■■■□ 3.64
PKN1-210ENST00000587429 GRIN2AQ12879 1464 aa37.77■■■■□ 3.64
PKN1-210ENST00000587429 ERICH3Q5RHP9 1530 aa37.73■■■■□ 3.63
PKN1-210ENST00000587429 FHAD1B1AJZ9 1412 aa37.72■■■■□ 3.63
PKN1-210ENST00000587429 CEP170Q5SW79 1584 aa37.63■■■■□ 3.61
PKN1-210ENST00000587429 NUP160Q12769 1436 aa37.61■■■■□ 3.61
PKN1-210ENST00000587429 ERCC6L2Q5T890 1561 aa37.49■■■■□ 3.59
PKN1-210ENST00000587429 KIF27Q86VH2 1401 aa37.45■■■■□ 3.59
PKN1-210ENST00000587429 IGF1RP08069 1367 aa37.44■■■■□ 3.58
PKN1-210ENST00000587429 SHROOM2Q13796 1616 aa37.39■■■■□ 3.58
PKN1-210ENST00000587429 TRHP20396 242 aaPredicted RBP37.37■■■■□ 3.57
PKN1-210ENST00000587429 JPH4Q96JJ6 628 aa37.3■■■■□ 3.56
PKN1-210ENST00000587429 CUL7Q14999 1698 aa37.26■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms