RNA–Protein interactions for RNA: ENST00000585956.5

PTBP1-208, Transcript of polypyrimidine tract binding protein 1, humanhuman

TSL 3

Gene PTBP1, Length 767 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-208ENST00000585956 NISCHQ9Y2I1 1504 aa49.65■■■■■ 5.54
PTBP1-208ENST00000585956 ABCC9O60706 1549 aa44.83■■■■■ 4.77
PTBP1-208ENST00000585956 CCDC180Q9P1Z9 1646 aa44.53■■■■■ 4.72
PTBP1-208ENST00000585956 RB1CC1Q8TDY2 1594 aa42.45■■■■■ 4.39
PTBP1-208ENST00000585956 DNAJC5BQ9UF47 199 aa42.33■■■■■ 4.37
PTBP1-208ENST00000585956 NACADO15069 1562 aa42.12■■■■■ 4.33
PTBP1-208ENST00000585956 DCAF8L2P0C7V8 631 aa41.91■■■■■ 4.3
PTBP1-208ENST00000585956 PABPN1Q86U42 306 aaKnown RBP eCLIP41.74■■■■■ 4.27
PTBP1-208ENST00000585956 UNC13AQ9UPW8 1703 aa41.7■■■■■ 4.27
PTBP1-208ENST00000585956 MYO15BQ96JP2 1530 aa41.45■■■■■ 4.23
PTBP1-208ENST00000585956 BICRAQ9NZM4 1560 aa41.43■■■■■ 4.22
PTBP1-208ENST00000585956 ZCCHC6Q5VYS8 1495 aaKnown RBP41.13■■■■■ 4.17
PTBP1-208ENST00000585956 DCAF1Q9Y4B6 1507 aa40.9■■■■■ 4.14
PTBP1-208ENST00000585956 SCRIBQ14160 1630 aa40.72■■■■■ 4.11
PTBP1-208ENST00000585956 SHROOM4Q9ULL8 1493 aa40.56■■■■■ 4.08
PTBP1-208ENST00000585956 CC2D2AQ9P2K1 1620 aa40.47■■■■■ 4.07
PTBP1-208ENST00000585956 CECR2Q9BXF3 1484 aa40.33■■■■■ 4.05
PTBP1-208ENST00000585956 EIF4G1Q04637 1599 aaKnown RBP40.33■■■■■ 4.05
PTBP1-208ENST00000585956 NCAPD3P42695 1498 aa38.93■■■■□ 3.82
PTBP1-208ENST00000585956 ATAD2BQ9ULI0 1458 aa38.85■■■■□ 3.81
PTBP1-208ENST00000585956 SMARCA4P51532 1647 aa38.78■■■■□ 3.8
PTBP1-208ENST00000585956 DNAJC5Q9H3Z4 198 aa38.76■■■■□ 3.8
PTBP1-208ENST00000585956 HMGXB3Q12766 1538 aa38.62■■■■□ 3.77
PTBP1-208ENST00000585956 SMARCA2P51531 1590 aa38.61■■■■□ 3.77
PTBP1-208ENST00000585956 ERCC6Q03468 1493 aa38.58■■■■□ 3.77
PTBP1-208ENST00000585956 CUX2O14529 1486 aa38.55■■■■□ 3.76
PTBP1-208ENST00000585956 NESP48681 1621 aa38.54■■■■□ 3.76
PTBP1-208ENST00000585956 BAZ1AQ9NRL2 1556 aaPredicted RBP38.47■■■■□ 3.75
PTBP1-208ENST00000585956 BAZ1BQ9UIG0 1483 aaKnown RBP38.41■■■■□ 3.74
PTBP1-208ENST00000585956 PEG3Q9GZU2 1588 aa38.36■■■■□ 3.73
PTBP1-208ENST00000585956 MROH2BQ7Z745 1585 aa38.35■■■■□ 3.73
PTBP1-208ENST00000585956 THOC2Q8NI27 1593 aaKnown RBP38.13■■■■□ 3.69
PTBP1-208ENST00000585956 LAMC3Q9Y6N6 1575 aa38.04■■■■□ 3.68
PTBP1-208ENST00000585956 KIF21AQ7Z4S6 1674 aa37.99■■■■□ 3.67
PTBP1-208ENST00000585956 WIZO95785 1651 aa37.88■■■■□ 3.65
PTBP1-208ENST00000585956 PDS5BQ9NTI5 1447 aa37.78■■■■□ 3.64
PTBP1-208ENST00000585956 CADPSQ9ULU8 1353 aa37.73■■■■□ 3.63
PTBP1-208ENST00000585956 MRC2Q9UBG0 1479 aa37.56■■■■□ 3.6
PTBP1-208ENST00000585956 WDR62O43379 1518 aa37.5■■■■□ 3.59
PTBP1-208ENST00000585956 RSF1Q96T23 1441 aaPredicted RBP37.44■■■■□ 3.58
PTBP1-208ENST00000585956 CEP164Q9UPV0 1460 aa37.35■■■■□ 3.57
PTBP1-208ENST00000585956 FANCD2Q9BXW9 1451 aa37.34■■■■□ 3.57
PTBP1-208ENST00000585956 CFTRP13569 1480 aa37.3■■■■□ 3.56
PTBP1-208ENST00000585956 TOP2AP11388 1531 aaKnown RBP37.29■■■■□ 3.56
PTBP1-208ENST00000585956 URB2Q14146 1524 aaKnown RBP37.14■■■■□ 3.54
PTBP1-208ENST00000585956 TRIM41Q8WV44 630 aa37.04■■■■□ 3.52
PTBP1-208ENST00000585956 CCDC88BA6NC98 1476 aa36.92■■■■□ 3.5
PTBP1-208ENST00000585956 PRDM2Q13029 1718 aa36.9■■■■□ 3.5
PTBP1-208ENST00000585956 ZNF608Q9ULD9 1512 aaPredicted RBP36.74■■■■□ 3.47
PTBP1-208ENST00000585956 OSCARQ8IYS5 282 aa36.73■■■■□ 3.47
PTBP1-208ENST00000585956 TOPBP1Q92547 1522 aa36.64■■■■□ 3.46
PTBP1-208ENST00000585956 IFT140Q96RY7 1462 aa36.6■■■■□ 3.45
PTBP1-208ENST00000585956 DNMBPQ6XZF7 1577 aa36.46■■■■□ 3.43
PTBP1-208ENST00000585956 EIF4G3O43432 1585 aaKnown RBP36.45■■■■□ 3.43
PTBP1-208ENST00000585956 RIMBP3CA6NJZ7 1639 aa36.45■■■■□ 3.42
PTBP1-208ENST00000585956 RIMBP3BA6NNM3 1639 aa36.45■■■■□ 3.42
PTBP1-208ENST00000585956 RIMBP3Q9UFD9 1639 aa36.45■■■■□ 3.42
PTBP1-208ENST00000585956 TARBP1Q13395 1621 aaKnown RBP36.37■■■■□ 3.41
PTBP1-208ENST00000585956 ABCC8Q09428 1581 aa36.36■■■■□ 3.41
PTBP1-208ENST00000585956 AQRO60306 1485 aaKnown RBP eCLIP36.33■■■■□ 3.412e-18■■■■■ 40.4
PTBP1-208ENST00000585956 ARHGEF11O15085 1522 aa36.28■■■■□ 3.4
PTBP1-208ENST00000585956 POLA1P09884 1462 aaPredicted RBP36.27■■■■□ 3.4
PTBP1-208ENST00000585956 CHD1O14646 1710 aa36.23■■■■□ 3.39
PTBP1-208ENST00000585956 RAD54L2Q9Y4B4 1467 aa36.2■■■■□ 3.39
PTBP1-208ENST00000585956 TDRD9Q8NDG6 1382 aaKnown RBP36.05■■■■□ 3.36
PTBP1-208ENST00000585956 SOGA1O94964 1423 aa36.03■■■■□ 3.36
PTBP1-208ENST00000585956 CUX1P39880 1505 aa36.03■■■■□ 3.36
PTBP1-208ENST00000585956 FGD5Q6ZNL6 1462 aa36.02■■■■□ 3.36
PTBP1-208ENST00000585956 FBLN2P98095 1184 aa36■■■■□ 3.35
PTBP1-208ENST00000585956 CYB5RLQ6IPT4 315 aa35.98■■■■□ 3.35
PTBP1-208ENST00000585956 ARAP1Q96P48 1450 aa35.96■■■■□ 3.35
PTBP1-208ENST00000585956 SNAPC4Q5SXM2 1469 aa35.92■■■■□ 3.34
PTBP1-208ENST00000585956 WDR97A6NE52 1622 aa35.81■■■■□ 3.32
PTBP1-208ENST00000585956 CLASP1Q7Z460 1538 aa35.8■■■■□ 3.32
PTBP1-208ENST00000585956 GRIN2BQ13224 1484 aa35.72■■■■□ 3.31
PTBP1-208ENST00000585956 MAGI1Q96QZ7 1491 aaPredicted RBP35.72■■■■□ 3.31
PTBP1-208ENST00000585956 CHMP7Q8WUX9 453 aaPredicted RBP35.66■■■■□ 3.3
PTBP1-208ENST00000585956 PBRM1Q86U86 1689 aa35.65■■■■□ 3.3
PTBP1-208ENST00000585956 SYNJ1O43426 1573 aa35.64■■■■□ 3.3
PTBP1-208ENST00000585956 SYNJ2O15056 1496 aa35.63■■■■□ 3.29
PTBP1-208ENST00000585956 SUPT5HO00267 1087 aaKnown RBP35.62■■■■□ 3.29
PTBP1-208ENST00000585956 GAPVD1Q14C86 1478 aa35.6■■■■□ 3.29
PTBP1-208ENST00000585956 ABCA5Q8WWZ7 1642 aa35.58■■■■□ 3.29
PTBP1-208ENST00000585956 ABCA10Q8WWZ4 1543 aa35.56■■■■□ 3.28
PTBP1-208ENST00000585956 TRHP20396 242 aaPredicted RBP35.55■■■■□ 3.28
PTBP1-208ENST00000585956 ERCC6L2Q5T890 1561 aa35.36■■■■□ 3.25
PTBP1-208ENST00000585956 BIVM-ERCC5R4GMW8 1640 aa35.34■■■■□ 3.25
PTBP1-208ENST00000585956 ADAMTS12P58397 1594 aa35.32■■■■□ 3.24
PTBP1-208ENST00000585956 TOP2BQ02880 1626 aa35.32■■■■□ 3.24
PTBP1-208ENST00000585956 GRIN2AQ12879 1464 aa35.31■■■■□ 3.24
PTBP1-208ENST00000585956 WRNQ14191 1432 aaPredicted RBP eCLIP35.31■■■■□ 3.244e-6■□□□□ 10.4
PTBP1-208ENST00000585956 CEP170Q5SW79 1584 aa35.28■■■■□ 3.24
PTBP1-208ENST00000585956 NUP160Q12769 1436 aa35.21■■■■□ 3.23
PTBP1-208ENST00000585956 FHAD1B1AJZ9 1412 aa35.11■■■■□ 3.21
PTBP1-208ENST00000585956 SHROOM2Q13796 1616 aa35.09■■■■□ 3.21
PTBP1-208ENST00000585956 ERICH3Q5RHP9 1530 aa35.06■■■■□ 3.2
PTBP1-208ENST00000585956 PRG4Q92954 1404 aaPredicted RBP34.87■■■■□ 3.17
PTBP1-208ENST00000585956 RUSC2Q8N2Y8 1516 aa34.83■■■■□ 3.17
PTBP1-208ENST00000585956 JPH4Q96JJ6 628 aa34.78■■■■□ 3.16
PTBP1-208ENST00000585956 KIF13AQ9H1H9 1805 aa34.74■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 398.7 ms