RNA–Protein interactions for RNA: ENST00000586499.5

TPM4-204, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-204ENST00000586499 NISCHQ9Y2I1 1504 aa46.76■■■■■ 5.08
TPM4-204ENST00000586499 CCDC180Q9P1Z9 1646 aa41.61■■■■■ 4.25
TPM4-204ENST00000586499 ABCC9O60706 1549 aa41.18■■■■■ 4.18
TPM4-204ENST00000586499 RB1CC1Q8TDY2 1594 aa39.36■■■■□ 3.89
TPM4-204ENST00000586499 DCAF8L2P0C7V8 631 aa39.34■■■■□ 3.89
TPM4-204ENST00000586499 NACADO15069 1562 aa39.22■■■■□ 3.87
TPM4-204ENST00000586499 ZCCHC6Q5VYS8 1495 aaKnown RBP38.86■■■■□ 3.81
TPM4-204ENST00000586499 MYO15BQ96JP2 1530 aa38.84■■■■□ 3.81
TPM4-204ENST00000586499 DCAF1Q9Y4B6 1507 aa38.59■■■■□ 3.77
TPM4-204ENST00000586499 UNC13AQ9UPW8 1703 aa38.51■■■■□ 3.76
TPM4-204ENST00000586499 PABPN1Q86U42 306 aaKnown RBP eCLIP38.49■■■■□ 3.75
TPM4-204ENST00000586499 BICRAQ9NZM4 1560 aa38.24■■■■□ 3.71
TPM4-204ENST00000586499 DNAJC5BQ9UF47 199 aa38.15■■■■□ 3.7
TPM4-204ENST00000586499 SCRIBQ14160 1630 aa38.06■■■■□ 3.68
TPM4-204ENST00000586499 SHROOM4Q9ULL8 1493 aa37.64■■■■□ 3.62
TPM4-204ENST00000586499 EIF4G1Q04637 1599 aaKnown RBP37.24■■■■□ 3.55
TPM4-204ENST00000586499 CC2D2AQ9P2K1 1620 aa37.18■■■■□ 3.54
TPM4-204ENST00000586499 CECR2Q9BXF3 1484 aa36.98■■■■□ 3.51
TPM4-204ENST00000586499 SMARCA4P51532 1647 aa36.34■■■■□ 3.41
TPM4-204ENST00000586499 ATAD2BQ9ULI0 1458 aa36.24■■■■□ 3.39
TPM4-204ENST00000586499 NCAPD3P42695 1498 aa36.24■■■■□ 3.39
TPM4-204ENST00000586499 BAZ1AQ9NRL2 1556 aaPredicted RBP36.22■■■■□ 3.39
TPM4-204ENST00000586499 SMARCA2P51531 1590 aa36.11■■■■□ 3.37
TPM4-204ENST00000586499 MROH2BQ7Z745 1585 aa36.08■■■■□ 3.37
TPM4-204ENST00000586499 HMGXB3Q12766 1538 aa35.98■■■■□ 3.35
TPM4-204ENST00000586499 PEG3Q9GZU2 1588 aa35.93■■■■□ 3.34
TPM4-204ENST00000586499 BAZ1BQ9UIG0 1483 aaKnown RBP35.91■■■■□ 3.34
TPM4-204ENST00000586499 WIZO95785 1651 aa35.67■■■■□ 3.3
TPM4-204ENST00000586499 NESP48681 1621 aa35.55■■■■□ 3.28
TPM4-204ENST00000586499 RSF1Q96T23 1441 aaPredicted RBP35.55■■■■□ 3.28
TPM4-204ENST00000586499 ERCC6Q03468 1493 aa35.45■■■■□ 3.27
TPM4-204ENST00000586499 LAMC3Q9Y6N6 1575 aa35.3■■■■□ 3.24
TPM4-204ENST00000586499 TOP2AP11388 1531 aaKnown RBP35.21■■■■□ 3.23
TPM4-204ENST00000586499 CADPSQ9ULU8 1353 aa35.19■■■■□ 3.22
TPM4-204ENST00000586499 CUX2O14529 1486 aa35.12■■■■□ 3.21
TPM4-204ENST00000586499 PDS5BQ9NTI5 1447 aa35.09■■■■□ 3.21
TPM4-204ENST00000586499 KIF21AQ7Z4S6 1674 aa35.06■■■■□ 3.2
TPM4-204ENST00000586499 THOC2Q8NI27 1593 aaKnown RBP34.99■■■■□ 3.19
TPM4-204ENST00000586499 CFTRP13569 1480 aa34.9■■■■□ 3.18
TPM4-204ENST00000586499 CCDC88BA6NC98 1476 aa34.86■■■■□ 3.17
TPM4-204ENST00000586499 FANCD2Q9BXW9 1451 aa34.79■■■■□ 3.16
TPM4-204ENST00000586499 MRC2Q9UBG0 1479 aa34.76■■■■□ 3.15
TPM4-204ENST00000586499 CEP164Q9UPV0 1460 aa34.75■■■■□ 3.15
TPM4-204ENST00000586499 WDR62O43379 1518 aa34.64■■■■□ 3.14
TPM4-204ENST00000586499 PRDM2Q13029 1718 aa34.54■■■■□ 3.12
TPM4-204ENST00000586499 SUPT5HO00267 1087 aaKnown RBP34.52■■■■□ 3.12
TPM4-204ENST00000586499 DNAJC5Q9H3Z4 198 aa34.51■■■■□ 3.12
TPM4-204ENST00000586499 URB2Q14146 1524 aaKnown RBP34.48■■■■□ 3.11
TPM4-204ENST00000586499 TOPBP1Q92547 1522 aa34.2■■■■□ 3.06
TPM4-204ENST00000586499 ABCC8Q09428 1581 aa34.11■■■■□ 3.05
TPM4-204ENST00000586499 DNMBPQ6XZF7 1577 aa34.1■■■■□ 3.05
TPM4-204ENST00000586499 IFT140Q96RY7 1462 aa34.01■■■■□ 3.04
TPM4-204ENST00000586499 ZNF608Q9ULD9 1512 aaPredicted RBP33.99■■■■□ 3.03
TPM4-204ENST00000586499 POLA1P09884 1462 aaPredicted RBP33.89■■■■□ 3.02
TPM4-204ENST00000586499 CUX1P39880 1505 aa33.85■■■■□ 3.01
TPM4-204ENST00000586499 TARBP1Q13395 1621 aaKnown RBP33.84■■■■□ 3.01
TPM4-204ENST00000586499 RAD54L2Q9Y4B4 1467 aa33.81■■■■□ 3
TPM4-204ENST00000586499 FGD5Q6ZNL6 1462 aa33.77■■■■□ 3
TPM4-204ENST00000586499 SOGA1O94964 1423 aa33.77■■■■□ 3
TPM4-204ENST00000586499 EIF4G3O43432 1585 aaKnown RBP33.77■■■■□ 3
TPM4-204ENST00000586499 AQRO60306 1485 aaKnown RBP eCLIP33.76■■■■□ 37e-7■■■■□ 19.3
TPM4-204ENST00000586499 OSCARQ8IYS5 282 aa33.7■■■□□ 2.99
TPM4-204ENST00000586499 TDRD9Q8NDG6 1382 aaKnown RBP33.66■■■□□ 2.98
TPM4-204ENST00000586499 WRNQ14191 1432 aaPredicted RBP eCLIP33.5■■■□□ 2.95
TPM4-204ENST00000586499 WDR97A6NE52 1622 aa33.46■■■□□ 2.95
TPM4-204ENST00000586499 FBLN2P98095 1184 aa33.45■■■□□ 2.95
TPM4-204ENST00000586499 SYNJ1O43426 1573 aa33.45■■■□□ 2.95
TPM4-204ENST00000586499 TOP2BQ02880 1626 aa33.42■■■□□ 2.94
TPM4-204ENST00000586499 BIVM-ERCC5R4GMW8 1640 aa33.42■■■□□ 2.94
TPM4-204ENST00000586499 CHD1O14646 1710 aa33.41■■■□□ 2.94
TPM4-204ENST00000586499 ABCA10Q8WWZ4 1543 aa33.39■■■□□ 2.94
TPM4-204ENST00000586499 SNAPC4Q5SXM2 1469 aa33.39■■■□□ 2.94
TPM4-204ENST00000586499 GRIN2BQ13224 1484 aa33.37■■■□□ 2.93
TPM4-204ENST00000586499 GAPVD1Q14C86 1478 aa33.35■■■□□ 2.93
TPM4-204ENST00000586499 TRIM41Q8WV44 630 aa33.32■■■□□ 2.92
TPM4-204ENST00000586499 MAGI1Q96QZ7 1491 aaPredicted RBP33.28■■■□□ 2.92
TPM4-204ENST00000586499 ABCA5Q8WWZ7 1642 aa33.28■■■□□ 2.92
TPM4-204ENST00000586499 PBRM1Q86U86 1689 aa33.26■■■□□ 2.92
TPM4-204ENST00000586499 CHMP7Q8WUX9 453 aaPredicted RBP33.25■■■□□ 2.91
TPM4-204ENST00000586499 SYNJ2O15056 1496 aa33.18■■■□□ 2.9
TPM4-204ENST00000586499 RIMBP3CA6NJZ7 1639 aa33.17■■■□□ 2.9
TPM4-204ENST00000586499 RIMBP3BA6NNM3 1639 aa33.17■■■□□ 2.9
TPM4-204ENST00000586499 RIMBP3Q9UFD9 1639 aa33.17■■■□□ 2.9
TPM4-204ENST00000586499 ARHGEF11O15085 1522 aa33.13■■■□□ 2.89
TPM4-204ENST00000586499 CLASP1Q7Z460 1538 aa33.02■■■□□ 2.88
TPM4-204ENST00000586499 ADAMTS12P58397 1594 aa32.98■■■□□ 2.87
TPM4-204ENST00000586499 ERICH3Q5RHP9 1530 aa32.97■■■□□ 2.87
TPM4-204ENST00000586499 GRIN2AQ12879 1464 aa32.94■■■□□ 2.86
TPM4-204ENST00000586499 CYB5RLQ6IPT4 315 aa32.93■■■□□ 2.86
TPM4-204ENST00000586499 FHAD1B1AJZ9 1412 aa32.93■■■□□ 2.86
TPM4-204ENST00000586499 ARAP1Q96P48 1450 aa32.86■■■□□ 2.85
TPM4-204ENST00000586499 CEP170Q5SW79 1584 aa32.81■■■□□ 2.84
TPM4-204ENST00000586499 NUP160Q12769 1436 aa32.8■■■□□ 2.84
TPM4-204ENST00000586499 KIF27Q86VH2 1401 aa32.8■■■□□ 2.84
TPM4-204ENST00000586499 IGF1RP08069 1367 aa32.77■■■□□ 2.84
TPM4-204ENST00000586499 ERCC6L2Q5T890 1561 aa32.63■■■□□ 2.81
TPM4-204ENST00000586499 CUL7Q14999 1698 aa32.59■■■□□ 2.81
TPM4-204ENST00000586499 SHROOM2Q13796 1616 aa32.57■■■□□ 2.8
TPM4-204ENST00000586499 CARMIL1Q5VZK9 1371 aa32.55■■■□□ 2.8
TPM4-204ENST00000586499 RUSC2Q8N2Y8 1516 aa32.53■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms