RNA–Protein interactions for RNA: ENST00000586993.5

DDX39A-205, Transcript of DExD-box helicase 39A, humanhuman

TSL 4

Gene DDX39A, Length 585 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-205ENST00000586993 NISCHQ9Y2I1 1504 aa54.6■■■■■ 6.33
DDX39A-205ENST00000586993 CCDC180Q9P1Z9 1646 aa48.61■■■■■ 5.37
DDX39A-205ENST00000586993 ABCC9O60706 1549 aa47.72■■■■■ 5.23
DDX39A-205ENST00000586993 RB1CC1Q8TDY2 1594 aa45.79■■■■■ 4.92
DDX39A-205ENST00000586993 NACADO15069 1562 aa45.7■■■■■ 4.91
DDX39A-205ENST00000586993 DCAF8L2P0C7V8 631 aa45.58■■■■■ 4.89
DDX39A-205ENST00000586993 ZCCHC6Q5VYS8 1495 aaKnown RBP45.47■■■■■ 4.87
DDX39A-205ENST00000586993 MYO15BQ96JP2 1530 aa45.36■■■■■ 4.85
DDX39A-205ENST00000586993 DCAF1Q9Y4B6 1507 aa45.13■■■■■ 4.82
DDX39A-205ENST00000586993 UNC13AQ9UPW8 1703 aa44.88■■■■■ 4.78
DDX39A-205ENST00000586993 DNAJC5BQ9UF47 199 aa44.6■■■■■ 4.73
DDX39A-205ENST00000586993 PABPN1Q86U42 306 aaKnown RBP eCLIP44.55■■■■■ 4.72
DDX39A-205ENST00000586993 BICRAQ9NZM4 1560 aa44.52■■■■■ 4.72
DDX39A-205ENST00000586993 SCRIBQ14160 1630 aa44.39■■■■■ 4.7
DDX39A-205ENST00000586993 SHROOM4Q9ULL8 1493 aa43.89■■■■■ 4.62
DDX39A-205ENST00000586993 EIF4G1Q04637 1599 aaKnown RBP43.29■■■■■ 4.52
DDX39A-205ENST00000586993 CC2D2AQ9P2K1 1620 aa43.17■■■■■ 4.5
DDX39A-205ENST00000586993 CECR2Q9BXF3 1484 aa42.9■■■■■ 4.46
DDX39A-205ENST00000586993 SMARCA4P51532 1647 aa42.42■■■■■ 4.38
DDX39A-205ENST00000586993 BAZ1AQ9NRL2 1556 aaPredicted RBP42.3■■■■■ 4.36
DDX39A-205ENST00000586993 ATAD2BQ9ULI0 1458 aa42.2■■■■■ 4.35
DDX39A-205ENST00000586993 NCAPD3P42695 1498 aa42.17■■■■■ 4.34
DDX39A-205ENST00000586993 MROH2BQ7Z745 1585 aa42.12■■■■■ 4.33
DDX39A-205ENST00000586993 SMARCA2P51531 1590 aa42.11■■■■■ 4.33
DDX39A-205ENST00000586993 PEG3Q9GZU2 1588 aa41.99■■■■■ 4.31
DDX39A-205ENST00000586993 HMGXB3Q12766 1538 aa41.97■■■■■ 4.31
DDX39A-205ENST00000586993 BAZ1BQ9UIG0 1483 aaKnown RBP41.83■■■■■ 4.29
DDX39A-205ENST00000586993 WIZO95785 1651 aa41.66■■■■■ 4.26
DDX39A-205ENST00000586993 RSF1Q96T23 1441 aaPredicted RBP41.54■■■■■ 4.24
DDX39A-205ENST00000586993 NESP48681 1621 aa41.29■■■■■ 4.2
DDX39A-205ENST00000586993 TOP2AP11388 1531 aaKnown RBP41.18■■■■■ 4.18
DDX39A-205ENST00000586993 ERCC6Q03468 1493 aa41.13■■■■■ 4.17
DDX39A-205ENST00000586993 LAMC3Q9Y6N6 1575 aa41.08■■■■■ 4.17
DDX39A-205ENST00000586993 CUX2O14529 1486 aa41.01■■■■■ 4.16
DDX39A-205ENST00000586993 CADPSQ9ULU8 1353 aa40.92■■■■■ 4.14
DDX39A-205ENST00000586993 DNAJC5Q9H3Z4 198 aa40.88■■■■■ 4.13
DDX39A-205ENST00000586993 KIF21AQ7Z4S6 1674 aa40.81■■■■■ 4.12
DDX39A-205ENST00000586993 PDS5BQ9NTI5 1447 aa40.76■■■■■ 4.12
DDX39A-205ENST00000586993 THOC2Q8NI27 1593 aaKnown RBP40.7■■■■■ 4.11
DDX39A-205ENST00000586993 CCDC88BA6NC98 1476 aa40.69■■■■■ 4.1
DDX39A-205ENST00000586993 CFTRP13569 1480 aa40.68■■■■■ 4.1
DDX39A-205ENST00000586993 FANCD2Q9BXW9 1451 aa40.49■■■■■ 4.07
DDX39A-205ENST00000586993 CEP164Q9UPV0 1460 aa40.44■■■■■ 4.06
DDX39A-205ENST00000586993 MRC2Q9UBG0 1479 aa40.42■■■■■ 4.06
DDX39A-205ENST00000586993 PRDM2Q13029 1718 aa40.4■■■■■ 4.06
DDX39A-205ENST00000586993 SUPT5HO00267 1087 aaKnown RBP40.33■■■■■ 4.05
DDX39A-205ENST00000586993 WDR62O43379 1518 aa40.32■■■■■ 4.04
DDX39A-205ENST00000586993 URB2Q14146 1524 aaKnown RBP40.15■■■■■ 4.02
DDX39A-205ENST00000586993 TOPBP1Q92547 1522 aa39.85■■■■□ 3.97
DDX39A-205ENST00000586993 DNMBPQ6XZF7 1577 aa39.77■■■■□ 3.96
DDX39A-205ENST00000586993 ABCC8Q09428 1581 aa39.72■■■■□ 3.95
DDX39A-205ENST00000586993 IFT140Q96RY7 1462 aa39.58■■■■□ 3.93
DDX39A-205ENST00000586993 CUX1P39880 1505 aa39.52■■■■□ 3.92
DDX39A-205ENST00000586993 POLA1P09884 1462 aaPredicted RBP39.5■■■■□ 3.91
DDX39A-205ENST00000586993 ZNF608Q9ULD9 1512 aaPredicted RBP39.5■■■■□ 3.91
DDX39A-205ENST00000586993 TARBP1Q13395 1621 aaKnown RBP39.46■■■■□ 3.91
DDX39A-205ENST00000586993 FGD5Q6ZNL6 1462 aa39.38■■■■□ 3.9
DDX39A-205ENST00000586993 RAD54L2Q9Y4B4 1467 aa39.35■■■■□ 3.89
DDX39A-205ENST00000586993 EIF4G3O43432 1585 aaKnown RBP39.33■■■■□ 3.89
DDX39A-205ENST00000586993 SOGA1O94964 1423 aa39.28■■■■□ 3.88
DDX39A-205ENST00000586993 AQRO60306 1485 aaKnown RBP eCLIP39.22■■■■□ 3.874e-7■■■■■ 56.8
DDX39A-205ENST00000586993 OSCARQ8IYS5 282 aa39.19■■■■□ 3.86
DDX39A-205ENST00000586993 TRIM41Q8WV44 630 aa39.15■■■■□ 3.86
DDX39A-205ENST00000586993 SYNJ1O43426 1573 aa39.14■■■■□ 3.86
DDX39A-205ENST00000586993 WRNQ14191 1432 aaPredicted RBP eCLIP39.14■■■■□ 3.863e-13■■■■■ 62.7
DDX39A-205ENST00000586993 BIVM-ERCC5R4GMW8 1640 aa39.12■■■■□ 3.85
DDX39A-205ENST00000586993 WDR97A6NE52 1622 aa39.11■■■■□ 3.85
DDX39A-205ENST00000586993 TDRD9Q8NDG6 1382 aaKnown RBP39.11■■■■□ 3.85
DDX39A-205ENST00000586993 TOP2BQ02880 1626 aa39.11■■■■□ 3.85
DDX39A-205ENST00000586993 ABCA10Q8WWZ4 1543 aa38.97■■■■□ 3.83
DDX39A-205ENST00000586993 CHD1O14646 1710 aa38.89■■■■□ 3.82
DDX39A-205ENST00000586993 ABCA5Q8WWZ7 1642 aa38.88■■■■□ 3.81
DDX39A-205ENST00000586993 SNAPC4Q5SXM2 1469 aa38.86■■■■□ 3.81
DDX39A-205ENST00000586993 GRIN2BQ13224 1484 aa38.85■■■■□ 3.81
DDX39A-205ENST00000586993 GAPVD1Q14C86 1478 aa38.84■■■■□ 3.81
DDX39A-205ENST00000586993 PBRM1Q86U86 1689 aa38.83■■■■□ 3.81
DDX39A-205ENST00000586993 MAGI1Q96QZ7 1491 aaPredicted RBP38.76■■■■□ 3.8
DDX39A-205ENST00000586993 FBLN2P98095 1184 aa38.7■■■■□ 3.79
DDX39A-205ENST00000586993 RIMBP3CA6NJZ7 1639 aa38.63■■■■□ 3.78
DDX39A-205ENST00000586993 RIMBP3BA6NNM3 1639 aa38.63■■■■□ 3.78
DDX39A-205ENST00000586993 RIMBP3Q9UFD9 1639 aa38.63■■■■□ 3.78
DDX39A-205ENST00000586993 SYNJ2O15056 1496 aa38.62■■■■□ 3.77
DDX39A-205ENST00000586993 CHMP7Q8WUX9 453 aaPredicted RBP38.55■■■■□ 3.76
DDX39A-205ENST00000586993 ARHGEF11O15085 1522 aa38.52■■■■□ 3.76
DDX39A-205ENST00000586993 ADAMTS12P58397 1594 aa38.52■■■■□ 3.76
DDX39A-205ENST00000586993 ERICH3Q5RHP9 1530 aa38.48■■■■□ 3.75
DDX39A-205ENST00000586993 CLASP1Q7Z460 1538 aa38.44■■■■□ 3.74
DDX39A-205ENST00000586993 GRIN2AQ12879 1464 aa38.37■■■■□ 3.73
DDX39A-205ENST00000586993 FHAD1B1AJZ9 1412 aa38.37■■■■□ 3.73
DDX39A-205ENST00000586993 KIF27Q86VH2 1401 aa38.3■■■■□ 3.72
DDX39A-205ENST00000586993 CYB5RLQ6IPT4 315 aa38.27■■■■□ 3.72
DDX39A-205ENST00000586993 CEP170Q5SW79 1584 aa38.24■■■■□ 3.71
DDX39A-205ENST00000586993 NUP160Q12769 1436 aa38.21■■■■□ 3.71
DDX39A-205ENST00000586993 IGF1RP08069 1367 aa38.2■■■■□ 3.71
DDX39A-205ENST00000586993 ARAP1Q96P48 1450 aa38.15■■■■□ 3.7
DDX39A-205ENST00000586993 CUL7Q14999 1698 aa38.11■■■■□ 3.69
DDX39A-205ENST00000586993 RUSC2Q8N2Y8 1516 aa38.03■■■■□ 3.68
DDX39A-205ENST00000586993 SHROOM2Q13796 1616 aa37.98■■■■□ 3.67
DDX39A-205ENST00000586993 ERCC6L2Q5T890 1561 aa37.95■■■■□ 3.67
DDX39A-205ENST00000586993 CARMIL1Q5VZK9 1371 aa37.94■■■■□ 3.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms