RNA–Protein interactions for RNA: ENST00000587376.5

ERCC2-210, Transcript of ERCC excision repair 2, TFIIH core complex helicase subunit, humanhuman

TSL 5

Gene ERCC2, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC2-210ENST00000587376 NISCHQ9Y2I1 1504 aa37.87■■■■□ 3.65
ERCC2-210ENST00000587376 CCDC180Q9P1Z9 1646 aa33.92■■■■□ 3.02
ERCC2-210ENST00000587376 ABCC9O60706 1549 aa33.58■■■□□ 2.97
ERCC2-210ENST00000587376 RB1CC1Q8TDY2 1594 aa32.18■■■□□ 2.74
ERCC2-210ENST00000587376 NACADO15069 1562 aa32■■■□□ 2.71
ERCC2-210ENST00000587376 DCAF8L2P0C7V8 631 aa31.96■■■□□ 2.71
ERCC2-210ENST00000587376 MYO15BQ96JP2 1530 aa31.63■■■□□ 2.65
ERCC2-210ENST00000587376 ZCCHC6Q5VYS8 1495 aaKnown RBP31.44■■■□□ 2.62
ERCC2-210ENST00000587376 UNC13AQ9UPW8 1703 aa31.34■■■□□ 2.61
ERCC2-210ENST00000587376 DCAF1Q9Y4B6 1507 aa31.32■■■□□ 2.6
ERCC2-210ENST00000587376 PABPN1Q86U42 306 aaKnown RBP eCLIP31.3■■■□□ 2.6
ERCC2-210ENST00000587376 DNAJC5BQ9UF47 199 aa31.1■■■□□ 2.57
ERCC2-210ENST00000587376 BICRAQ9NZM4 1560 aa31.07■■■□□ 2.56
ERCC2-210ENST00000587376 SCRIBQ14160 1630 aa30.9■■■□□ 2.54
ERCC2-210ENST00000587376 SHROOM4Q9ULL8 1493 aa30.83■■■□□ 2.53
ERCC2-210ENST00000587376 EIF4G1Q04637 1599 aaKnown RBP30.36■■■□□ 2.45
ERCC2-210ENST00000587376 CC2D2AQ9P2K1 1620 aa30.36■■■□□ 2.45
ERCC2-210ENST00000587376 CECR2Q9BXF3 1484 aa30.25■■■□□ 2.43
ERCC2-210ENST00000587376 SMARCA4P51532 1647 aa29.49■■■□□ 2.31
ERCC2-210ENST00000587376 NCAPD3P42695 1498 aa29.48■■■□□ 2.31
ERCC2-210ENST00000587376 SMARCA2P51531 1590 aa29.45■■■□□ 2.31
ERCC2-210ENST00000587376 BAZ1AQ9NRL2 1556 aaPredicted RBP29.44■■■□□ 2.3
ERCC2-210ENST00000587376 ATAD2BQ9ULI0 1458 aa29.42■■■□□ 2.3
ERCC2-210ENST00000587376 HMGXB3Q12766 1538 aa29.33■■■□□ 2.29
ERCC2-210ENST00000587376 BAZ1BQ9UIG0 1483 aaKnown RBP29.23■■■□□ 2.27
ERCC2-210ENST00000587376 PEG3Q9GZU2 1588 aa29.18■■■□□ 2.26
ERCC2-210ENST00000587376 MROH2BQ7Z745 1585 aa29.14■■■□□ 2.26
ERCC2-210ENST00000587376 ERCC6Q03468 1493 aa29.09■■■□□ 2.25
ERCC2-210ENST00000587376 NESP48681 1621 aa28.88■■■□□ 2.21
ERCC2-210ENST00000587376 CUX2O14529 1486 aa28.88■■■□□ 2.21
ERCC2-210ENST00000587376 WIZO95785 1651 aa28.84■■■□□ 2.21
ERCC2-210ENST00000587376 LAMC3Q9Y6N6 1575 aa28.84■■■□□ 2.21
ERCC2-210ENST00000587376 PDS5BQ9NTI5 1447 aa28.69■■■□□ 2.18
ERCC2-210ENST00000587376 RSF1Q96T23 1441 aaPredicted RBP28.66■■■□□ 2.18
ERCC2-210ENST00000587376 CADPSQ9ULU8 1353 aa28.62■■■□□ 2.17
ERCC2-210ENST00000587376 KIF21AQ7Z4S6 1674 aa28.58■■■□□ 2.16
ERCC2-210ENST00000587376 THOC2Q8NI27 1593 aaKnown RBP28.55■■■□□ 2.16
ERCC2-210ENST00000587376 TOP2AP11388 1531 aaKnown RBP28.53■■■□□ 2.16
ERCC2-210ENST00000587376 DNAJC5Q9H3Z4 198 aa28.46■■■□□ 2.15
ERCC2-210ENST00000587376 MRC2Q9UBG0 1479 aa28.38■■■□□ 2.13
ERCC2-210ENST00000587376 CEP164Q9UPV0 1460 aa28.35■■■□□ 2.13
ERCC2-210ENST00000587376 CFTRP13569 1480 aa28.34■■■□□ 2.13
ERCC2-210ENST00000587376 FANCD2Q9BXW9 1451 aa28.32■■■□□ 2.12
ERCC2-210ENST00000587376 WDR62O43379 1518 aa28.26■■■□□ 2.11
ERCC2-210ENST00000587376 CCDC88BA6NC98 1476 aa28.17■■■□□ 2.1
ERCC2-210ENST00000587376 PRDM2Q13029 1718 aa28.15■■■□□ 2.1
ERCC2-210ENST00000587376 URB2Q14146 1524 aaKnown RBP28■■■□□ 2.07
ERCC2-210ENST00000587376 ABCC8Q09428 1581 aa27.85■■■□□ 2.05
ERCC2-210ENST00000587376 TOPBP1Q92547 1522 aa27.78■■■□□ 2.04
ERCC2-210ENST00000587376 IFT140Q96RY7 1462 aa27.76■■■□□ 2.04
ERCC2-210ENST00000587376 DNMBPQ6XZF7 1577 aa27.74■■■□□ 2.03
ERCC2-210ENST00000587376 SUPT5HO00267 1087 aaKnown RBP27.72■■■□□ 2.03
ERCC2-210ENST00000587376 OSCARQ8IYS5 282 aa27.64■■■□□ 2.02
ERCC2-210ENST00000587376 ZNF608Q9ULD9 1512 aaPredicted RBP27.59■■■□□ 2.01
ERCC2-210ENST00000587376 EIF4G3O43432 1585 aaKnown RBP27.52■■■□□ 2
ERCC2-210ENST00000587376 POLA1P09884 1462 aaPredicted RBP27.51■■■□□ 2
ERCC2-210ENST00000587376 TARBP1Q13395 1621 aaKnown RBP27.49■■□□□ 1.99
ERCC2-210ENST00000587376 SOGA1O94964 1423 aa27.44■■□□□ 1.98
ERCC2-210ENST00000587376 TRIM41Q8WV44 630 aa27.42■■□□□ 1.98
ERCC2-210ENST00000587376 AQRO60306 1485 aaKnown RBP eCLIP27.42■■□□□ 1.982e-7■■■■■ 33.4
ERCC2-210ENST00000587376 FGD5Q6ZNL6 1462 aa27.39■■□□□ 1.98
ERCC2-210ENST00000587376 RAD54L2Q9Y4B4 1467 aa27.38■■□□□ 1.97
ERCC2-210ENST00000587376 CUX1P39880 1505 aa27.38■■□□□ 1.97
ERCC2-210ENST00000587376 WDR97A6NE52 1622 aa27.34■■□□□ 1.97
ERCC2-210ENST00000587376 TDRD9Q8NDG6 1382 aaKnown RBP27.31■■□□□ 1.96
ERCC2-210ENST00000587376 FBLN2P98095 1184 aa27.3■■□□□ 1.96
ERCC2-210ENST00000587376 CHD1O14646 1710 aa27.26■■□□□ 1.95
ERCC2-210ENST00000587376 GRIN2BQ13224 1484 aa27.18■■□□□ 1.94
ERCC2-210ENST00000587376 SNAPC4Q5SXM2 1469 aa27.18■■□□□ 1.94
ERCC2-210ENST00000587376 RIMBP3CA6NJZ7 1639 aa27.17■■□□□ 1.94
ERCC2-210ENST00000587376 RIMBP3BA6NNM3 1639 aa27.17■■□□□ 1.94
ERCC2-210ENST00000587376 RIMBP3Q9UFD9 1639 aa27.17■■□□□ 1.94
ERCC2-210ENST00000587376 MAGI1Q96QZ7 1491 aaPredicted RBP27.16■■□□□ 1.94
ERCC2-210ENST00000587376 CHMP7Q8WUX9 453 aaPredicted RBP27.14■■□□□ 1.94
ERCC2-210ENST00000587376 ARHGEF11O15085 1522 aa27.12■■□□□ 1.93
ERCC2-210ENST00000587376 WRNQ14191 1432 aaPredicted RBP eCLIP27.12■■□□□ 1.93
ERCC2-210ENST00000587376 GAPVD1Q14C86 1478 aa27.11■■□□□ 1.93
ERCC2-210ENST00000587376 ABCA10Q8WWZ4 1543 aa27.11■■□□□ 1.93
ERCC2-210ENST00000587376 PBRM1Q86U86 1689 aa27.08■■□□□ 1.93
ERCC2-210ENST00000587376 TOP2BQ02880 1626 aa27.08■■□□□ 1.93
ERCC2-210ENST00000587376 BIVM-ERCC5R4GMW8 1640 aa27.07■■□□□ 1.92
ERCC2-210ENST00000587376 SYNJ2O15056 1496 aa27.05■■□□□ 1.92
ERCC2-210ENST00000587376 SYNJ1O43426 1573 aa27.04■■□□□ 1.92
ERCC2-210ENST00000587376 ABCA5Q8WWZ7 1642 aa27.02■■□□□ 1.92
ERCC2-210ENST00000587376 CYB5RLQ6IPT4 315 aa26.95■■□□□ 1.9
ERCC2-210ENST00000587376 CLASP1Q7Z460 1538 aa26.91■■□□□ 1.9
ERCC2-210ENST00000587376 ARAP1Q96P48 1450 aa26.83■■□□□ 1.89
ERCC2-210ENST00000587376 ADAMTS12P58397 1594 aa26.81■■□□□ 1.88
ERCC2-210ENST00000587376 GRIN2AQ12879 1464 aa26.81■■□□□ 1.88
ERCC2-210ENST00000587376 ERICH3Q5RHP9 1530 aa26.8■■□□□ 1.88
ERCC2-210ENST00000587376 FHAD1B1AJZ9 1412 aa26.79■■□□□ 1.88
ERCC2-210ENST00000587376 NUP160Q12769 1436 aa26.66■■□□□ 1.86
ERCC2-210ENST00000587376 CEP170Q5SW79 1584 aa26.66■■□□□ 1.86
ERCC2-210ENST00000587376 TRHP20396 242 aaPredicted RBP26.64■■□□□ 1.86
ERCC2-210ENST00000587376 KIF27Q86VH2 1401 aa26.61■■□□□ 1.85
ERCC2-210ENST00000587376 SHROOM2Q13796 1616 aa26.52■■□□□ 1.84
ERCC2-210ENST00000587376 CUL7Q14999 1698 aa26.51■■□□□ 1.83
ERCC2-210ENST00000587376 IGF1RP08069 1367 aa26.46■■□□□ 1.83
ERCC2-210ENST00000587376 ERCC6L2Q5T890 1561 aa26.46■■□□□ 1.83
ERCC2-210ENST00000587376 JPH4Q96JJ6 628 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms